Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009313

Physical Location & Seq

Genomic Coordinates Forward (+)

6920427 .. 6924761

Gene Structure 4335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGAAGAAGCTGTTATTGTTGCCAGTATCTTCATCATAGGACGAGGGAATTCGTACATACAGCTGTGTCACGATTCTTGCTCATTGCGTTGGGTGCTGGTGTTGGTTTGGGAGTAAATATATTGATTTATCCCATCTGGGCTGGTGAGGATCTGCACAACTTGGTGGCAAAAAATTTCATGGGCGTTGCAAAATCTTTGGAAGGTTGCGTCAGTAGTTACCTCAACTGTATTGAGTATGAGAGAATCCCTTCCAAAATTCTTACCTACCAAGCTTCTGATGACCCTCTTTACAGTGGTTACAGATCTGCTGTAGAATCTACAAGCCAAGAGGATACTCTGATGGGATTTGCTATTTGGGAGCCACCACATGGTCGTTACAAGATGCTTAGGTATCCATGGAAGAACTATGTAAAAGTCAGTGGTGCACTAAGGCATTGTGCTTTTACGGTCATGGCATTGCATGGATGTGTACTTTCTGAGATACAGGCTCCAGCTGAGCGAAGACAAGTATTTAGTAGGGAGCTTCAAAGAGTAGGTTATGAAGGTGCTAAAGTGTTACGTGAACTTGGAAACAAGCTGAAAAAAATGGAGAAAATAGGTCCGGTAGATATACTCAATGAAGTGCATGAGGCTGCAGAAGAGTTGCAAAAGAAAATCGACCAGAAATCGTATCTTCTTGTCAATTCAGAAAGCTGGGAGATAGGCAATCGGGCAAAGGAGCTGGGAGAAATTCAAGACCTTCTGGACTTGAATGATGAAGAGAACAAATTCCATGAATACAAATCCCTTAGTGAAGCGGTACTTGATCTCAGATCTTTTCCTGGGTCACAAAGTTGGGATGAACCTGTACCAGCGAAACCTGCCAGCTTGAACACCTCGCCTCATGATAGTAAACCCTCCAACCTGCCAGTATCCTCAGGAAAAATGTTTATGAAACAGATATCGTGGCCTGCAGGGATGACATTTAAGGCTCAAGTAGAGCCACAAGTGGAAGAATCAAATACTTATGAAAATGCTAGTCAATTGTCATTGGCCACGTTCACGTCGCTGCTGATAGAATTTGTTGCAAGGCTTCAAAATCTTGTTGACTCCTTTGAGGAATTGGGTGAGACGGCACTTTTCAAGGAACCTGTCAACTTGCCAGAACCATTAGAGGCACACGGTGGGTTTTGGAGAAGATTGCTCAACTGTCTGAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

402

Amino Acids

45.24

Weight (kDa)

5.84

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	13 - 370	2.4e-115	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18440
fragaria_vesca	FvH4_5g12330 FvH4_5g12330 FvH4_5g12330 FvH4_5g12330 FvH4_5g12330
malus_domestica	MD06G1214800.v1.1 MD14G1225700.v1.1
prunus_persica	Prupe.5G220200_v2.0.a1
pyrus_communis	pycom06g19140 pycom14g18690
rosa_chinensis	RchiOBHm_Chr7g0185231
rosa_laevigata	RLG00000004929
rosa_multiflora	Rmu_sc0000213.1_g000005 Rmu_sc0008496.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269120
rosa_rugosa	Rorug06G0467100
rosa_samantha	Rh7AG075800 Rh7BG071600 Rh7CG072800 Rh7DG072200
rosa_wichuraiana	Rw7G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	871, 915
AccB7I	CCANNNNNTGG	1 cut(s)	371
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	1035
AcsI	RAATTY	6 cut(s)	50, 175, 258, 732, 770, 1061
AdeI	CACNNNGTG	1 cut(s)	1166
AfaI	GTAC	4 cut(s)	57, 474, 804, 852
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	6 cut(s)	530, 737, 754, 874, 1079, 1126
AjiI	CACGTC	1 cut(s)	1047
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	9 cut(s)	12, 65, 275, 497, 526, 580, 696, 724, 870
AluI	AGCT	9 cut(s)	12, 65, 275, 497, 526, 580, 696, 724, 870
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	1106
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	950, 1035
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	635, 1051
ApoI	RAATTY	6 cut(s)	50, 175, 258, 732, 770, 1061
Asp700I	GAANNNNTTC	2 cut(s)	250, 770
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	158, 1121
AvaII	GGWCC	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	919
BaeGI	GKGCMC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	622, 1038
BccI	CCATC	2 cut(s)	143, 337
BceAI	ACGGC	1 cut(s)	1131
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	3 cut(s)	328, 405, 925
BcoDI	GTCTC	1 cut(s)	1106
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	3 cut(s)	312, 636, 954
BfuAI	ACCTGC	2 cut(s)	871, 915
BfuI	GTATCC	3 cut(s)	328, 405, 925
BglII	AGATCT	2 cut(s)	305, 815
BisI	GCNGC	2 cut(s)	636, 1052
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	2 cut(s)	637, 1053
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	1047
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	363, 492, 1131
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	960
BsaAI	YACGTR	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	398, 824
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	25, 911
Bse21I	CCTNAGG	1 cut(s)	919
Bse3DI	GCAATG	2 cut(s)	84, 458
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	398, 824
BseGI	GGATG	3 cut(s)	473, 847, 966
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	2 cut(s)	84, 458
BseMII	CTCAG	4 cut(s)	471, 489, 826, 933
BseNI	ACTGG	2 cut(s)	25, 911
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	622, 1038
BseYI	CCCAGC	2 cut(s)	696, 724
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	952, 1037
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	1106
BsmBI	CGTCTC	1 cut(s)	1106
BsnI	GGCC	2 cut(s)	952, 1037
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	151, 305, 808, 815
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	2 cut(s)	952, 1037
BspCNI	CTCAG	4 cut(s)	472, 490, 825, 932
BspHI	TCATGA	2 cut(s)	886, 1202
BspLI	GGNNCC	3 cut(s)	363, 492, 1131
BspMAI	CTGCAG	2 cut(s)	640, 958
BspMI	ACCTGC	2 cut(s)	871, 915
BspPI	GGATC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	84, 458
BsrI	ACTGG	2 cut(s)	25, 911
BssECI	CCNNGG	2 cut(s)	398, 824
BssMI	GATC	4 cut(s)	151, 305, 808, 815
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	5 cut(s)	230, 296, 451, 1166, 1193
Bst6I	CTCTTC	2 cut(s)	636, 756
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	868, 954
BstDEI	CTNAG	7 cut(s)	389, 431, 480, 498, 791, 812, 919
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	473, 847, 966
BstKTI	GATC	4 cut(s)	154, 308, 811, 818
BstMAI	GTCTC	1 cut(s)	1106
BstMBI	GATC	4 cut(s)	151, 305, 808, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 863
BstNI	CCWGG	1 cut(s)	825
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	3 cut(s)	312, 636, 954
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	622, 1038
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	3 cut(s)	151, 305, 815
BstYI	RGATCY	3 cut(s)	151, 305, 815
Bsu36I	CCTNAGG	1 cut(s)	919
BsuI	GTATCC	3 cut(s)	328, 405, 925
BsuRI	GGCC	2 cut(s)	952, 1037
BtgI	CCRYGG	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	1047
BtsCI	GGATG	3 cut(s)	473, 847, 966
BtsIMutI	CAGTG	2 cut(s)	301, 427
BveI	ACCTGC	2 cut(s)	871, 915
Cac8I	GCNNGC	2 cut(s)	868, 954
CciI	TCATGA	2 cut(s)	886, 1202
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	4 cut(s)	56, 473, 803, 851
CviAII	CATG	9 cut(s)	181, 371, 399, 454, 464, 629, 776, 887, 1203
CviQI	GTAC	4 cut(s)	56, 473, 803, 851
DdeI	CTNAG	7 cut(s)	389, 431, 480, 498, 791, 812, 919
DpnI	GATC	4 cut(s)	153, 307, 810, 817
DpnII	GATC	4 cut(s)	151, 305, 808, 815
DraIII	CACNNNGTG	1 cut(s)	1166
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	2 cut(s)	636, 756
EarI	CTCTTC	2 cut(s)	636, 756
Eco130I	CCWWGG	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	602
Eco81I	CCTNAGG	1 cut(s)	919
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	945
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	1106
FaeI	CATG	9 cut(s)	184, 374, 402, 457, 467, 632, 779, 890, 1206
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FatI	CATG	9 cut(s)	180, 370, 398, 453, 463, 628, 775, 886, 1202
Fnu4HI	GCNGC	2 cut(s)	636, 1052
FokI	GGATG	3 cut(s)	480, 854, 973
Fsp4HI	GCNGC	2 cut(s)	636, 1052
FspBI	CTAG	1 cut(s)	1020
GluI	GCNGC	2 cut(s)	636, 1052
GsaI	CCCAGC	2 cut(s)	700, 728
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	952, 1037
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	9 cut(s)	184, 374, 402, 457, 467, 632, 779, 890, 1206
HincII	GTYRAC	2 cut(s)	1090, 1138
HindII	GTYRAC	2 cut(s)	1090, 1138
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	5 cut(s)	75, 246, 317, 998, 1091
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	158, 1121
Hpy166II	GTNNAC	7 cut(s)	428, 473, 566, 896, 1044, 1090, 1138
Hpy188I	TCNGA	6 cut(s)	280, 342, 481, 691, 815, 1197
Hpy188III	TCNNGA	6 cut(s)	72, 737, 746, 887, 921, 1203
Hpy8I	GTNNAC	7 cut(s)	428, 473, 566, 896, 1044, 1090, 1138
Hpy99I	CGWCG	1 cut(s)	1051
HpyAV	CCTTC	4 cut(s)	197, 261, 539, 752
HpyCH4III	ACNGT	5 cut(s)	230, 296, 451, 1166, 1193
HpyCH4IV	ACGT	3 cut(s)	562, 1040, 1046
HpyCH4V	TGCA	9 cut(s)	157, 191, 428, 463, 628, 638, 649, 956, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 863
HpyF3I	CTNAG	7 cut(s)	389, 431, 480, 498, 791, 812, 919
HpySE526I	ACGT	3 cut(s)	562, 1040, 1046
Hsp92II	CATG	9 cut(s)	184, 374, 402, 457, 467, 632, 779, 890, 1206
Kzo9I	GATC	4 cut(s)	151, 305, 808, 815
LmnI	GCTCC	4 cut(s)	361, 496, 523, 721
Lsp1109I	GCAGC	2 cut(s)	622, 1038
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	3 cut(s)	562, 1040, 1046
MaeIII	GTNAC	6 cut(s)	69, 218, 299, 377, 558, 828
MalI	GATC	4 cut(s)	153, 307, 810, 817
MboI	GATC	4 cut(s)	151, 305, 808, 815
MboII	GAAGA	9 cut(s)	18, 23, 415, 516, 653, 668, 773, 1007, 1191
MfeI	CAATTG	1 cut(s)	1025
MflI	RGATCY	3 cut(s)	151, 305, 815
MhlI	GDGCHC	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	1037
MluCI	AATT	9 cut(s)	50, 175, 258, 685, 732, 770, 1025, 1061, 1103
MluNI	TGGCCA	1 cut(s)	1037
MlyI	GAGTC	1 cut(s)	1085
MmeI	TCCRAC	1 cut(s)	927
Mox20I	TGGCCA	1 cut(s)	1037
MroXI	GAANNNNTTC	2 cut(s)	250, 770
MscI	TGGCCA	1 cut(s)	1037
MseI	TTAA	1 cut(s)	969
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	1037
MspA1I	CMGCKG	2 cut(s)	65, 497
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	825
MunI	CAATTG	1 cut(s)	1025
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	2 cut(s)	95, 863
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	4 cut(s)	151, 305, 808, 815
NlaIII	CATG	9 cut(s)	184, 374, 402, 457, 467, 632, 779, 890, 1206
NlaIV	GGNNCC	3 cut(s)	363, 492, 1131
NmuCI	GTSAC	2 cut(s)	69, 828
PagI	TCATGA	2 cut(s)	886, 1202
PdmI	GAANNNNTTC	2 cut(s)	250, 770
PfeI	GAWTC	4 cut(s)	75, 246, 317, 998
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	637, 1053
PleI	GAGTC	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1085
Ppu21I	YACGTR	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	823
PspFI	CCCAGC	2 cut(s)	696, 724
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	3 cut(s)	363, 492, 1131
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	2 cut(s)	640, 958
PsuI	RGATCY	3 cut(s)	151, 305, 815
PvuII	CAGCTG	2 cut(s)	65, 497
RsaI	GTAC	4 cut(s)	57, 474, 804, 852
RsaNI	GTAC	4 cut(s)	56, 473, 803, 851
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	969
SatI	GCNGC	2 cut(s)	636, 1052
Sau3AI	GATC	4 cut(s)	151, 305, 808, 815
Sau96I	GGNCC	1 cut(s)	602
SbfI	CCTGCAGG	1 cut(s)	958
SchI	GAGTC	1 cut(s)	1085
ScrFI	CCNGG	1 cut(s)	825
SdaI	CCTGCAGG	1 cut(s)	958
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	3 cut(s)	312, 636, 954
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
Sse8387I	CCTGCAGG	1 cut(s)	958
Sse9I	AATT	9 cut(s)	50, 175, 258, 685, 732, 770, 1025, 1061, 1103
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	1 cut(s)	1020
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	5 cut(s)	230, 296, 451, 1166, 1193
TaiI	ACGT	3 cut(s)	565, 1043, 1049
TaqI	TCGA	1 cut(s)	660
TasI	AATT	9 cut(s)	50, 175, 258, 685, 732, 770, 1025, 1061, 1103
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	4 cut(s)	75, 246, 317, 998
Tru1I	TTAA	1 cut(s)	969
Tru9I	TTAA	1 cut(s)	969
TscAI	CASTG	2 cut(s)	301, 427
TseFI	GTSAC	2 cut(s)	69, 828
TseI	GCWGC	2 cut(s)	635, 1051
Tsp45I	GTSAC	2 cut(s)	69, 828
TspDTI	ATGAA	9 cut(s)	23, 169, 558, 636, 774, 792, 858, 950, 1026
TspRI	CASTG	2 cut(s)	301, 427
Van91I	CCANNNNNTGG	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	6 cut(s)	50, 175, 258, 732, 770, 1061
XmnI	GAANNNNTTC	2 cut(s)	250, 770
XspI	CTAG	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.