FvH4_5g12771

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017304
Physical Location & Seq
Reverse (-)
7217653 .. 7219805
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12771.t1

Sequence Viewer

Length: 1647 bp
ATGATCATCAAAGTAAGCTTTCTGGCTGCAGCTTCAGTTGCAGCATATGCAATTTCACACAAAAACAGGTGCAATTCCACCAAGAACCATTTCGCCGGTATTAATCCACCAGAGAATGATGAGTCAAATTTCCATCAACAGCAAATTGAAGGAGAGATGGAAGATGGGAAGAAGGCTGAAATTAATAGAAGCAAAGAACTGAAAAGGGTCAATGAAACAGAAGTGTTACATAATCTAGCGAGGGAGGTACAGCAGAGGAAGCTGAGGATTGAGAGGAAATTGCTAGAGCTATGTGAGCTAAGAGAAGAGAAATCTTTTATGTCTCACTTGCAAAGGCATTTGGACGAGAAGTCGTTGGAGATTGAAATTCTCAATTCCACCATTGCTTCAATGCAAACTGAGAGGAAGGATCTCCATGAAGAAGTCAAGCGATGTGTCTTGGCAAGGAAGCAACTGGAGACGGCGAAGAAACTGATACCTGAAATGCAGAAGAAGATGGATTATATTAAAGAGAGCAACATGGAGGTGAAGGGAAGGCTCTTGATTGTGGAGGAACAAGTTTCCAACTTGCCTAGGGATAAAGATGAAGCAAACTCAGTTAGATATGACATAGTTGAGAAGAAGCTCAAAGGTGTTAGAGATGTTGAGATGCAAATTTTCAAGATGAAGAGGAGAAACAAAGAGCTTGAGCTTGGAAAGAGAGAATTGGCAGTCAAATTGGTTGCTGCTCAAGATAAAATTACTGCCCTAACCAACATAACTGAGAGTGAAAACATTGCTAAGATTGGAGAGGAGGTAAGAAAGTTGAGGCACACTAACGACGATTTGTTGAGACGAGTTGAGAGATTACAAAACAACAGATTCGATATGGTCCAACAACTTGTGTACCAGCGCTGGCTCCACACTTGCTTGAGACTTGAAATTGAATCCCACAATGGCAGCAAGATTTCAAATCCCTGCTTTGACAGCGTGTCGCCTCAGACATCTACAACTGATCTGAGCGATGAAGTGTTCGAGACAACTACTGTGGAGTTGGATAGTTCATCATCAAGTAGCCAAAGAAGTAGCACTACTGATAAGAAATCCGGATTCATGCATAGTATTAAAAAGTGGGGTACAAAAAGAAGAAAGGATGAAAGGTCCTCCGGAGGTGACTCCTTCAGCAAAAAAGGCCTAGTTCGCAGGTTTTCGACATCAATGGTGCCGGTGAAAGCTTCAATACTGAAAAACAAAGGTGACAATGCAGTCAAATCAAGAGGACGGAGAGTCTCATTTAGTGATTCAGTTGGTTCAACAGTTCAATCCGAATGTGTCTTCGATGATTCAGTTGGATCAACAGTTCAATCCAAATGTGTATTCGATGATAATGAGAGGTCTGGCTGCAAATCAACAACTAATTCAGCCGAAAATGGTAACTCTGAACTTGAAGAAGAGACACACTATGAGCATGCATCATCACCAGATGTGACTATTTCTTGTACCACTCCCAACACCGTCAAAGAAGACAGCAGCATTACTCAAGTAAACAGGACTGAAACGGCTTCCTATAGTAACCAGGAAAACAAGGTTGACACCGATGTTGTGGGACTTATTGCTGCTTTGTTCTTCCTCCTCTTCATCTTATTAGTTGCCTGTTTTAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

549

Amino Acids

62.36

Weight (kDa)

8.18

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017304)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12771
malus_domestica MD06G1210200.v1.1
prunus_persica Prupe.5G216400_v2.0.a1
pyrus_communis pycom06g18790
rosa_chinensis RchiOBHm_Chr7g0184451
rosa_laevigata RLG00000004974
rosa_multiflora Rmu_sc0001557.1_g000015
rosa_roxburghii Rroxscaffold_3G00269600
rosa_samantha Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400
rosa_wichuraiana Rw7G005550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1244
Acc36I ACCTGC 1 cut(s) 1173
AccB1I GGYRCC 1 cut(s) 1201
AccIII TCCGGA 2 cut(s) 1085, 1145
AclWI GGATC 2 cut(s) 417, 1339
AcsI RAATTY 4 cut(s) 127, 366, 654, 1640
AcuI CTGAAG 2 cut(s) 18, 1144
AfaI GTAC 4 cut(s) 249, 887, 1117, 1480
AfeI AGCGCT 1 cut(s) 893
AhdI GACNNNNNGTC 3 cut(s) 349, 970, 1265
AjnI CCWGG 1 cut(s) 1554
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 1340, 1372
AloI GAACNNNNNNTCC 2 cut(s) 1323, 1355
AluBI AGCT 9 cut(s) 18, 32, 262, 289, 298, 625, 685, 691, 1214
AluI AGCT 9 cut(s) 18, 32, 262, 289, 298, 625, 685, 691, 1214
Alw26I GTCTC 7 cut(s) 327, 452, 826, 907, 1010, 1273, 1427
AlwI GGATC 2 cut(s) 417, 1339
Aor13HI TCCGGA 2 cut(s) 1085, 1145
Aor51HI AGCGCT 1 cut(s) 893
AoxI GGCC 1 cut(s) 1171
ApeKI GCWGC 8 cut(s) 26, 29, 41, 725, 939, 1380, 1509, 1595
ApoI RAATTY 4 cut(s) 127, 366, 654, 1640
AseI ATTAAT 2 cut(s) 102, 183
Asp700I GAANNNNTTC 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 871, 1140
AsuHPI GGTGA 5 cut(s) 538, 1163, 1219, 1247, 1449
AvaII GGWCC 2 cut(s) 871, 1140
AvrII CCTAGG 1 cut(s) 572
BaeI ACNNNNGTAYC 2 cut(s) 869, 902
BanI GGYRCC 1 cut(s) 1201
BarI GAAGNNNNNNTAC 2 cut(s) 1054, 1086
BbsI GAAGAC 2 cut(s) 1306, 1509
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 8 cut(s) 13, 41, 53, 712, 951, 1367, 1521, 1582
BccI CCATC 4 cut(s) 141, 151, 158, 490
BceAI ACGGC 2 cut(s) 477, 1554
BciT130I CCWGG 1 cut(s) 1556
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 7 cut(s) 327, 452, 826, 907, 1010, 1273, 1427
BfaI CTAG 4 cut(s) 236, 284, 573, 1175
BfmI CTRYAG 2 cut(s) 27, 1546
BfoI RGCGCY 1 cut(s) 895
BfuAI ACCTGC 1 cut(s) 1173
BisI GCNGC 8 cut(s) 27, 30, 42, 726, 940, 1381, 1510, 1596
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 8 cut(s) 28, 31, 43, 727, 941, 1382, 1511, 1597
Bme1390I CCNGG 1 cut(s) 1556
Bme18I GGWCC 2 cut(s) 871, 1140
BmeRI GACNNNNNGTC 3 cut(s) 349, 970, 1265
BmgT120I GGNCC 2 cut(s) 871, 1140
BmiI GGNNCC 2 cut(s) 899, 1203
BmrFI CCNGG 1 cut(s) 1556
BmsI GCATC 2 cut(s) 639, 1460
BpiI GAAGAC 2 cut(s) 1306, 1509
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 263
BpuEI CTTGAG 4 cut(s) 707, 714, 931, 1503
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 2 cut(s) 1085, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bse118I RCCGGY 2 cut(s) 95, 1204
Bse1I ACTGG 1 cut(s) 459
Bse3DI GCAATG 2 cut(s) 381, 774
BseAI TCCGGA 2 cut(s) 1085, 1145
BseBI CCWGG 1 cut(s) 1556
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 1138
BseMI GCAATG 2 cut(s) 381, 774
BseMII CTCAG 6 cut(s) 254, 390, 609, 753, 989, 992
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 3 cut(s) 685, 806, 1601
BseXI GCAGC 8 cut(s) 13, 41, 53, 712, 951, 1367, 1521, 1582
BshFI GGCC 1 cut(s) 1173
BshNI GGYRCC 1 cut(s) 1201
BsiSI CCGG 4 cut(s) 96, 1086, 1146, 1205
BslFI GGGAC 1 cut(s) 1599
BsmAI GTCTC 7 cut(s) 327, 452, 826, 907, 1010, 1273, 1427
BsmBI CGTCTC 2 cut(s) 452, 826
BsmFI GGGAC 1 cut(s) 1599
BsnI GGCC 1 cut(s) 1173
Bsp13I TCCGGA 2 cut(s) 1085, 1145
Bsp143I GATC 4 cut(s) 3, 409, 994, 1331
BspANI GGCC 1 cut(s) 1173
BspCNI CTCAG 6 cut(s) 255, 391, 608, 754, 990, 991
BspEI TCCGGA 2 cut(s) 1085, 1145
BspLI GGNNCC 2 cut(s) 899, 1203
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 1173
BspPI GGATC 2 cut(s) 417, 1339
BspT107I GGYRCC 1 cut(s) 1201
BsrDI GCAATG 2 cut(s) 381, 774
BsrFI RCCGGY 2 cut(s) 95, 1204
BsrI ACTGG 1 cut(s) 459
BssAI RCCGGY 2 cut(s) 95, 1204
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 4 cut(s) 3, 409, 994, 1331
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 1556
Bst4CI ACNGT 4 cut(s) 1027, 1297, 1339, 1495
Bst6I CTCTTC 4 cut(s) 300, 662, 1425, 1619
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 896, 1449
BstDEI CTNAG 8 cut(s) 263, 299, 399, 595, 762, 780, 978, 998
BstF5I GGATG 1 cut(s) 1138
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 4 cut(s) 6, 412, 997, 1334
BstMAI GTCTC 7 cut(s) 327, 452, 826, 907, 1010, 1273, 1427
BstMBI GATC 4 cut(s) 3, 409, 994, 1331
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 966, 1170, 1179
BstNI CCWGG 1 cut(s) 1556
BstNSI RCATGY 1 cut(s) 1451
BstSCI CCNGG 1 cut(s) 1554
BstSFI CTRYAG 2 cut(s) 27, 1546
BstV1I GCAGC 8 cut(s) 13, 41, 53, 712, 951, 1367, 1521, 1582
BstV2I GAAGAC 2 cut(s) 1306, 1509
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 1173
BtgZI GCGATG 2 cut(s) 445, 1017
BtsCI GGATG 1 cut(s) 1138
BveI ACCTGC 1 cut(s) 1173
Cac8I GCNNGC 2 cut(s) 896, 1449
CfoI GCGC 1 cut(s) 894
Cfr10I RCCGGY 2 cut(s) 95, 1204
Cfr13I GGNCC 2 cut(s) 871, 1140
Csp6I GTAC 4 cut(s) 248, 886, 1116, 1479
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 4 cut(s) 416, 520, 1093, 1448
CviQI GTAC 4 cut(s) 248, 886, 1116, 1479
DdeI CTNAG 8 cut(s) 263, 299, 399, 595, 762, 780, 978, 998
DpnI GATC 4 cut(s) 5, 411, 996, 1333
DpnII GATC 4 cut(s) 3, 409, 994, 1331
DraI TTTAAA 1 cut(s) 1639
DrdI GACNNNNNNGTC 1 cut(s) 1244
DriI GACNNNNNGTC 3 cut(s) 349, 970, 1265
DseDI GACNNNNNNGTC 1 cut(s) 1244
Eam1104I CTCTTC 4 cut(s) 300, 662, 1425, 1619
Eam1105I GACNNNNNGTC 3 cut(s) 349, 970, 1265
EarI CTCTTC 4 cut(s) 300, 662, 1425, 1619
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 871, 1140
Eco47III AGCGCT 1 cut(s) 893
Eco57I CTGAAG 2 cut(s) 18, 1144
EcoO109I RGGNCCY 1 cut(s) 1140
EcoRII CCWGG 1 cut(s) 1554
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 2 cut(s) 1098, 1453
ErhI CCWWGG 1 cut(s) 572
Esp3I CGTCTC 2 cut(s) 452, 826
FaeI CATG 4 cut(s) 419, 523, 1096, 1451
FaqI GGGAC 1 cut(s) 1599
FatI CATG 4 cut(s) 415, 519, 1092, 1447
FauNDI CATATG 1 cut(s) 46
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 8 cut(s) 27, 30, 42, 726, 940, 1381, 1510, 1596
FokI GGATG 1 cut(s) 1145
Fsp4HI GCNGC 8 cut(s) 27, 30, 42, 726, 940, 1381, 1510, 1596
FspBI CTAG 4 cut(s) 236, 284, 573, 1175
GlaI GCGC 1 cut(s) 893
GluI GCNGC 8 cut(s) 27, 30, 42, 726, 940, 1381, 1510, 1596
GsuI CTGGAG 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 895
HaeIII GGCC 1 cut(s) 1173
HapII CCGG 4 cut(s) 96, 1086, 1146, 1205
HhaI GCGC 1 cut(s) 894
Hin1II CATG 4 cut(s) 419, 523, 1096, 1451
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 1570
HindII GTYRAC 1 cut(s) 1570
HindIII AAGCTT 2 cut(s) 16, 1212
HinfI GANTC 8 cut(s) 122, 861, 926, 1089, 1154, 1266, 1280, 1322
HpaII CCGG 4 cut(s) 96, 1086, 1146, 1205
HphI GGTGA 5 cut(s) 538, 1163, 1219, 1247, 1449
Hpy166II GTNNAC 3 cut(s) 886, 1525, 1570
Hpy188I TCNGA 4 cut(s) 981, 999, 1306, 1420
Hpy188III TCNNGA 7 cut(s) 541, 661, 731, 1015, 1086, 1146, 1254
Hpy8I GTNNAC 3 cut(s) 886, 1525, 1570
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 6 cut(s) 143, 166, 400, 523, 528, 1168
HpyCH4III ACNGT 4 cut(s) 1027, 1297, 1339, 1495
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 966, 1170, 1179
HpyF3I CTNAG 8 cut(s) 263, 299, 399, 595, 762, 780, 978, 998
Hsp92II CATG 4 cut(s) 419, 523, 1096, 1451
HspAI GCGC 1 cut(s) 892
Kpn2I TCCGGA 2 cut(s) 1085, 1145
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 409, 994, 1331
LmnI GCTCC 1 cut(s) 903
Lsp1109I GCAGC 8 cut(s) 13, 41, 53, 712, 951, 1367, 1521, 1582
LweI GCATC 2 cut(s) 639, 1460
MaeI CTAG 4 cut(s) 236, 284, 573, 1175
MaeIII GTNAC 6 cut(s) 225, 1151, 1235, 1412, 1465, 1550
MalI GATC 4 cut(s) 5, 411, 996, 1333
MboI GATC 4 cut(s) 3, 409, 994, 1331
MflI RGATCY 1 cut(s) 409
MlyI GAGTC 3 cut(s) 131, 1148, 1275
MmeI TCCRAC 5 cut(s) 336, 588, 898, 1014, 1309
Mph1103I ATGCAT 2 cut(s) 1098, 1453
MroI TCCGGA 2 cut(s) 1085, 1145
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 5 cut(s) 102, 183, 507, 1104, 1638
MslI CAYNNNNRTG 1 cut(s) 524
MspI CCGG 4 cut(s) 96, 1086, 1146, 1205
MspR9I CCNGG 1 cut(s) 1556
MvaI CCWGG 1 cut(s) 1556
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 966, 1170, 1179
NdeI CATATG 1 cut(s) 46
NdeII GATC 4 cut(s) 3, 409, 994, 1331
NlaIII CATG 4 cut(s) 419, 523, 1096, 1451
NlaIV GGNNCC 2 cut(s) 899, 1203
NmuCI GTSAC 3 cut(s) 1151, 1235, 1465
NsiI ATGCAT 2 cut(s) 1098, 1453
NspI RCATGY 1 cut(s) 1451
PaeI GCATGC 1 cut(s) 1451
PceI AGGCCT 1 cut(s) 1173
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 5 cut(s) 861, 926, 1089, 1280, 1322
PkrI GCNGC 8 cut(s) 28, 31, 43, 727, 941, 1382, 1511, 1597
PleI GAGTC 3 cut(s) 130, 1148, 1274
PpsI GAGTC 3 cut(s) 130, 1148, 1274
PpuMI RGGWCCY 1 cut(s) 1140
PshBI ATTAAT 2 cut(s) 102, 183
Psp5II RGGWCCY 1 cut(s) 1140
Psp6I CCWGG 1 cut(s) 1554
PspGI CCWGG 1 cut(s) 1554
PspN4I GGNNCC 2 cut(s) 899, 1203
PspPI GGNCC 2 cut(s) 871, 1140
PspPPI RGGWCCY 1 cut(s) 1140
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 4 cut(s) 249, 887, 1117, 1480
RsaNI GTAC 4 cut(s) 248, 886, 1116, 1479
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 5 cut(s) 102, 183, 507, 1104, 1638
SatI GCNGC 8 cut(s) 27, 30, 42, 726, 940, 1381, 1510, 1596
Sau3AI GATC 4 cut(s) 3, 409, 994, 1331
Sau96I GGNCC 2 cut(s) 871, 1140
SchI GAGTC 3 cut(s) 131, 1148, 1275
ScrFI CCNGG 1 cut(s) 1556
SfaNI GCATC 2 cut(s) 639, 1460
SfcI CTRYAG 2 cut(s) 27, 1546
SinI GGWCC 2 cut(s) 871, 1140
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 4 cut(s) 686, 729, 910, 1518
SmoI CTYRAG 4 cut(s) 686, 729, 910, 1518
SphI GCATGC 1 cut(s) 1451
SseBI AGGCCT 1 cut(s) 1173
SspMI CTAG 4 cut(s) 236, 284, 573, 1175
StuI AGGCCT 1 cut(s) 1173
StyD4I CCNGG 1 cut(s) 1554
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 4 cut(s) 1027, 1297, 1339, 1495
TaqI TCGA 5 cut(s) 864, 1014, 1190, 1317, 1359
TfiI GAWTC 5 cut(s) 861, 926, 1089, 1280, 1322
Tru1I TTAA 5 cut(s) 102, 183, 507, 1104, 1638
Tru9I TTAA 5 cut(s) 102, 183, 507, 1104, 1638
TseFI GTSAC 3 cut(s) 1151, 1235, 1465
TseI GCWGC 8 cut(s) 26, 29, 41, 725, 939, 1380, 1509, 1595
Tsp45I GTSAC 3 cut(s) 1151, 1235, 1465
TspDTI ATGAA 9 cut(s) 228, 432, 600, 680, 1020, 1032, 1081, 1149, 1606
TspGWI ACGGA 1 cut(s) 1276
VpaK11BI GGWCC 2 cut(s) 871, 1140
VspI ATTAAT 2 cut(s) 102, 183
XapI RAATTY 4 cut(s) 127, 366, 654, 1640
XceI RCATGY 1 cut(s) 1451
XmaJI CCTAGG 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 4 cut(s) 236, 284, 573, 1175
Zsp2I ATGCAT 2 cut(s) 1098, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.