Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009328

Physical Location & Seq

Genomic Coordinates Forward (+)

5771964 .. 5776572

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCAGGGTGTTGATCCAATTATACGAGCTGAAGTGTGGCCTTTCCTCCTTGGAGTCTATGACGTGAACAGTTCTAAGGAAGAAAGAGAATCTGTAAAAACTCAGAAAAGAAGAGAATATGAGGACTTGCGGAGACAATGCCGGAGACTTTTAACACAAAGCGAAAAGAGCTTTAAGTTAAAAGAAACTTCTGGAAACAGTAGCAATGAGGGCAGTGGGGAGTTTAGTCAAGTTGTAGATTCCACTGGCCCAGGGGATGTTACAAGTTCCAGGGGATCATTTTCAACTGAGGCAGGAAGCAAATTGCCCGAGGATACAAAATACGCTGCCAGCCATCAAGCTGTTCAGATGTCTGAATTATGCGAAGGAGATGGTGAGAAGAGTGGAGTCACCTGTGAAGATGCCTCTGCAGGTGACACAGAATCAACTGATTCTGATTCATCTGAAGATGCTGATATCACTCGACCTTTACTTACTACTGAAGGAACTGAAGAGAATTGTGTTGATGACAATGCTAAGGAAAACTCCTCTGTCTCCAATACAGAAAACAGGCGCAAATCCTACACAGCAGAAGATTATGCCACATGGCAGAGAATCATCCGCCTCGATGCTGTGCGTGCAAATGATGAATGGATAATATATTCACCCTCTCAGGCTGATGTCTCAGAGATCAAGGCACATCGATTAGCTGAGAATGTCGGGATGAAGGATTATGAACACTTGGAGCCATGCAGGATTTTTCATGCTGCTCGCCTGGTTGCAATCCTGGAAGCCTATGCTCTGTATGATCCTGAAATTGGTTACTGCCAAGGGATGAGCGATCTACTTACTCCTATCATCTCAGTGATGGAAGAGGACGATGAAGCCTTCTGGTGCTTTGTGGGTTTTATGAAAAAGGCTCGGCATAACTTCCGGCTGGATGAGGCTGGGATTCGGAGGCAGCTTAGCATTATTTCTAAGATTATCAAGGGCAAAGATGTTACTCTCTATAGACACCTGGAGAAGCTTCAAGCAGAGGATTGCTTTTTTGTGTATAGAATGGTAGTGGTTCTCTTCAGGAGGGAGTTGAGCTTTGAGCAAACACTTTGCCTCTGGGAGGTAATGTGGGCAGATCAGGCTGCAATCAGGGCGGGAATTGCCAAGTCTGCTTGGGGGAGGATGAGGCTGAGAGCCCCGCCCACTGACGATCTCTTGCTGTATGCAATAGCGGCATGTGTGCTGCAGCGAAGGAAGCTGATAGTAGAGAAGTACAGCAGCATGGAAGAGATCATGAGGGAGTGCAATAGCATGGCTGGCTGTCTGGATGTTTGGAAGCTTTTAGACGATGCTCATGATTTGGTGGTAACCCTTAATGACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

454

Amino Acids

51.43

Weight (kDa)

4.91

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	251 - 378	3.7e-30	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	251 - 370	2.5e-15	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41940
fragaria_vesca	FvH4_5g10940 FvH4_5g10940 FvH4_5g10940
malus_domestica	MD14G1126300.v1.1
prunus_persica	Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186871
rosa_laevigata	RLG00000004808
rosa_multiflora	Rmu_ssc0000024.1_g000031
rosa_roxburghii	Rroxscaffold_3G00267750
rosa_rugosa	Rorug06G0477600 Rorug06G0477700 Rorug06G0477800
rosa_samantha	Rh7AG083400 Rh7BG079400 Rh7CG084400 Rh7DG085300
rosa_wichuraiana	Rw7G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AciI	CCGC	5 cut(s)	130, 601, 1130, 1175, 1208
AclWI	GGATC	3 cut(s)	8, 283, 782
AcuI	CTGAAG	5 cut(s)	51, 465, 501, 510, 1039
AfaI	GTAC	1 cut(s)	1250
AfiI	CCNNNNNNNGG	2 cut(s)	797, 1096
AgsI	TTSAA	2 cut(s)	285, 1010
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	5 cut(s)	250, 269, 753, 765, 996
AluBI	AGCT	9 cut(s)	29, 171, 341, 689, 943, 1006, 1071, 1234, 1315
AluI	AGCT	9 cut(s)	29, 171, 341, 689, 943, 1006, 1071, 1234, 1315
Alw26I	GTCTC	4 cut(s)	127, 139, 538, 667
AlwI	GGATC	3 cut(s)	8, 283, 782
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	38, 247
ApeKI	GCWGC	7 cut(s)	326, 746, 940, 1118, 1219, 1222, 1254
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	4 cut(s)	382, 386, 425, 636
AvaI	CYCGRG	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	1174
BbvI	GCAGC	7 cut(s)	313, 733, 952, 1105, 1206, 1234, 1266
BccI	CCATC	3 cut(s)	342, 365, 841
BciT130I	CCWGG	5 cut(s)	252, 271, 755, 767, 998
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	4 cut(s)	127, 139, 538, 667
BfmI	CTRYAG	3 cut(s)	408, 988, 1220
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	8 cut(s)	327, 747, 941, 1119, 1209, 1220, 1223, 1255
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	8 cut(s)	328, 748, 942, 1120, 1210, 1221, 1224, 1256
Bme1390I	CCNGG	5 cut(s)	252, 271, 755, 767, 998
BmeT110I	CYCGRG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	5 cut(s)	252, 271, 755, 767, 998
BmsI	GCATC	4 cut(s)	391, 439, 598, 1315
BpmI	CTGGAG	1 cut(s)	1019
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	944
Bsa29I	ATCGAT	1 cut(s)	682
BsaJI	CCNNGG	6 cut(s)	49, 250, 251, 270, 309, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	1088, 1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	797, 1096
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	5 cut(s)	252, 271, 755, 767, 998
BseCI	ATCGAT	1 cut(s)	682
BseDI	CCNNGG	6 cut(s)	49, 250, 251, 270, 309, 808
BseGI	GGATG	7 cut(s)	262, 597, 708, 819, 925, 1164, 1309
BseLI	CCNNNNNNNGG	2 cut(s)	797, 1096
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	7 cut(s)	116, 279, 665, 678, 681, 855, 1157
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	7 cut(s)	313, 733, 952, 1105, 1206, 1234, 1266
BseYI	CCCAGC	1 cut(s)	926
BshFI	GGCC	2 cut(s)	40, 249
BshVI	ATCGAT	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	142, 913
BslI	CCNNNNNNNGG	2 cut(s)	797, 1096
BsmAI	GTCTC	4 cut(s)	127, 139, 538, 667
BsnI	GGCC	2 cut(s)	40, 249
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp143I	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
Bsp1720I	GCTNAGC	1 cut(s)	944
BspACI	CCGC	5 cut(s)	130, 601, 1130, 1175, 1208
BspANI	GGCC	2 cut(s)	40, 249
BspCNI	CTCAG	7 cut(s)	115, 280, 664, 677, 682, 854, 1158
BspDI	ATCGAT	1 cut(s)	682
BspHI	TCATGA	2 cut(s)	1269, 1330
BspLI	GGNNCC	1 cut(s)	726
BspMAI	CTGCAG	2 cut(s)	412, 1224
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	3 cut(s)	8, 283, 782
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	6 cut(s)	49, 250, 251, 270, 309, 808
BssMI	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
BssT1I	CCWWGG	2 cut(s)	49, 808
Bst2UI	CCWGG	5 cut(s)	252, 271, 755, 767, 998
Bst4CI	ACNGT	2 cut(s)	71, 200
Bst6I	CTCTTC	6 cut(s)	106, 374, 486, 846, 1058, 1257
BstC8I	GCNNGC	4 cut(s)	331, 618, 751, 1294
BstEII	GGTNACC	1 cut(s)	1342
BstENI	CCTNNNNNAGG	1 cut(s)	1094
BstF5I	GGATG	7 cut(s)	262, 597, 708, 819, 925, 1164, 1309
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	8 cut(s)	16, 278, 672, 790, 823, 1114, 1189, 1269
BstMAI	GTCTC	4 cut(s)	127, 139, 538, 667
BstMBI	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
BstNI	CCWGG	5 cut(s)	252, 271, 755, 767, 998
BstNSI	RCATGY	1 cut(s)	1215
BstPI	GGTNACC	1 cut(s)	1342
BstSCI	CCNGG	5 cut(s)	250, 269, 753, 765, 996
BstSFI	CTRYAG	3 cut(s)	408, 988, 1220
BstV1I	GCAGC	7 cut(s)	313, 733, 952, 1105, 1206, 1234, 1266
Bsu15I	ATCGAT	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	40, 249
BsuTUI	ATCGAT	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	7 cut(s)	262, 597, 708, 819, 925, 1164, 1309
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	4 cut(s)	220, 243, 849, 1179
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	4 cut(s)	331, 618, 751, 1294
CciI	TCATGA	2 cut(s)	1269, 1330
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	1249
CviAII	CATG	8 cut(s)	585, 729, 743, 1212, 1258, 1270, 1288, 1331
CviQI	GTAC	1 cut(s)	1249
DpnI	GATC	8 cut(s)	15, 277, 671, 789, 822, 1113, 1188, 1268
DpnII	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
Eam1104I	CTCTTC	6 cut(s)	106, 374, 486, 846, 1058, 1257
EarI	CTCTTC	6 cut(s)	106, 374, 486, 846, 1058, 1257
EciI	GGCGGA	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	49, 808
Eco24I	GRGCYC	1 cut(s)	1174
Eco32I	GATATC	1 cut(s)	457
Eco57I	CTGAAG	5 cut(s)	51, 465, 501, 510, 1039
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	1342
EcoNI	CCTNNNNNAGG	1 cut(s)	1094
EcoO65I	GGTNACC	1 cut(s)	1342
EcoRII	CCWGG	5 cut(s)	250, 269, 753, 765, 996
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	49, 808
EcoT38I	GRGCYC	1 cut(s)	1174
ErhI	CCWWGG	2 cut(s)	49, 808
FaeI	CATG	8 cut(s)	588, 732, 746, 1215, 1261, 1273, 1291, 1334
FatI	CATG	8 cut(s)	584, 728, 742, 1211, 1257, 1269, 1287, 1330
FauI	CCCGC	2 cut(s)	1123, 1182
Fnu4HI	GCNGC	8 cut(s)	327, 747, 941, 1119, 1209, 1220, 1223, 1255
FokI	GGATG	7 cut(s)	269, 584, 715, 826, 932, 1171, 1316
FriOI	GRGCYC	1 cut(s)	1174
Fsp4HI	GCNGC	8 cut(s)	327, 747, 941, 1119, 1209, 1220, 1223, 1255
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	8 cut(s)	327, 747, 941, 1119, 1209, 1220, 1223, 1255
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	40, 249
HapII	CCGG	2 cut(s)	142, 913
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	8 cut(s)	588, 732, 746, 1215, 1261, 1273, 1291, 1334
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	1004, 1313
HinfI	GANTC	9 cut(s)	54, 89, 239, 387, 422, 431, 437, 594, 931
HpaII	CCGG	2 cut(s)	142, 913
HphI	GGTGA	4 cut(s)	382, 386, 425, 636
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	7 cut(s)	105, 348, 355, 436, 445, 667, 936
Hpy188III	TCNNGA	7 cut(s)	192, 700, 791, 1057, 1270, 1301, 1331
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	359, 476, 700, 877, 1221
HpyCH4III	ACNGT	2 cut(s)	71, 200
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	9 cut(s)	4, 410, 620, 732, 761, 1121, 1202, 1222, 1281
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	8 cut(s)	588, 732, 746, 1215, 1261, 1273, 1291, 1334
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	7 cut(s)	313, 733, 952, 1105, 1206, 1234, 1266
LweI	GCATC	4 cut(s)	391, 439, 598, 1315
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	6 cut(s)	259, 388, 413, 800, 979, 1342
MalI	GATC	8 cut(s)	15, 277, 671, 789, 822, 1113, 1188, 1268
MboI	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
MhlI	GDGCHC	1 cut(s)	1174
MluCI	AATT	6 cut(s)	18, 302, 356, 496, 795, 1134
MlyI	GAGTC	2 cut(s)	63, 396
MseI	TTAA	4 cut(s)	152, 174, 179, 1350
MslI	CAYNNNNRTG	1 cut(s)	842
MspI	CCGG	2 cut(s)	142, 913
MspR9I	CCNGG	5 cut(s)	252, 271, 755, 767, 998
MvaI	CCWGG	5 cut(s)	252, 271, 755, 767, 998
NdeII	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
NlaIII	CATG	8 cut(s)	588, 732, 746, 1215, 1261, 1273, 1291, 1334
NlaIV	GGNNCC	1 cut(s)	726
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	2 cut(s)	388, 413
NspI	RCATGY	1 cut(s)	1215
PagI	TCATGA	2 cut(s)	1269, 1330
PaqCI	CACCTGC	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	251
PfeI	GAWTC	7 cut(s)	89, 239, 422, 431, 437, 594, 931
PfoI	TCCNGGA	1 cut(s)	765
PkrI	GCNGC	8 cut(s)	328, 748, 942, 1120, 1210, 1221, 1224, 1256
PleI	GAGTC	2 cut(s)	62, 395
PpsI	GAGTC	2 cut(s)	62, 395
Psp6I	CCWGG	5 cut(s)	250, 269, 753, 765, 996
PspEI	GGTNACC	1 cut(s)	1342
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	5 cut(s)	250, 269, 753, 765, 996
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	412, 1224
RsaI	GTAC	1 cut(s)	1250
RsaNI	GTAC	1 cut(s)	1249
RseI	CAYNNNNRTG	1 cut(s)	842
SaqAI	TTAA	4 cut(s)	152, 174, 179, 1350
SatI	GCNGC	8 cut(s)	327, 747, 941, 1119, 1209, 1220, 1223, 1255
Sau3AI	GATC	8 cut(s)	13, 275, 669, 787, 820, 1111, 1186, 1266
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	63, 396
ScrFI	CCNGG	5 cut(s)	252, 271, 755, 767, 998
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	4 cut(s)	391, 439, 598, 1315
SfcI	CTRYAG	3 cut(s)	408, 988, 1220
SmiMI	CAYNNNNRTG	1 cut(s)	842
Sse9I	AATT	6 cut(s)	18, 302, 356, 496, 795, 1134
SsiI	CCGC	5 cut(s)	130, 601, 1130, 1175, 1208
StyD4I	CCNGG	5 cut(s)	250, 269, 753, 765, 996
StyI	CCWWGG	2 cut(s)	49, 808
TaaI	ACNGT	2 cut(s)	71, 200
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	463, 606, 682
TasI	AATT	6 cut(s)	18, 302, 356, 496, 795, 1134
TatI	WGTACW	1 cut(s)	1248
TauI	GCSGC	1 cut(s)	1211
TfiI	GAWTC	7 cut(s)	89, 239, 422, 431, 437, 594, 931
Tru1I	TTAA	4 cut(s)	152, 174, 179, 1350
Tru9I	TTAA	4 cut(s)	152, 174, 179, 1350
TscAI	CASTG	4 cut(s)	220, 250, 849, 1186
TseFI	GTSAC	2 cut(s)	388, 413
TseI	GCWGC	7 cut(s)	326, 746, 940, 1118, 1219, 1222, 1254
Tsp45I	GTSAC	2 cut(s)	388, 413
TspDTI	ATGAA	7 cut(s)	429, 642, 719, 729, 731, 876, 905
TspRI	CASTG	4 cut(s)	220, 250, 849, 1186
XagI	CCTNNNNNAGG	1 cut(s)	1094
XceI	RCATGY	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.