Rh7DG080000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
6403540 .. 6404023
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG080000.1

Sequence Viewer

Length: 249 bp
ATGGTTCCTCAAGTCAAGATATTCATCATCCTCCTAGTCCTTCTCTTTGATATATCAGTAATTTCAGCTGATAATAACTACAAGGAAGGCATGGAGCTTACTTACACCAGTGGTCGTAAGATGATTAAGGGAAGAAAGCTGTTTATGGAACTTGATGCAATGTTGGATTACCAGGACCCAGGAGCCAATCCTGGGCATGAACCACATAAAGGAGGCGGCGGCGGTGGTAATAGAATTGGTAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.98

Weight (kDa)

6.71

Isoelectric Point (pI)

25.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016845)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 216, 219, 222
AfiI CCNNNNNNNGG 2 cut(s) 192, 209
AjnI CCWGG 3 cut(s) 171, 178, 190
AluBI AGCT 3 cut(s) 68, 97, 139
AluI AGCT 3 cut(s) 68, 97, 139
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BciT130I CCWGG 3 cut(s) 173, 180, 192
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 217, 220
BlsI GCNGC 2 cut(s) 218, 221
Bme1390I CCNGG 3 cut(s) 173, 180, 192
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 6, 177, 184
BmrFI CCNGG 3 cut(s) 173, 180, 192
BmsI GCATC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 178, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 209
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 3 cut(s) 173, 180, 192
BseDI CCNNGG 2 cut(s) 178, 191
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 192, 209
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 192, 209
BspACI CCGC 3 cut(s) 216, 219, 222
BspLI GGNNCC 3 cut(s) 6, 177, 184
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 178, 191
Bst2UI CCWGG 3 cut(s) 173, 180, 192
BstF5I GGATG 1 cut(s) 27
BstNI CCWGG 3 cut(s) 173, 180, 192
BstSCI CCNGG 3 cut(s) 171, 178, 190
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 175
CviAII CATG 2 cut(s) 91, 197
CviJI RGCY 4 cut(s) 68, 97, 139, 185
CviKI_1 RGCY 4 cut(s) 68, 97, 139, 185
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 171, 178, 190
FaeI CATG 2 cut(s) 94, 200
FaiI YATR 5 cut(s) 53, 92, 146, 198, 207
FatI CATG 2 cut(s) 90, 196
Fnu4HI GCNGC 2 cut(s) 217, 220
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 217, 220
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 217, 220
Hin1II CATG 2 cut(s) 94, 200
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 50, 80
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 2 cut(s) 94, 200
LmnI GCTCC 2 cut(s) 94, 182
LpnPI CCDG 7 cut(s) 121, 158, 165, 177, 185, 192, 204
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 144
MluCI AATT 2 cut(s) 60, 234
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 18, 41, 206
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 3 cut(s) 173, 180, 192
MvaI CCWGG 3 cut(s) 173, 180, 192
NlaIII CATG 2 cut(s) 94, 200
NlaIV GGNNCC 3 cut(s) 6, 177, 184
PkrI GCNGC 2 cut(s) 218, 221
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 171, 178, 190
PspGI CCWGG 3 cut(s) 171, 178, 190
PspN4I GGNNCC 3 cut(s) 6, 177, 184
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 217, 220
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 3 cut(s) 173, 180, 192
SetI ASST 3 cut(s) 70, 99, 141
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 60, 234
SsiI CCGC 3 cut(s) 216, 219, 222
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 171, 178, 190
TasI AATT 2 cut(s) 60, 234
TauI GCSGC 2 cut(s) 219, 222
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 13, 213
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 175
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.