MD14G1133700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
21200166 .. 21206111
5946 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1133700.v1.1.491

Sequence Viewer

Length: 213 bp
ATGCTTCCTCAAGTAAAGATTTTCATCTTCCTCCTCTTGCTCTTTAACTTTTCGGTTTCAGGAAGAGCTGACAGCTTCAAGGATGAACTGGAGCTCACTTCTTCAAGTGGTCATGAGATGACAAAAGGTGGGAGAAAACTGCTCATTTCACTTGATGCAATTTCAGATTACAAGGAGCCAGGGCCAAATAAAGGTCACGATCCACATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

6.25

Isoelectric Point (pI)

22.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016845)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 79, 105
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 3 cut(s) 68, 75, 94
AluI AGCT 3 cut(s) 68, 75, 94
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 184
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 88
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 68, 75, 94, 178, 184
CviKI_1 RGCY 5 cut(s) 68, 75, 94, 178, 184
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 207
FatI CATG 1 cut(s) 112
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 60, 113, 197
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 1 cut(s) 199
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 91, 175
LpnPI CCDG 4 cut(s) 45, 74, 165, 192
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 19, 75, 93
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 159, 208
MnlI CCTC 3 cut(s) 18, 41, 44
MseI TTAA 2 cut(s) 45, 211
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 194
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 182
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 45, 211
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 70, 77, 96, 130, 196
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 159, 208
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 178
TasI AATT 2 cut(s) 159, 208
Tru1I TTAA 2 cut(s) 45, 211
Tru9I TTAA 2 cut(s) 45, 211
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 13, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.