Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009328

Physical Location & Seq

Genomic Coordinates Forward (+)

60957023 .. 60966701

Gene Structure 9679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGCCCCTCGGCGGTGATGATCGTCGGCAATGGATCGTGTTCGCGGAGGGTAGCAGCACCGGCGGCGGGAGGAGCGCCTCGCTTATCGGCGGCGGCGTTGGTGGCGGAACCGGAACCGGCTTCTGGGCTTGGACTGCTTCCTCCAATGTCGGATTAGCCGTCGCCGTCACGGCCATGGCCGGAATCGCCTTGGCCGCCACTGTCGTCTACTCTAGGGGCAGTCTTAAATCACCCTGGTCGCGAAGGAGAAAAAAACACGCACTTCTACCTAAACAATGGAAAAGTTTCTTTACACCAGAAGGGAAACTCACTGATGGTGGTGTCAAGTTCTTAAAAAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATACGAGCTGAAGTGTGGCCTTTCCTCCTTGGAGTCTATGATGTGAACAGTTCTAAGGAAGAAAGAGAATCTGTAAAAACTCAGAAAAGAAGAGAATATGAGGACTTGCGGAGACAATGCCGGAGACTTTTAACACAAAGCGAAAAGAGCTTTAAATTAAAAGAAACTTCTGGAAACAGTAGCAATGAGGGCAGTGGGGAGTTTAGTCAAGTTGTAGATTCCACTGGCCCAGGGGATGTTACAAGTTCCAGGGGATCATTTTCAACTGAGGCAGGAAGCAAATTGCCCGAGGATACAAAATACGCTGCCAGCCATCAAGCTGTTCAGATGTCTGAATCATGCGAAGGAGATGGTGAGAAGAGTGGAGTCACCTGTGAAGATGCCTCTGCAGGTGACACAGAATCAACTGATTCTGATTCATCTGAAGATGCTGATATCACTCGACCTTTACTTACTACTGAAGGAACTGAAGAGAATTGTGTTGATGACAATGCTAAGGAAAACTCCTCTGTCTCCAATACAGAAAACAGGCGCAAATCCTACACTGCAGAAGATTATGCCACATGGCAGAGAATCATCCGCCTCGATGCTGTGCGTGCAAATGATGAATGGATAACATATTCACCCGCTCAGGCTGATGTCTCAGAGATCAAGGCACATCGATTAGCTGAGAATGTCGGGATGAAGGATTATGAACACTTGGAGCCATGCAGGATTTTTCATGCTGCTCGCCTGGTTGCAATCCTGGAAGCCTATGCTCTGTATGATCCTGAAATTGGTTACTGCCAAGGGATGAGCGATCTACTTACTCCTATCATCTCAGTGATGGAAGAGGACGATGAAGCCTTCTGGTGCTTTGTGGGTTTTATGAAAAAGGCTCGGCATAACTTCCGGCTGGATGAGGCTGGGATTCGGAGGCAGCTTAGCATTATTTCGAAGATTATCAAGGGCAAAGATGTTACTCTCTATAGACACCTGGAGAAGCTTCAAGCAGAGGATTGCTTTTTTGTGTATAGAATGGTAGTGGTTCTCTTCAGGAGGGAGTTGAGCTTTGAGCAAACACTTTGCCTCTGGGAGGTAATGTGGGCAGATCAGGCTGCAATCAGGGCAGGAATTGCCAAGTCTGCTTGGGGGAGGATGAGGCTGAGAGCCCCGCCCACTGACGATCTCTTGCTGTATGCAATAGCGGCATGTGTGCTGCAGCGAAGGAAGCTGATAGTAGAGAAGTACAGCAGCATGGAAGAGATCATGAGGGAGTGCAATAGCATGGCTGGCTGTCTGGATGTTTGGAAGCTTTTAGACGATGCTCATGATTTGGTGGTAACCCTTCATGACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

569

Amino Acids

63.26

Weight (kDa)

5.63

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	366 - 493	5.6e-30	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	366 - 485	3.7e-15	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41940
fragaria_vesca	FvH4_5g10940 FvH4_5g10940 FvH4_5g10940
malus_domestica	MD14G1126300.v1.1
prunus_persica	Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186871
rosa_laevigata	RLG00000004808
rosa_multiflora	Rmu_ssc0000024.1_g000031
rosa_roxburghii	Rroxscaffold_3G00267750
rosa_rugosa	Rorug06G0477600 Rorug06G0477700 Rorug06G0477800
rosa_samantha	Rh7AG083400 Rh7BG079400 Rh7CG084400 Rh7DG085300
rosa_wichuraiana	Rw7G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	995
AccI	GTMKAC	2 cut(s)	207, 367
AccII	CGCG	2 cut(s)	44, 241
AclWI	GGATC	4 cut(s)	41, 353, 628, 1127
AcoI	YGGCCR	3 cut(s)	171, 177, 192
AcuI	CTGAAG	5 cut(s)	396, 810, 846, 855, 1384
AfaI	GTAC	1 cut(s)	1595
AfiI	CCNNNNNNNGG	5 cut(s)	11, 66, 123, 1142, 1441
AgsI	TTSAA	2 cut(s)	630, 1355
AjnI	CCWGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
AluBI	AGCT	9 cut(s)	374, 516, 686, 1034, 1288, 1351, 1416, 1579, 1660
AluI	AGCT	9 cut(s)	374, 516, 686, 1034, 1288, 1351, 1416, 1579, 1660
Alw26I	GTCTC	4 cut(s)	472, 484, 883, 1012
AlwI	GGATC	4 cut(s)	41, 353, 628, 1127
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	5 cut(s)	171, 177, 192, 383, 592
ApeKI	GCWGC	8 cut(s)	54, 671, 1091, 1285, 1463, 1564, 1567, 1599
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	77, 900
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	6 cut(s)	26, 222, 727, 731, 770, 981
AsuII	TTCGAA	1 cut(s)	1301
AvaI	CYCGRG	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	1519
BbvI	GCAGC	8 cut(s)	66, 658, 1078, 1297, 1450, 1551, 1579, 1611
BccI	CCATC	4 cut(s)	308, 687, 710, 1186
BceAI	ACGGC	3 cut(s)	143, 149, 186
BciT130I	CCWGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	4 cut(s)	472, 484, 883, 1012
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	4 cut(s)	753, 912, 1333, 1565
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	1289
Bme1390I	CCNGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	3 cut(s)	109, 115, 1071
BmrFI	CCNGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
BmsI	GCATC	4 cut(s)	736, 784, 943, 1660
BpmI	CTGGAG	1 cut(s)	1364
Bpu10I	CCTNAGC	2 cut(s)	861, 996
Bpu1102I	GCTNAGC	1 cut(s)	1289
Bpu14I	TTCGAA	1 cut(s)	1301
Bsa29I	ATCGAT	1 cut(s)	1027
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	1433, 1463
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 66, 123, 1142, 1441
Bse118I	RCCGGY	2 cut(s)	59, 116
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	2 cut(s)	35, 556
BseBI	CCWGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
BseCI	ATCGAT	1 cut(s)	1027
BseGI	GGATG	7 cut(s)	607, 942, 1053, 1164, 1270, 1509, 1654
BseLI	CCNNNNNNNGG	5 cut(s)	11, 66, 123, 1142, 1441
BseMI	GCAATG	2 cut(s)	35, 556
BseMII	CTCAG	7 cut(s)	461, 624, 1010, 1023, 1026, 1200, 1502
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	85, 862
BseXI	GCAGC	8 cut(s)	66, 658, 1078, 1297, 1450, 1551, 1579, 1611
BseYI	CCCAGC	1 cut(s)	1271
Bsh1236I	CGCG	2 cut(s)	44, 241
BshFI	GGCC	5 cut(s)	173, 179, 194, 385, 594
BshVI	ATCGAT	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	6 cut(s)	60, 111, 117, 180, 487, 1258
BslI	CCNNNNNNNGG	5 cut(s)	11, 66, 123, 1142, 1441
BsmAI	GTCTC	4 cut(s)	472, 484, 883, 1012
BsnI	GGCC	5 cut(s)	173, 179, 194, 385, 594
BsoBI	CYCGRG	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	1301
Bsp1286I	GDGCHC	1 cut(s)	1519
Bsp1720I	GCTNAGC	1 cut(s)	1289
Bsp19I	CCATGG	1 cut(s)	174
Bsp68I	TCGCGA	1 cut(s)	241
BspANI	GGCC	5 cut(s)	173, 179, 194, 385, 594
BspCNI	CTCAG	7 cut(s)	460, 625, 1009, 1022, 1027, 1199, 1503
BspDI	ATCGAT	1 cut(s)	1027
BspFNI	CGCG	2 cut(s)	44, 241
BspHI	TCATGA	3 cut(s)	1614, 1675, 1696
BspLI	GGNNCC	3 cut(s)	109, 115, 1071
BspMAI	CTGCAG	3 cut(s)	757, 916, 1569
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	4 cut(s)	41, 353, 628, 1127
BspT104I	TTCGAA	1 cut(s)	1301
BsrBI	CCGCTC	1 cut(s)	995
BsrDI	GCAATG	2 cut(s)	35, 556
BsrFI	RCCGGY	2 cut(s)	59, 116
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	2 cut(s)	59, 116
BssNAI	GTATAC	1 cut(s)	368
BssT1I	CCWWGG	4 cut(s)	174, 189, 394, 1153
Bst1107I	GTATAC	1 cut(s)	368
Bst2UI	CCWGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
Bst4CI	ACNGT	3 cut(s)	202, 416, 545
Bst6I	CTCTTC	6 cut(s)	451, 719, 831, 1191, 1403, 1602
BstAPI	GCANNNNNTGC	1 cut(s)	1481
BstBI	TTCGAA	1 cut(s)	1301
BstC8I	GCNNGC	4 cut(s)	676, 963, 1096, 1639
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	1687
BstENI	CCTNNNNNAGG	1 cut(s)	1439
BstF5I	GGATG	7 cut(s)	607, 942, 1053, 1164, 1270, 1509, 1654
BstFNI	CGCG	2 cut(s)	44, 241
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 900
BstMAI	GTCTC	4 cut(s)	472, 484, 883, 1012
BstNI	CCWGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
BstNSI	RCATGY	1 cut(s)	1560
BstPI	GGTNACC	1 cut(s)	1687
BstSCI	CCNGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
BstSFI	CTRYAG	4 cut(s)	753, 912, 1333, 1565
BstUI	CGCG	2 cut(s)	44, 241
BstV1I	GCAGC	8 cut(s)	66, 658, 1078, 1297, 1450, 1551, 1579, 1611
BstZ17I	GTATAC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	1027
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	5 cut(s)	173, 179, 194, 385, 594
BsuTUI	ATCGAT	1 cut(s)	1027
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	607, 942, 1053, 1164, 1270, 1509, 1654
BtsI	GCAGTG	3 cut(s)	352, 565, 909
BtsIMutI	CAGTG	8 cut(s)	198, 309, 352, 565, 588, 909, 1194, 1524
BtuMI	TCGCGA	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	4 cut(s)	676, 963, 1096, 1639
CciI	TCATGA	3 cut(s)	1614, 1675, 1696
CfoI	GCGC	2 cut(s)	77, 900
Cfr10I	RCCGGY	2 cut(s)	59, 116
Cfr13I	GGNCC	1 cut(s)	593
ClaI	ATCGAT	1 cut(s)	1027
Csp6I	GTAC	1 cut(s)	1594
CviQI	GTAC	1 cut(s)	1594
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	3 cut(s)	171, 177, 192
Eam1104I	CTCTTC	6 cut(s)	451, 719, 831, 1191, 1403, 1602
EarI	CTCTTC	6 cut(s)	451, 719, 831, 1191, 1403, 1602
EciI	GGCGGA	2 cut(s)	120, 935
Eco130I	CCWWGG	4 cut(s)	174, 189, 394, 1153
Eco24I	GRGCYC	1 cut(s)	1519
Eco32I	GATATC	1 cut(s)	802
Eco57I	CTGAAG	5 cut(s)	396, 810, 846, 855, 1384
Eco88I	CYCGRG	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	1687
EcoNI	CCTNNNNNAGG	1 cut(s)	1439
EcoO65I	GGTNACC	1 cut(s)	1687
EcoRII	CCWGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	4 cut(s)	174, 189, 394, 1153
EcoT38I	GRGCYC	1 cut(s)	1519
ErhI	CCWWGG	4 cut(s)	174, 189, 394, 1153
FauI	CCCGC	3 cut(s)	59, 1000, 1527
FblI	GTMKAC	2 cut(s)	207, 367
FokI	GGATG	7 cut(s)	614, 929, 1060, 1171, 1277, 1516, 1661
FriOI	GRGCYC	1 cut(s)	1519
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	2 cut(s)	76, 899
GsaI	CCCAGC	1 cut(s)	1275
GsuI	CTGGAG	1 cut(s)	1364
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	5 cut(s)	173, 179, 194, 385, 594
HapII	CCGG	6 cut(s)	60, 111, 117, 180, 487, 1258
HhaI	GCGC	2 cut(s)	77, 900
Hin6I	GCGC	2 cut(s)	75, 898
HinP1I	GCGC	2 cut(s)	75, 898
HindIII	AAGCTT	2 cut(s)	1349, 1658
HpaII	CCGG	6 cut(s)	60, 111, 117, 180, 487, 1258
HphI	GGTGA	6 cut(s)	26, 222, 727, 731, 770, 981
Hpy166II	GTNNAC	3 cut(s)	208, 368, 412
Hpy188I	TCNGA	8 cut(s)	152, 450, 693, 700, 781, 790, 1012, 1281
Hpy188III	TCNNGA	9 cut(s)	240, 537, 1045, 1136, 1402, 1615, 1646, 1676, 1697
Hpy8I	GTNNAC	3 cut(s)	208, 368, 412
Hpy99I	CGWCG	2 cut(s)	27, 164
HpyAV	CCTTC	8 cut(s)	237, 293, 704, 821, 1045, 1222, 1566, 1703
HpyCH4III	ACNGT	3 cut(s)	202, 416, 545
HpyCH4V	TGCA	9 cut(s)	755, 914, 965, 1077, 1106, 1466, 1547, 1567, 1626
HspAI	GCGC	2 cut(s)	75, 898
LmnI	GCTCC	2 cut(s)	72, 1069
Lsp1109I	GCAGC	8 cut(s)	66, 658, 1078, 1297, 1450, 1551, 1579, 1611
LweI	GCATC	4 cut(s)	736, 784, 943, 1660
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	7 cut(s)	166, 604, 733, 758, 1145, 1324, 1687
MbiI	CCGCTC	1 cut(s)	995
MhlI	GDGCHC	1 cut(s)	1519
MluCI	AATT	5 cut(s)	521, 647, 841, 1140, 1479
MlyI	GAGTC	2 cut(s)	408, 741
MmeI	TCCRAC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	5 cut(s)	225, 332, 497, 519, 524
MslI	CAYNNNNRTG	2 cut(s)	173, 1187
MspI	CCGG	6 cut(s)	60, 111, 117, 180, 487, 1258
MspR9I	CCNGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
MvaI	CCWGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
MvnI	CGCG	2 cut(s)	44, 241
NcoI	CCATGG	1 cut(s)	174
NlaIV	GGNNCC	3 cut(s)	109, 115, 1071
NmeAIII	GCCGAG	1 cut(s)	1225
NmuCI	GTSAC	3 cut(s)	166, 733, 758
NruI	TCGCGA	1 cut(s)	241
NspI	RCATGY	1 cut(s)	1560
NspV	TTCGAA	1 cut(s)	1301
PagI	TCATGA	3 cut(s)	1614, 1675, 1696
PaqCI	CACCTGC	1 cut(s)	746
PasI	CCCWGGG	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 156
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	9 cut(s)	183, 434, 584, 701, 767, 776, 782, 939, 1276
PfoI	TCCNGGA	1 cut(s)	1110
PleI	GAGTC	2 cut(s)	407, 740
PpsI	GAGTC	2 cut(s)	407, 740
Psp6I	CCWGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
PspEI	GGTNACC	1 cut(s)	1687
PspFI	CCCAGC	1 cut(s)	1271
PspGI	CCWGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
PspN4I	GGNNCC	3 cut(s)	109, 115, 1071
PspPI	GGNCC	1 cut(s)	593
PstI	CTGCAG	3 cut(s)	757, 916, 1569
RruI	TCGCGA	1 cut(s)	241
RsaI	GTAC	1 cut(s)	1595
RsaNI	GTAC	1 cut(s)	1594
RseI	CAYNNNNRTG	2 cut(s)	173, 1187
SaqAI	TTAA	5 cut(s)	225, 332, 497, 519, 524
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	2 cut(s)	408, 741
ScrFI	CCNGG	6 cut(s)	235, 597, 616, 1100, 1112, 1343
SduI	GDGCHC	1 cut(s)	1519
SfaNI	GCATC	4 cut(s)	736, 784, 943, 1660
SfcI	CTRYAG	4 cut(s)	753, 912, 1333, 1565
SfuI	TTCGAA	1 cut(s)	1301
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	173, 1187
Sse9I	AATT	5 cut(s)	521, 647, 841, 1140, 1479
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	6 cut(s)	233, 595, 614, 1098, 1110, 1341
StyI	CCWWGG	4 cut(s)	174, 189, 394, 1153
TaaI	ACNGT	3 cut(s)	202, 416, 545
TaqI	TCGA	4 cut(s)	808, 951, 1027, 1301
TasI	AATT	5 cut(s)	521, 647, 841, 1140, 1479
TatI	WGTACW	1 cut(s)	1593
TauI	GCSGC	5 cut(s)	66, 93, 96, 197, 1556
TfiI	GAWTC	9 cut(s)	183, 434, 584, 701, 767, 776, 782, 939, 1276
Tru1I	TTAA	5 cut(s)	225, 332, 497, 519, 524
Tru9I	TTAA	5 cut(s)	225, 332, 497, 519, 524
TscAI	CASTG	8 cut(s)	205, 316, 352, 565, 595, 916, 1194, 1531
TseFI	GTSAC	3 cut(s)	166, 733, 758
TseI	GCWGC	8 cut(s)	54, 671, 1091, 1285, 1463, 1564, 1567, 1599
Tsp45I	GTSAC	3 cut(s)	166, 733, 758
TspDTI	ATGAA	8 cut(s)	774, 987, 1064, 1074, 1076, 1221, 1250, 1685
TspRI	CASTG	8 cut(s)	205, 316, 352, 565, 595, 916, 1194, 1531
XagI	CCTNNNNNAGG	1 cut(s)	1439
XceI	RCATGY	1 cut(s)	1560
XmiI	GTMKAC	2 cut(s)	207, 367
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.