Rh7CG079500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016845
Physical Location & Seq
Reverse (-)
5754043 .. 5754527
485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG079500.1

Sequence Viewer

Length: 249 bp
ATGGTTCCTCAAGTCAAGATATTCATCATCCTCCTAGTCCTTCTCTTTGATATATCAGTAATTTCAGCTGATAACAACTACAAGGAAGGCATGGAGCTTACTTACACCAGTGGTCATAAGATGATTAAGGGAAGAAAGCTGCTTATGGAACTTGATGCAATGTTGGATTACCAGGACCCAGGAGCCAATCCCGGGCATGAACCACATAAAGGAGGTGGCGGCGGTGGTAATAGAATTGGTAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

6.25

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016845)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11540
malus_domestica MD06G1112200.v1.1 MD14G1133600.v1.1 MD14G1133700.v1.1
prunus_persica Prupe.5G125500_v2.0.a1
pyrus_communis pycom06g10520
rosa_chinensis RchiOBHm_Chr7g0186221
rosa_roxburghii Rroxscaffold_3G00268310
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068600 Rh7BG084300 Rh7CG079500 Rh7DG080000
rosa_wichuraiana Rw7G006650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 219, 222
AfiI CCNNNNNNNGG 2 cut(s) 192, 209
AjnI CCWGG 2 cut(s) 171, 178
AluBI AGCT 3 cut(s) 68, 97, 139
AluI AGCT 3 cut(s) 68, 97, 139
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 192, 193
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 173, 180
BcnI CCSGG 2 cut(s) 192, 193
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 140, 220
BlsI GCNGC 2 cut(s) 141, 221
Bme1390I CCNGG 4 cut(s) 173, 180, 192, 193
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 6, 177, 184
BmrFI CCNGG 4 cut(s) 173, 180, 192, 193
BmsI GCATC 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 192, 193
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 178, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 209
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 2 cut(s) 173, 180
BseDI CCNNGG 2 cut(s) 178, 191
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 192, 209
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 192, 209
BsoBI CYCGRG 1 cut(s) 191
BspACI CCGC 2 cut(s) 219, 222
BspLI GGNNCC 3 cut(s) 6, 177, 184
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 178, 191
Bst2UI CCWGG 2 cut(s) 173, 180
BstF5I GGATG 1 cut(s) 27
BstNI CCWGG 2 cut(s) 173, 180
BstSCI CCNGG 4 cut(s) 171, 178, 190, 191
BstV1I GCAGC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 191
CviAII CATG 2 cut(s) 91, 197
CviJI RGCY 4 cut(s) 68, 97, 139, 185
CviKI_1 RGCY 4 cut(s) 68, 97, 139, 185
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 171, 178
FaeI CATG 2 cut(s) 94, 200
FaiI YATR 6 cut(s) 53, 92, 117, 146, 198, 207
FatI CATG 2 cut(s) 90, 196
Fnu4HI GCNGC 2 cut(s) 140, 220
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 140, 220
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 140, 220
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 94, 200
HpaII CCGG 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 50, 80
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 2 cut(s) 94, 200
LmnI GCTCC 2 cut(s) 94, 182
LpnPI CCDG 6 cut(s) 121, 158, 165, 185, 192, 205
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 144
MluCI AATT 2 cut(s) 60, 234
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 18, 41, 206
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 4 cut(s) 173, 180, 192, 193
MvaI CCWGG 2 cut(s) 173, 180
NciI CCSGG 2 cut(s) 192, 193
NlaIII CATG 2 cut(s) 94, 200
NlaIV GGNNCC 3 cut(s) 6, 177, 184
PkrI GCNGC 2 cut(s) 141, 221
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 171, 178
PspGI CCWGG 2 cut(s) 171, 178
PspN4I GGNNCC 3 cut(s) 6, 177, 184
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 140, 220
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 4 cut(s) 173, 180, 192, 193
SetI ASST 4 cut(s) 70, 99, 141, 217
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 60, 234
SsiI CCGC 2 cut(s) 219, 222
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 4 cut(s) 171, 178, 190, 191
TasI AATT 2 cut(s) 60, 234
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 13, 213
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 175
XmaI CCCGGG 1 cut(s) 191
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.