MD06G1112200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016845
Physical Location & Seq
Reverse (-)
25079522 .. 25080452
931 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1112200.v1.1.491

Sequence Viewer

Length: 267 bp
ATGCTTCCTCAAGTCAAGATTTGCATCATACTCCTCTTGCTCTTCAACTTTTCGGTTTCGGGCACAGCTGACAGCTTCAAGGATGGAATGGAGCTCACTTACTCAAGTGGTCCTGAGCTTGAGGTGGTTAATCCGCAGAAGATAAAAGCTGGGAGAAAGCTGCTCATTTCACTTGATGCAATGTTGGATTACCATGAGCCAGGGCCAAATCCAGGTCACGAACCACATAAAGGAGGGAATGCTGGTGGTAGAGGTGGGAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.39

Weight (kDa)

6.25

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016845)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11540
malus_domestica MD06G1112200.v1.1 MD14G1133600.v1.1 MD14G1133700.v1.1
prunus_persica Prupe.5G125500_v2.0.a1
pyrus_communis pycom06g10520
rosa_chinensis RchiOBHm_Chr7g0186221
rosa_roxburghii Rroxscaffold_3G00268310
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068600 Rh7BG084300 Rh7CG079500 Rh7DG080000
rosa_wichuraiana Rw7G006650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 212, 230
AgsI TTSAA 2 cut(s) 46, 79
AjnI CCWGG 2 cut(s) 199, 211
AluBI AGCT 6 cut(s) 68, 75, 94, 118, 149, 160
AluI AGCT 6 cut(s) 68, 75, 94, 118, 149, 160
Alw21I GWGCWC 1 cut(s) 96
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 110, 203
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 201, 213
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 201, 213
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 203
BmrFI CCNGG 2 cut(s) 201, 213
BmsI GCATC 2 cut(s) 33, 166
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 88, 140
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 230
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 2 cut(s) 201, 213
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 212, 230
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 212, 230
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 65, 96
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 201, 213
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 88
BstNI CCWGG 2 cut(s) 201, 213
BstSCI CCNGG 2 cut(s) 199, 211
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 110, 203
CviAII CATG 1 cut(s) 194
CviJI RGCY 8 cut(s) 68, 75, 94, 118, 149, 160, 199, 205
CviKI_1 RGCY 8 cut(s) 68, 75, 94, 118, 149, 160, 199, 205
DdeI CTNAG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 199, 211
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 29, 195, 228
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 16, 113, 218
HpyCH4V TGCA 2 cut(s) 24, 179
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 197
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 7 cut(s) 126, 135, 186, 198, 213, 225, 228
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 2 cut(s) 33, 166
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 2 cut(s) 34, 151
MhlI GDGCHC 2 cut(s) 65, 96
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 5 cut(s) 18, 44, 115, 227, 245
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 201, 213
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 201, 213
NlaIII CATG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 47
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 199, 211
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 199, 211
PspPI GGNCC 2 cut(s) 110, 203
PvuII CAGCTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 161
Sau96I GGNCC 2 cut(s) 110, 203
ScrFI CCNGG 2 cut(s) 201, 213
SduI GDGCHC 2 cut(s) 65, 96
SetI ASST 9 cut(s) 70, 77, 96, 120, 126, 151, 162, 217, 256
SfaNI GCATC 2 cut(s) 33, 166
SinI GGWCC 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 9, 103, 119
SmoI CTYRAG 3 cut(s) 9, 103, 119
SsiI CCGC 1 cut(s) 134
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 199, 211
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.