MD14G1133600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
21193638 .. 21195076
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1133600.v1.1.491

Sequence Viewer

Length: 237 bp
ATGCTTCCTCAAGTCAAGATTTTCATCCTCATCTTGCTCTTTAACTTTTCGGTTTCAGGAAGAGCTGACAGATTCAACTATGAACTAGAGCTCACTTCCTCAAGTGGTCATGAGGTGGGAGAAAACTGCTCATTTCACTTGATGCAATTTTGGATTACCAAGAGCCAGGGCCAAATCCAAGTCACGAACCACATAAAGGAGGGAATGCTGGCGGTAGAGGTGGGAATCCTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

5.49

Isoelectric Point (pI)

16.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016845)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 76, 233
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 65, 91
AluI AGCT 2 cut(s) 65, 91
Alw21I GWGCWC 1 cut(s) 93
AoxI GGCC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 196
BshFI GGCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 93
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 171
BspHI TCATGA 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 1 cut(s) 24
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 210
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 1 cut(s) 110
CviJI RGCY 4 cut(s) 65, 91, 165, 171
CviKI_1 RGCY 4 cut(s) 65, 91, 165, 171
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 1 cut(s) 113
FaiI YATR 3 cut(s) 81, 111, 194
FatI CATG 1 cut(s) 109
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 1 cut(s) 113
HinfI GANTC 2 cut(s) 72, 225
Hpy188III TCNNGA 4 cut(s) 16, 57, 110, 184
HpyCH4V TGCA 1 cut(s) 145
Hsp92II CATG 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 42, 152, 179, 194
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 146
MnlI CCTC 6 cut(s) 18, 38, 106, 109, 193, 211
MseI TTAA 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 1 cut(s) 167
NlaIII CATG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 181
PagI TCATGA 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 72, 225
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 169
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 93
SetI ASST 4 cut(s) 67, 93, 117, 222
SfaNI GCATC 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 9, 100
SmoI CTYRAG 2 cut(s) 9, 100
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 165
TasI AATT 1 cut(s) 146
TfiI GAWTC 2 cut(s) 72, 225
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 13, 96
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.