FvH4_5g11540

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
6545371 .. 6546482
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11540.t1

Sequence Viewer

Length: 246 bp
ATGGTTCCTCAAGTCAAGATATTCATCATCCTGCTTCTCCTTCTCTTTGATATTTCAGTAACATCAGCTGATAATAACTACAAGGAAGGCATGGAACTTATTTACACCAGTGATCATAAGATGATTAAAGGGAGAAAGCTGCTTATGGAACTTGATGCAATGTTGGATTACCAGGAGCCAGGAGCCAATCCTGGGCATGAACCGCATAAAGGAGGAGGTGGTGGCAATAGAAGTGGTAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.9

Weight (kDa)

5.82

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016845)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 192, 209
AjnI CCWGG 3 cut(s) 171, 178, 190
AluBI AGCT 2 cut(s) 68, 139
AluI AGCT 2 cut(s) 68, 139
ApeKI GCWGC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 126
BciT130I CCWGG 3 cut(s) 173, 180, 192
BclI TGATCA 1 cut(s) 112
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 3 cut(s) 173, 180, 192
BmiI GGNNCC 3 cut(s) 6, 177, 184
BmrFI CCNGG 3 cut(s) 173, 180, 192
BmsI GCATC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 209
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 3 cut(s) 173, 180, 192
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 192, 209
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 192, 209
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 6, 177, 184
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 3 cut(s) 173, 180, 192
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 3 cut(s) 173, 180, 192
BstSCI CCNGG 3 cut(s) 171, 178, 190
BstV1I GCAGC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 115
CspCI CAANNNNNGTGG 1 cut(s) 214
CviAII CATG 2 cut(s) 91, 197
CviJI RGCY 4 cut(s) 68, 139, 178, 185
CviKI_1 RGCY 4 cut(s) 68, 139, 178, 185
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 171, 178, 190
FaeI CATG 2 cut(s) 94, 200
FaiI YATR 5 cut(s) 92, 117, 146, 198, 207
FatI CATG 2 cut(s) 90, 196
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 94, 200
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 50, 80
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
Hsp92II CATG 2 cut(s) 94, 200
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 175, 182
LpnPI CCDG 8 cut(s) 44, 121, 158, 165, 177, 185, 192, 204
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 18, 206, 209
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 3 cut(s) 173, 180, 192
MvaI CCWGG 3 cut(s) 173, 180, 192
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 94, 200
NlaIV GGNNCC 3 cut(s) 6, 177, 184
PkrI GCNGC 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 171, 178, 190
PspGI CCWGG 3 cut(s) 171, 178, 190
PspN4I GGNNCC 3 cut(s) 6, 177, 184
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 173, 180, 192
SetI ASST 3 cut(s) 70, 141, 220
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SsiI CCGC 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 171, 178, 190
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 13, 213
TspRI CASTG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.