Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009313

Physical Location & Seq

Genomic Coordinates Reverse (-)

4874463 .. 4878891

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCAGAGTTATCGGGGTTAGCTGGAGAGTGGGAAGAAGCTGTTATTGTCGCCAGTATCTTTATCATAGGATTTATTGCAACATATGCAAAACTATACCCGACGATGAAGCCTTATGAGTACGGATTTCGGGTGTTCTTGTTGACGTATTGTTTCATCATGGTATCTGGGTATAGGACGAGGGAATTTGTCCATACGGCTGTGTCACGATTCTTGCTCATTGCATTGGGTGCTGGTGTTGGTTTGGGAGTAAATATATTGATATATCCCATCTGGGCTGGTGAGGATCTACACAACTTGGTGGCAAAAAATTTCATGGGCGTTGCAAAATCTTTGGAAGGTTGCGTCAGTAGTTACCTCAACTGTATTGAATATGAGAGGATCCCTTCCAAAATTCTTACCTACCAAGCTTCTGATGACCCACTTTACAGTGGATACAGATCTGCTGTAGAATCTACAAGCCAAGAGGATGCTCTGATGGGATTTGCTATCTGGGAGCCACCTCATGGTCGTTACAAGATGCTTAGATATCCATGGAAGAACTATGTAAAAGTCAGTGGTGCACTAAGGCATTGTGCTTTTACGGTCATGGCATTGCATGGATGTGTACTTTCTGAGATACAGGCTCCGGCTGAGCGAAGACAAGTATTTAGTAGGGAGCTTCAAAGAGTAGGTTACGAAGGTGCTAAAGTGTTACGTGAACTTGGAAACAAACTGAAAAAGATGGAGAAAATAGGTCCAATAGATATACTCAATGAAGTGCATGAGGCTGCAGAAGAGTTGCAAAAGAAAATTGACCAGAAATCATATCTTCTTGTCAATTCAGAAAGCTGGGAGATAGGCAATCGGCCAAAGGAGCTGGCAGAAATTCAAGACCTCCTGGACTTGGATGATGAGGAGAATAAATTCCATGAATACAAATCCCTTAGTGAAGCGGTACTGGATCTCAGATCTTTTCCTGGGTCACAAAGTTGGGATGATCCTGTACCAGCGAAATCTGCCAGCTTGAACACCTCTCCTCCTGATAGCAACCCCTCCAACCTGCCAGTACCCTCAGGAAGTATGTTCATGAAACAGATCTCGTGGCCTGCAGGAATGACATTTAAGGCTCATGCAGAGCCACAAGTGGAAGAATCAAATACCTATCAAAATGCTAGTCAATTGTCATTGGCCACGTTCACATCCCTGCTGATAGAATTTGTTGCAAGGCTTCAAAATCTTGTCGACTCGTTTGAGGAATTGGGTGAGACAGCACTTTTCAAGGAACCTGTTGACTTGCCAGAACCATTAGAGTCACGCGGCGGGTTTTGGACCAGATTGCTCGACTGTCTGAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

446

Amino Acids

50.1

Weight (kDa)

5.15

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	2 - 415	5.6e-144	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18440
fragaria_vesca	FvH4_5g12330 FvH4_5g12330 FvH4_5g12330 FvH4_5g12330 FvH4_5g12330
malus_domestica	MD06G1214800.v1.1 MD14G1225700.v1.1
prunus_persica	Prupe.5G220200_v2.0.a1
pyrus_communis	pycom06g19140 pycom14g18690
rosa_chinensis	RchiOBHm_Chr7g0185231
rosa_laevigata	RLG00000004929
rosa_multiflora	Rmu_sc0000213.1_g000005 Rmu_sc0008496.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269120
rosa_rugosa	Rorug06G0467100
rosa_samantha	Rh7AG075800 Rh7BG071600 Rh7CG072800 Rh7DG072200
rosa_wichuraiana	Rw7G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1050
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	1224
AccII	CGCG	1 cut(s)	1299
AciI	CCGC	3 cut(s)	935, 1299, 1302
AclWI	GGATC	5 cut(s)	294, 376, 389, 951, 974
AcoI	YGGCCR	2 cut(s)	848, 1170
AcsI	RAATTY	6 cut(s)	185, 310, 393, 867, 905, 1196
AfaI	GTAC	5 cut(s)	122, 609, 939, 987, 1050
AfiI	CCNNNNNNNGG	2 cut(s)	506, 886
AgsI	TTSAA	6 cut(s)	371, 665, 872, 1009, 1214, 1261
AjnI	CCWGG	2 cut(s)	879, 958
AluBI	AGCT	7 cut(s)	23, 41, 410, 661, 831, 859, 1005
AluI	AGCT	7 cut(s)	23, 41, 410, 661, 831, 859, 1005
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	1241
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	5 cut(s)	294, 376, 389, 951, 974
AoxI	GGCC	3 cut(s)	848, 1085, 1170
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	6 cut(s)	185, 310, 393, 867, 905, 1196
ArsI	GACNNNNNNTTYG	2 cut(s)	1141, 1173
Asp700I	GAANNNNTTC	1 cut(s)	905
AspS9I	GGNCC	2 cut(s)	737, 1311
AsuHPI	GGTGA	2 cut(s)	293, 1256
AvaII	GGWCC	2 cut(s)	737, 1311
AxyI	CCTNAGG	1 cut(s)	1054
BaeGI	GKGCMC	1 cut(s)	565
BalI	TGGCCA	1 cut(s)	1172
BamHI	GGATCC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	1081
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	3 cut(s)	278, 472, 718
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	881, 960
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	1241
BfaI	CTAG	1 cut(s)	1155
BfmI	CTRYAG	3 cut(s)	447, 771, 1089
BfuAI	ACCTGC	1 cut(s)	1050
BfuI	GTATCC	1 cut(s)	428
BglII	AGATCT	3 cut(s)	440, 950, 1077
BisI	GCNGC	2 cut(s)	771, 1300
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	772, 1301
Bme1390I	CCNGG	2 cut(s)	881, 960
Bme18I	GGWCC	2 cut(s)	737, 1311
BmgT120I	GGNCC	2 cut(s)	737, 1311
BmiI	GGNNCC	4 cut(s)	383, 498, 627, 1266
BmrFI	CCNGG	2 cut(s)	881, 960
BmsI	GCATC	2 cut(s)	460, 510
BpiI	GAAGAC	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	533, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	1003, 1033
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 886
Bse1I	ACTGG	3 cut(s)	54, 945, 1046
Bse21I	CCTNAGG	1 cut(s)	1054
Bse3DI	GCAATG	2 cut(s)	219, 593
Bse8I	GATNNNNATC	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	881, 960
BseDI	CCNNGG	2 cut(s)	533, 959
BseGI	GGATG	5 cut(s)	475, 608, 895, 982, 1181
BseJI	GATNNNNATC	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	506, 886
BseMI	GCAATG	2 cut(s)	219, 593
BseMII	CTCAG	4 cut(s)	606, 624, 961, 1068
BseNI	ACTGG	3 cut(s)	54, 945, 1046
BseRI	GAGGAG	2 cut(s)	911, 1008
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	1299
BshFI	GGCC	3 cut(s)	850, 1087, 1172
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	506, 886
BsmAI	GTCTC	1 cut(s)	1241
BsnI	GGCC	3 cut(s)	850, 1087, 1172
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
Bsp1720I	GCTNAGC	1 cut(s)	633
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	3 cut(s)	935, 1299, 1302
BspANI	GGCC	3 cut(s)	850, 1087, 1172
BspCNI	CTCAG	4 cut(s)	607, 625, 960, 1067
BspFNI	CGCG	1 cut(s)	1299
BspHI	TCATGA	2 cut(s)	1068, 1337
BspLI	GGNNCC	4 cut(s)	383, 498, 627, 1266
BspMAI	CTGCAG	2 cut(s)	775, 1093
BspMI	ACCTGC	1 cut(s)	1050
BspPI	GGATC	5 cut(s)	294, 376, 389, 951, 974
BsrDI	GCAATG	2 cut(s)	219, 593
BsrI	ACTGG	3 cut(s)	54, 945, 1046
BssECI	CCNNGG	2 cut(s)	533, 959
BssMI	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
BssSI	CACGAG	1 cut(s)	1081
BssT1I	CCWWGG	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	1081
Bst2UI	CCWGG	2 cut(s)	881, 960
Bst4CI	ACNGT	4 cut(s)	365, 431, 586, 1328
Bst6I	CTCTTC	1 cut(s)	771
BstAPI	GCANNNNNTGC	2 cut(s)	86, 230
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	861, 1003, 1089
BstDEI	CTNAG	7 cut(s)	524, 566, 615, 633, 926, 947, 1054
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	5 cut(s)	475, 608, 895, 982, 1181
BstFNI	CGCG	1 cut(s)	1299
BstKTI	GATC	7 cut(s)	289, 384, 443, 946, 953, 982, 1080
BstMAI	GTCTC	1 cut(s)	1241
BstMBI	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 230, 856, 998
BstNI	CCWGG	2 cut(s)	881, 960
BstSCI	CCNGG	2 cut(s)	879, 958
BstSFI	CTRYAG	3 cut(s)	447, 771, 1089
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	1299
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	6 cut(s)	286, 381, 440, 943, 950, 1077
BstYI	RGATCY	6 cut(s)	286, 381, 440, 943, 950, 1077
Bsu36I	CCTNAGG	1 cut(s)	1054
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	850, 1087, 1172
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	5 cut(s)	475, 608, 895, 982, 1181
BtsIMutI	CAGTG	2 cut(s)	436, 562
BveI	ACCTGC	1 cut(s)	1050
Cac8I	GCNNGC	3 cut(s)	861, 1003, 1089
CciI	TCATGA	2 cut(s)	1068, 1337
Cfr13I	GGNCC	2 cut(s)	737, 1311
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	5 cut(s)	121, 608, 938, 986, 1049
CviQI	GTAC	5 cut(s)	121, 608, 938, 986, 1049
DdeI	CTNAG	7 cut(s)	524, 566, 615, 633, 926, 947, 1054
DpnI	GATC	7 cut(s)	288, 383, 442, 945, 952, 981, 1079
DpnII	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
EaeI	YGGCCR	2 cut(s)	848, 1170
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	737, 1311
Eco81I	CCTNAGG	1 cut(s)	1054
EcoRII	CCWGG	2 cut(s)	879, 958
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	533
FauI	CCCGC	1 cut(s)	1295
FauNDI	CATATG	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	1224
Fnu4HI	GCNGC	2 cut(s)	771, 1300
FokI	GGATG	5 cut(s)	482, 615, 902, 989, 1168
Fsp4HI	GCNGC	2 cut(s)	771, 1300
FspBI	CTAG	1 cut(s)	1155
GluI	GCNGC	2 cut(s)	771, 1300
GsaI	CCCAGC	1 cut(s)	835
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	850, 1087, 1172
HapII	CCGG	1 cut(s)	629
HgaI	GACGC	1 cut(s)	334
HincII	GTYRAC	3 cut(s)	144, 1225, 1273
HindII	GTYRAC	3 cut(s)	144, 1225, 1273
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	5 cut(s)	210, 452, 1133, 1226, 1292
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	293, 1256
Hpy166II	GTNNAC	7 cut(s)	144, 563, 608, 701, 1179, 1225, 1273
Hpy188I	TCNGA	6 cut(s)	415, 477, 616, 826, 950, 1332
Hpy188III	TCNNGA	6 cut(s)	207, 872, 1022, 1056, 1069, 1338
Hpy8I	GTNNAC	7 cut(s)	144, 563, 608, 701, 1179, 1225, 1273
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	332, 396, 674
HpyCH4III	ACNGT	4 cut(s)	365, 431, 586, 1328
HpyCH4IV	ACGT	3 cut(s)	146, 697, 1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 230, 856, 998
HpyF3I	CTNAG	7 cut(s)	524, 566, 615, 633, 926, 947, 1054
HpySE526I	ACGT	3 cut(s)	146, 697, 1175
Kzo9I	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
LmnI	GCTCC	4 cut(s)	496, 631, 658, 856
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	2 cut(s)	460, 510
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	3 cut(s)	146, 697, 1175
MaeIII	GTNAC	7 cut(s)	204, 353, 512, 674, 693, 963, 1293
MalI	GATC	7 cut(s)	288, 383, 442, 945, 952, 981, 1079
MboI	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
MboII	GAAGA	6 cut(s)	47, 550, 651, 788, 803, 1142
MfeI	CAATTG	1 cut(s)	1160
MflI	RGATCY	6 cut(s)	286, 381, 440, 943, 950, 1077
MhlI	GDGCHC	1 cut(s)	565
MlsI	TGGCCA	1 cut(s)	1172
MluNI	TGGCCA	1 cut(s)	1172
MlyI	GAGTC	2 cut(s)	1220, 1301
MmeI	TCCRAC	1 cut(s)	1062
Mox20I	TGGCCA	1 cut(s)	1172
MroXI	GAANNNNTTC	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	1172
MseI	TTAA	1 cut(s)	1104
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	1172
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	881, 960
MunI	CAATTG	1 cut(s)	1160
MvaI	CCWGG	2 cut(s)	881, 960
MvnI	CGCG	1 cut(s)	1299
MwoI	GCNNNNNNNGC	4 cut(s)	86, 230, 856, 998
NcoI	CCATGG	1 cut(s)	533
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
NlaIV	GGNNCC	4 cut(s)	383, 498, 627, 1266
NmuCI	GTSAC	3 cut(s)	204, 963, 1293
PagI	TCATGA	2 cut(s)	1068, 1337
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	3 cut(s)	210, 452, 1133
PflMI	CCANNNNNTGG	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	879
PkrI	GCNGC	2 cut(s)	772, 1301
PleI	GAGTC	2 cut(s)	1220, 1300
PpsI	GAGTC	2 cut(s)	1220, 1300
Ppu21I	YACGTR	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	879, 958
PspFI	CCCAGC	1 cut(s)	831
PspGI	CCWGG	2 cut(s)	879, 958
PspN4I	GGNNCC	4 cut(s)	383, 498, 627, 1266
PspPI	GGNCC	2 cut(s)	737, 1311
PstI	CTGCAG	2 cut(s)	775, 1093
PsuI	RGATCY	6 cut(s)	286, 381, 440, 943, 950, 1077
RsaI	GTAC	5 cut(s)	122, 609, 939, 987, 1050
RsaNI	GTAC	5 cut(s)	121, 608, 938, 986, 1049
RseI	CAYNNNNRTG	1 cut(s)	603
SalI	GTCGAC	1 cut(s)	1223
SaqAI	TTAA	1 cut(s)	1104
SatI	GCNGC	2 cut(s)	771, 1300
Sau3AI	GATC	7 cut(s)	286, 381, 440, 943, 950, 979, 1077
Sau96I	GGNCC	2 cut(s)	737, 1311
SbfI	CCTGCAGG	1 cut(s)	1093
SchI	GAGTC	2 cut(s)	1220, 1301
ScrFI	CCNGG	2 cut(s)	881, 960
SdaI	CCTGCAGG	1 cut(s)	1093
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	460, 510
SfcI	CTRYAG	3 cut(s)	447, 771, 1089
SinI	GGWCC	2 cut(s)	737, 1311
SmiMI	CAYNNNNRTG	1 cut(s)	603
Sse8387I	CCTGCAGG	1 cut(s)	1093
SsiI	CCGC	3 cut(s)	935, 1299, 1302
SspMI	CTAG	1 cut(s)	1155
StyD4I	CCNGG	2 cut(s)	879, 958
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	4 cut(s)	365, 431, 586, 1328
TaiI	ACGT	3 cut(s)	149, 700, 1178
TaqI	TCGA	2 cut(s)	1224, 1323
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	1 cut(s)	1302
TfiI	GAWTC	3 cut(s)	210, 452, 1133
Tru1I	TTAA	1 cut(s)	1104
Tru9I	TTAA	1 cut(s)	1104
TscAI	CASTG	2 cut(s)	436, 562
TseFI	GTSAC	3 cut(s)	204, 963, 1293
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	3 cut(s)	204, 963, 1293
TspDTI	ATGAA	7 cut(s)	122, 145, 304, 771, 927, 1057, 1085
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	436, 562
Van91I	CCANNNNNTGG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	561
VpaK11BI	GGWCC	2 cut(s)	737, 1311
XapI	RAATTY	6 cut(s)	185, 310, 393, 867, 905, 1196
XmiI	GTMKAC	1 cut(s)	1224
XmnI	GAANNNNTTC	1 cut(s)	905
XspI	CTAG	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.