RH7DG085300

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG085300.1

Sequence Viewer

Length: 1668 bp
ATGCTTACGGAACAGAAACCCTTAATGAGAGCCCTAAGAAGAAGTCACACTTCTTCTACTTCATCTCCGACGTCGTCAAATTCGTCCTCACCGTCATCGTCGTCGTGGATTCATTTGCGATCGGTTTTGTTAGTCGTTGCTTCTTCGTCTTCCTCACCAGTTTCCACTGATCGGGGCAGTCTTAAATCACCCTGGTCGCGAAGGAGAAAAAAACACGCACTTCTACCTAAACAATGGAAAAGTTTCTTTACACCAGAAGGGAAACTTACTGATGGTGGTGTCAAGTTCTTAAAAAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATACGAGCTGAAGTGTGGCCTTTCCTCCTTGGAGTCTATGACGTGAACAGTTCTAAGGAAGAAAGAGAATCTGTAAAAACTCAGAAAAGAAGAGAATATGAGGACTTGCGGAGACAATGCCGGAGACTTTTAACACAAAGCGAAAAGAGCTTTAAGTTAAAAGAAACTTCTGGAAACAGTAGCAATGAGGGCAGTGGGGAGTTTAGTCAAGTTGTAGATTCCACTGGCCCAGGGGATGTTACAAGTTCCAGGGAATCATTTTCAACTGAGGCAGGAAGCAAATTGCCTGAGGATACAAAATACGCTGCCAGCCATCAAGCTGTTCAGATGTCTGAATCATGCGAAGGAGATGGTGAGAAGAGTGGAGTCACCTGTGAAGATGCCTCTGCAGGTGACACAGAATCAACTGATTCTGATTCATCTGAAGATGCTGATATCACTCGACCTTTACTTGCTACTGAAGGAACTGAAGAGAATTGTGTTGATGACAATGCTAAGGAAAACTCCTCTGTCTCCAATACAGAAAACAGGCGCAAATCCTACACAGCAGAAGATTATGCCACATGGCAGAGAATCATCCGCCTTGATGCTGTGCGTGCGAATGATGAATGGATAATATATTCACCCTCTCAGGCTGATGTCTCAGAGATCAAGGCACATCGATTAGCTGAGAATGTCGGGATGAAGGATTATGAACACTTGGAGCCATGCAGGATTTTTCATGCTGCTCGCCTGGTTGCAATCCTGGAAGCCTATGCTCTGTATGATCCTGAAATTGGTTACTGCCAAGGGATGAGTGATCTACTTACTCCTATCATCTCAGTGATGGAAGAGGACGATGAAGCCTTCTGGTGCTTTGTGGGTTTTATGAAAAAGGCTCGGCATAACTTCCGGCTGGATGAGGCTGGGATTCGGAGGCAGCTTAGCATTATTTCGAAGATTATCAAGGGCAAAGATGTTACTCTCTATAGACACCTGGAGAAGCTTCAAGCAGAGGATTGCTTTTTTGTGTATAGAATGGTAGTGGTTCTCTTCAGGAGGGAGTTGAGCTTTGAGCAAACACTTTGCCTCTGGGAGGTAATGTGGGCAGATCAGGCTGCAATCAGGGCGGGAATTGCCAAGTCTGCTTGGGGGAGGATGAGGTTGAGAGCCCCGCCCACTGACGATCTCTTGCTGTATGCAATAGCGGCATGTGTGCTGCAGCGAAGGAAGCTGATAGTAGAGAAGTACAGCAGCATGGAAGAGATCATGAGGGAGTGCAATAGCATGGCTGGCTGTCTGGATGTTTGGAAGCTTTTAGACGATGCTCATGATTTGGTGGTAACCCTTCATGACAAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

62.51

Weight (kDa)

5.9

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 352 - 479 5.4e-30 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 352 - 471 3.5e-15 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
AatII GACGTC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 704
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 199
AciI CCGC 5 cut(s) 433, 904, 1433, 1478, 1511
AclWI GGATC 2 cut(s) 311, 1085
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 5 cut(s) 354, 768, 804, 813, 1342
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 1553
AfiI CCNNNNNNNGG 3 cut(s) 171, 1100, 1399
AgsI TTSAA 2 cut(s) 588, 1313
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
AluBI AGCT 9 cut(s) 332, 474, 644, 992, 1246, 1309, 1374, 1537, 1618
AluI AGCT 9 cut(s) 332, 474, 644, 992, 1246, 1309, 1374, 1537, 1618
Alw26I GTCTC 4 cut(s) 430, 442, 841, 970
AlwI GGATC 2 cut(s) 311, 1085
AoxI GGCC 2 cut(s) 341, 550
ApeKI GCWGC 7 cut(s) 629, 1049, 1243, 1421, 1522, 1525, 1557
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 7 cut(s) 81, 147, 180, 685, 689, 728, 939
AsuII TTCGAA 1 cut(s) 1259
AxyI CCTNAGG 1 cut(s) 612
BanII GRGCYC 2 cut(s) 34, 1477
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 7 cut(s) 616, 1036, 1255, 1408, 1509, 1537, 1569
BccI CCATC 4 cut(s) 266, 645, 668, 1144
BciT130I CCWGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
BciVI GTATCC 1 cut(s) 610
BcoDI GTCTC 4 cut(s) 430, 442, 841, 970
BfmI CTRYAG 3 cut(s) 711, 1291, 1523
BfuAI ACCTGC 1 cut(s) 704
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 8 cut(s) 630, 1050, 1244, 1422, 1512, 1523, 1526, 1558
BlpI GCTNAGC 1 cut(s) 1247
BlsI GCNGC 8 cut(s) 631, 1051, 1245, 1423, 1513, 1524, 1527, 1559
Bme1390I CCNGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 1029
BmrFI CCNGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
BmsI GCATC 4 cut(s) 694, 742, 901, 1618
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 1322
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 1247
Bpu14I TTCGAA 1 cut(s) 1259
Bsa29I ATCGAT 1 cut(s) 985
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 6 cut(s) 191, 352, 553, 554, 573, 1111
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 1391, 1421
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 1100, 1399
Bse1I ACTGG 2 cut(s) 158, 553
Bse21I CCTNAGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
BseCI ATCGAT 1 cut(s) 985
BseDI CCNNGG 6 cut(s) 191, 352, 553, 554, 573, 1111
BseGI GGATG 7 cut(s) 565, 900, 1011, 1122, 1228, 1467, 1612
BseLI CCNNNNNNNGG 3 cut(s) 171, 1100, 1399
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 7 cut(s) 419, 582, 603, 968, 981, 984, 1158
BseNI ACTGG 2 cut(s) 158, 553
BseRI GAGGAG 1 cut(s) 820
BseXI GCAGC 7 cut(s) 616, 1036, 1255, 1408, 1509, 1537, 1569
BseYI CCCAGC 1 cut(s) 1229
Bsh1236I CGCG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 343, 552
BshVI ATCGAT 1 cut(s) 985
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 445, 1216
BslI CCNNNNNNNGG 3 cut(s) 171, 1100, 1399
BsmAI GTCTC 4 cut(s) 430, 442, 841, 970
BsnI GGCC 2 cut(s) 343, 552
Bsp119I TTCGAA 1 cut(s) 1259
Bsp1286I GDGCHC 2 cut(s) 34, 1477
Bsp143I GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
Bsp1720I GCTNAGC 1 cut(s) 1247
Bsp68I TCGCGA 1 cut(s) 199
BspACI CCGC 5 cut(s) 433, 904, 1433, 1478, 1511
BspANI GGCC 2 cut(s) 343, 552
BspCNI CTCAG 7 cut(s) 418, 583, 604, 967, 980, 985, 1157
BspDI ATCGAT 1 cut(s) 985
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 3 cut(s) 1572, 1633, 1654
BspLI GGNNCC 1 cut(s) 1029
BspMAI CTGCAG 2 cut(s) 715, 1527
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 2 cut(s) 311, 1085
BspT104I TTCGAA 1 cut(s) 1259
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 2 cut(s) 158, 553
BssECI CCNNGG 6 cut(s) 191, 352, 553, 554, 573, 1111
BssMI GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
BssNAI GTATAC 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 2 cut(s) 352, 1111
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
Bst4CI ACNGT 3 cut(s) 93, 374, 503
Bst6I CTCTTC 6 cut(s) 409, 677, 789, 1149, 1361, 1560
BstACI GRCGYC 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 1259
BstC8I GCNNGC 4 cut(s) 634, 921, 1054, 1597
BstEII GGTNACC 1 cut(s) 1645
BstENI CCTNNNNNAGG 1 cut(s) 1397
BstF5I GGATG 7 cut(s) 565, 900, 1011, 1122, 1228, 1467, 1612
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 9 cut(s) 122, 172, 319, 975, 1093, 1126, 1417, 1492, 1572
BstMAI GTCTC 4 cut(s) 430, 442, 841, 970
BstMBI GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
BstMCI CGRYCG 1 cut(s) 122
BstNI CCWGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
BstNSI RCATGY 1 cut(s) 1518
BstPI GGTNACC 1 cut(s) 1645
BstSCI CCNGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
BstSFI CTRYAG 3 cut(s) 711, 1291, 1523
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 7 cut(s) 616, 1036, 1255, 1408, 1509, 1537, 1569
BstV2I GAAGAC 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 985
Bsu36I CCTNAGG 1 cut(s) 612
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 2 cut(s) 343, 552
BsuTUI ATCGAT 1 cut(s) 985
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 7 cut(s) 565, 900, 1011, 1122, 1228, 1467, 1612
BtsI GCAGTG 2 cut(s) 310, 523
BtsIMutI CAGTG 6 cut(s) 165, 310, 523, 546, 1152, 1482
BtuMI TCGCGA 1 cut(s) 199
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 4 cut(s) 634, 921, 1054, 1597
CciI TCATGA 3 cut(s) 1572, 1633, 1654
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 1 cut(s) 551
ClaI ATCGAT 1 cut(s) 985
Csp6I GTAC 1 cut(s) 1552
CviQI GTAC 1 cut(s) 1552
DpnI GATC 9 cut(s) 121, 171, 318, 974, 1092, 1125, 1416, 1491, 1571
DpnII GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
Eam1104I CTCTTC 6 cut(s) 409, 677, 789, 1149, 1361, 1560
EarI CTCTTC 6 cut(s) 409, 677, 789, 1149, 1361, 1560
EciI GGCGGA 1 cut(s) 893
Eco130I CCWWGG 2 cut(s) 352, 1111
Eco24I GRGCYC 2 cut(s) 34, 1477
Eco32I GATATC 1 cut(s) 760
Eco57I CTGAAG 5 cut(s) 354, 768, 804, 813, 1342
Eco81I CCTNAGG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 1645
EcoNI CCTNNNNNAGG 1 cut(s) 1397
EcoO65I GGTNACC 1 cut(s) 1645
EcoRII CCWGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 352, 1111
EcoT38I GRGCYC 2 cut(s) 34, 1477
ErhI CCWWGG 2 cut(s) 352, 1111
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 249, 281
FauI CCCGC 2 cut(s) 1426, 1485
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 8 cut(s) 630, 1050, 1244, 1422, 1512, 1523, 1526, 1558
FokI GGATG 7 cut(s) 572, 887, 1018, 1129, 1235, 1474, 1619
FriOI GRGCYC 2 cut(s) 34, 1477
Fsp4HI GCNGC 8 cut(s) 630, 1050, 1244, 1422, 1512, 1523, 1526, 1558
GlaI GCGC 1 cut(s) 857
GluI GCNGC 8 cut(s) 630, 1050, 1244, 1422, 1512, 1523, 1526, 1558
GsaI CCCAGC 1 cut(s) 1233
GsuI CTGGAG 1 cut(s) 1322
HaeIII GGCC 2 cut(s) 343, 552
HapII CCGG 2 cut(s) 445, 1216
HhaI GCGC 1 cut(s) 858
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HindIII AAGCTT 2 cut(s) 1307, 1616
HpaII CCGG 2 cut(s) 445, 1216
HphI GGTGA 7 cut(s) 81, 147, 180, 685, 689, 728, 939
Hpy166II GTNNAC 2 cut(s) 326, 370
Hpy188I TCNGA 8 cut(s) 69, 408, 651, 658, 739, 748, 970, 1239
Hpy188III TCNNGA 9 cut(s) 198, 495, 1003, 1094, 1360, 1573, 1604, 1634, 1655
Hpy8I GTNNAC 2 cut(s) 326, 370
Hpy99I CGWCG 4 cut(s) 73, 76, 103, 106
HpyAV CCTTC 8 cut(s) 195, 251, 662, 779, 1003, 1180, 1524, 1661
HpyCH4III ACNGT 3 cut(s) 93, 374, 503
HpyCH4IV ACGT 2 cut(s) 71, 366
HpyCH4V TGCA 7 cut(s) 713, 1035, 1064, 1424, 1505, 1525, 1584
HpySE526I ACGT 2 cut(s) 71, 366
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 1 cut(s) 856
Kzo9I GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 7 cut(s) 616, 1036, 1255, 1408, 1509, 1537, 1569
LweI GCATC 4 cut(s) 694, 742, 901, 1618
MaeII ACGT 2 cut(s) 71, 366
MaeIII GTNAC 7 cut(s) 44, 562, 691, 716, 1103, 1282, 1645
MalI GATC 9 cut(s) 121, 171, 318, 974, 1092, 1125, 1416, 1491, 1571
MboI GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
MhlI GDGCHC 2 cut(s) 34, 1477
MluCI AATT 5 cut(s) 79, 605, 799, 1098, 1437
MlyI GAGTC 2 cut(s) 366, 699
MmeI TCCRAC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 6 cut(s) 23, 183, 290, 455, 477, 482
MslI CAYNNNNRTG 1 cut(s) 1145
MspI CCGG 2 cut(s) 445, 1216
MspR9I CCNGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
MvaI CCWGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
MvnI CGCG 1 cut(s) 199
NdeII GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
NlaIV GGNNCC 1 cut(s) 1029
NmeAIII GCCGAG 1 cut(s) 1183
NmuCI GTSAC 3 cut(s) 44, 691, 716
NruI TCGCGA 1 cut(s) 199
NspI RCATGY 1 cut(s) 1518
NspV TTCGAA 1 cut(s) 1259
PagI TCATGA 3 cut(s) 1572, 1633, 1654
PaqCI CACCTGC 1 cut(s) 704
PasI CCCWGGG 1 cut(s) 554
PcsI WCGNNNNNNNCGW 2 cut(s) 80, 89
PdmI GAANNNNTTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 1068
PkrI GCNGC 8 cut(s) 631, 1051, 1245, 1423, 1513, 1524, 1527, 1559
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 2 cut(s) 365, 698
PpsI GAGTC 2 cut(s) 365, 698
Psp6I CCWGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
PspEI GGTNACC 1 cut(s) 1645
PspFI CCCAGC 1 cut(s) 1229
PspGI CCWGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
PspN4I GGNNCC 1 cut(s) 1029
PspPI GGNCC 1 cut(s) 551
PstI CTGCAG 2 cut(s) 715, 1527
PsyI GACNNNGTC 1 cut(s) 73
PvuI CGATCG 1 cut(s) 122
RruI TCGCGA 1 cut(s) 199
RsaI GTAC 1 cut(s) 1553
RsaNI GTAC 1 cut(s) 1552
RseI CAYNNNNRTG 1 cut(s) 1145
SaqAI TTAA 6 cut(s) 23, 183, 290, 455, 477, 482
SatI GCNGC 8 cut(s) 630, 1050, 1244, 1422, 1512, 1523, 1526, 1558
Sau3AI GATC 9 cut(s) 119, 169, 316, 972, 1090, 1123, 1414, 1489, 1569
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 2 cut(s) 366, 699
ScrFI CCNGG 6 cut(s) 193, 555, 574, 1058, 1070, 1301
SduI GDGCHC 2 cut(s) 34, 1477
SfaNI GCATC 4 cut(s) 694, 742, 901, 1618
SfcI CTRYAG 3 cut(s) 711, 1291, 1523
SfuI TTCGAA 1 cut(s) 1259
SmiMI CAYNNNNRTG 1 cut(s) 1145
Sse9I AATT 5 cut(s) 79, 605, 799, 1098, 1437
SsiI CCGC 5 cut(s) 433, 904, 1433, 1478, 1511
StyD4I CCNGG 6 cut(s) 191, 553, 572, 1056, 1068, 1299
StyI CCWWGG 2 cut(s) 352, 1111
TaaI ACNGT 3 cut(s) 93, 374, 503
TaiI ACGT 2 cut(s) 74, 369
TaqI TCGA 3 cut(s) 766, 985, 1259
TasI AATT 5 cut(s) 79, 605, 799, 1098, 1437
TatI WGTACW 1 cut(s) 1551
TauI GCSGC 1 cut(s) 1514
Tru1I TTAA 6 cut(s) 23, 183, 290, 455, 477, 482
Tru9I TTAA 6 cut(s) 23, 183, 290, 455, 477, 482
TscAI CASTG 6 cut(s) 172, 310, 523, 553, 1152, 1489
TseFI GTSAC 3 cut(s) 44, 691, 716
TseI GCWGC 7 cut(s) 629, 1049, 1243, 1421, 1522, 1525, 1557
Tsp45I GTSAC 3 cut(s) 44, 691, 716
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 6 cut(s) 172, 310, 523, 553, 1152, 1489
Tth111I GACNNNGTC 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 1397
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 1518
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 242
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.