Rw7G005550

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017304
Physical Location & Seq
Forward (+)
4648430 .. 4650764
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005550.1

Sequence Viewer

Length: 1326 bp
ATGTCTCACTTGCAAAGGCATCTAGACGACAAGTCGTTGGAGATTGAAATGCTCAATGCCACCATTGCTTCAATGCGGACTGAGAGAAAAGATCTTCATGAAGATGCCAAGCAATGTGTCTTGGCAAGGAAGCAACTGGAAACGGCGAGGAAAGTGATAGCAGAATTGCAGAAGAAGATGAATTATTGTAATGAGAGCAACATGAAGGTGAAGGGAAGGCTGTTGATTGTGGAAGAACAAGTTTCCAACCTGCCTAGGGATATAGATGAAAGAAGCTCAGTTAGAGATGCTATAGTTGAGAAGAAGCTCAAAGGTGTGAGAGATGTTGAGTTACAAATTTTGAAGATGAAGAGGAGAAACAAAGAGCTTGAGCTTGGAAAGAGAGAATTAGCAGTCAAATTGGTTTCTGCTCAAGATAAAATTACTGCCCTTTCCAACATAACTGAGAGTGAAAGCATTGCCAAGATTGGAGAGGAGATCAGCAAGTTGAGGCATGCTAATGAAGACTTGTCGAGACAAGTCGAGAGGTTACAGAACAACAGATTTGATATGGTCCAACAGCTTGTGTACCAGCGCTGGCTCCACACTTGTTTGAGACTTGAAATTCAATCCCACAATAGCAGCAAGATTTCAAATCCCACCTATGACAGTGCGTCCCCTCAGACATCTACGACTACTCTGAGTGATGAAATGTTCGAGACAACTACCGTGGAGTTGGATAGCTCAACTTCAAGTAGCCAAAGAAGTAGCAGTACTGATAAGAAATCTGGTTTCATGCATAGTATTAAAAGGTGGGGTATTAGAAAAAGCAAGGATGCAAGGTCCTCTGAAGGTAACTCCTTCAGCAAGAAAGGCCTAGTTCGCAGGTTTTCGACATCAATGGTTCCGGAGAAAGCTTCAATACTGAGAAACAAAGGTGACAATGCAGTCAAATCAAGAGGAAGGAGAGTCTCATTTACTGATTCAGTTGGATCAACAGTTCAATCCGAATGTGTATTCGATGATCATAAGGAAATAGGAGCTGATGAGAGGTCTCTCTGCAACTCAACGACTAATTCACCTCAAAATGGTAACATTGAAATCAAAGGGGAGACACACGATGAGCCTGCATCATCACCTGAAGTGACTATTTCTTGTAACACTCCACACACCATCAAGGAAGAAAGCAGCATTACTCAAGTAAACAAGACTGAAATAGCTATGTCTTCCTTTGGTAATCAGGAAAACAAGGTTGACACCAATGCTATAGGACTTGTTGCTGCTTTGTTTTTCATTCTCTTCGTCTTAGTTGCCTGTTCTACATTTTATTCAGCTAGACCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

49.62

Weight (kDa)

8.79

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017304)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12771
malus_domestica MD06G1210200.v1.1
prunus_persica Prupe.5G216400_v2.0.a1
pyrus_communis pycom06g18790
rosa_chinensis RchiOBHm_Chr7g0184451
rosa_laevigata RLG00000004974
rosa_multiflora Rmu_sc0001557.1_g000015
rosa_roxburghii Rroxscaffold_3G00269600
rosa_samantha Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400
rosa_wichuraiana Rw7G005550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 926
Acc36I ACCTGC 2 cut(s) 258, 855
AccIII TCCGGA 1 cut(s) 886
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 979
AcsI RAATTY 2 cut(s) 336, 603
AcuI CTGAAG 3 cut(s) 826, 849, 1140
AfaI GTAC 2 cut(s) 569, 754
AfeI AGCGCT 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 256, 1067
AhdI GACNNNNNGTC 2 cut(s) 31, 652
AloI GAACNNNNNNTCC 2 cut(s) 963, 995
Alw26I GTCTC 7 cut(s) 9, 508, 589, 692, 955, 1038, 1085
AlwI GGATC 1 cut(s) 979
Aor13HI TCCGGA 1 cut(s) 886
Aor51HI AGCGCT 1 cut(s) 575
AoxI GGCC 1 cut(s) 853
ApeKI GCWGC 3 cut(s) 621, 1167, 1259
ApoI RAATTY 2 cut(s) 336, 603
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 2 cut(s) 553, 822
AsuHPI GGTGA 4 cut(s) 220, 929, 1050, 1107
AvaII GGWCC 2 cut(s) 553, 822
AvrII CCTAGG 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 736, 768
BbsI GAAGAC 2 cut(s) 510, 1197
BbvI GCAGC 3 cut(s) 633, 1179, 1246
BccI CCATC 1 cut(s) 1160
BceAI ACGGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 7 cut(s) 9, 508, 589, 692, 955, 1038, 1085
BfaI CTAG 4 cut(s) 23, 255, 857, 1314
BfmI CTRYAG 2 cut(s) 291, 1245
BfoI RGCGCY 1 cut(s) 577
BfuAI ACCTGC 2 cut(s) 258, 855
BglII AGATCT 1 cut(s) 91
BisI GCNGC 3 cut(s) 622, 1168, 1260
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 3 cut(s) 623, 1169, 1261
BmcAI AGTACT 1 cut(s) 754
Bme18I GGWCC 2 cut(s) 553, 822
BmeRI GACNNNNNGTC 2 cut(s) 31, 652
BmgT120I GGNCC 2 cut(s) 553, 822
BmiI GGNNCC 2 cut(s) 581, 885
BmsI GCATC 5 cut(s) 28, 94, 277, 805, 1118
BpiI GAAGAC 2 cut(s) 510, 1197
BpuEI CTTGAG 3 cut(s) 389, 396, 1161
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 2 cut(s) 254, 708
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 1067
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 3 cut(s) 63, 119, 456
BseAI TCCGGA 1 cut(s) 886
BseDI CCNNGG 2 cut(s) 254, 708
BseGI GGATG 1 cut(s) 820
BseLI CCNNNNNNNGG 2 cut(s) 256, 1067
BseMI GCAATG 3 cut(s) 63, 119, 456
BseMII CTCAG 6 cut(s) 72, 291, 435, 671, 674, 896
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 367, 488
BseXI GCAGC 3 cut(s) 633, 1179, 1246
BshFI GGCC 1 cut(s) 855
BsiSI CCGG 1 cut(s) 887
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 256, 1067
BsmAI GTCTC 7 cut(s) 9, 508, 589, 692, 955, 1038, 1085
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 1 cut(s) 855
Bso31I GGTCTC 1 cut(s) 1038
Bsp13I TCCGGA 1 cut(s) 886
Bsp143I GATC 4 cut(s) 91, 477, 971, 1003
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 6 cut(s) 73, 290, 436, 672, 673, 897
BspEI TCCGGA 1 cut(s) 886
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 581, 885
BspMI ACCTGC 2 cut(s) 258, 855
BspPI GGATC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 1038
BsrDI GCAATG 3 cut(s) 63, 119, 456
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 254, 708
BssMI GATC 4 cut(s) 91, 477, 971, 1003
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 650, 709, 979
Bst6I CTCTTC 2 cut(s) 344, 1283
BstC8I GCNNGC 3 cut(s) 495, 578, 1107
BstDEI CTNAG 7 cut(s) 81, 277, 444, 660, 680, 905, 1285
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 1 cut(s) 820
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 4 cut(s) 94, 480, 974, 1006
BstMAI GTCTC 7 cut(s) 9, 508, 589, 692, 955, 1038, 1085
BstMBI GATC 4 cut(s) 91, 477, 971, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 65, 852, 861
BstNSI RCATGY 1 cut(s) 497
BstSFI CTRYAG 2 cut(s) 291, 1245
BstV1I GCAGC 3 cut(s) 633, 1179, 1246
BstV2I GAAGAC 2 cut(s) 510, 1197
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 2 cut(s) 258, 855
Cac8I GCNNGC 3 cut(s) 495, 578, 1107
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 553, 822
CseI GACGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 568, 753
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 4 cut(s) 98, 202, 494, 775
CviQI GTAC 2 cut(s) 568, 753
DdeI CTNAG 7 cut(s) 81, 277, 444, 660, 680, 905, 1285
DpnI GATC 4 cut(s) 93, 479, 973, 1005
DpnII GATC 4 cut(s) 91, 477, 971, 1003
DrdI GACNNNNNNGTC 1 cut(s) 926
DriI GACNNNNNGTC 2 cut(s) 31, 652
DseDI GACNNNNNNGTC 1 cut(s) 926
Eam1104I CTCTTC 2 cut(s) 344, 1283
Eam1105I GACNNNNNGTC 2 cut(s) 31, 652
EarI CTCTTC 2 cut(s) 344, 1283
Eco130I CCWWGG 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 1038
Eco47I GGWCC 2 cut(s) 553, 822
Eco47III AGCGCT 1 cut(s) 575
Eco57I CTGAAG 3 cut(s) 826, 849, 1140
EcoO109I RGGNCCY 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 101, 205, 497, 778
FaqI GGGAC 1 cut(s) 640
FatI CATG 4 cut(s) 97, 201, 493, 774
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 3 cut(s) 622, 1168, 1260
FokI GGATG 1 cut(s) 827
Fsp4HI GCNGC 3 cut(s) 622, 1168, 1260
FspBI CTAG 4 cut(s) 23, 255, 857, 1314
GlaI GCGC 1 cut(s) 575
GluI GCNGC 3 cut(s) 622, 1168, 1260
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 1 cut(s) 855
HapII CCGG 1 cut(s) 887
HgaI GACGC 1 cut(s) 642
HhaI GCGC 1 cut(s) 576
Hin1II CATG 4 cut(s) 101, 205, 497, 778
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 2 cut(s) 948, 962
HpaII CCGG 1 cut(s) 887
HphI GGTGA 4 cut(s) 220, 929, 1050, 1107
Hpy166II GTNNAC 3 cut(s) 568, 1183, 1234
Hpy188I TCNGA 4 cut(s) 663, 681, 829, 988
Hpy188III TCNNGA 9 cut(s) 23, 98, 413, 513, 523, 697, 887, 936, 1220
Hpy8I GTNNAC 3 cut(s) 568, 1183, 1234
HpyAV CCTTC 6 cut(s) 199, 205, 210, 824, 850, 936
HpyCH4III ACNGT 3 cut(s) 650, 709, 979
HpyCH4V TGCA 7 cut(s) 13, 169, 778, 818, 926, 1041, 1109
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 852, 861
HpyF3I CTNAG 7 cut(s) 81, 277, 444, 660, 680, 905, 1285
Hsp92II CATG 4 cut(s) 101, 205, 497, 778
HspAI GCGC 1 cut(s) 574
Kpn2I TCCGGA 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 4 cut(s) 91, 477, 971, 1003
LmnI GCTCC 2 cut(s) 585, 1019
Lsp1109I GCAGC 3 cut(s) 633, 1179, 1246
LweI GCATC 5 cut(s) 28, 94, 277, 805, 1118
MaeI CTAG 4 cut(s) 23, 255, 857, 1314
MaeIII GTNAC 7 cut(s) 330, 528, 833, 917, 1070, 1123, 1136
MalI GATC 4 cut(s) 93, 479, 973, 1005
MboI GATC 4 cut(s) 91, 477, 971, 1003
MflI RGATCY 1 cut(s) 91
MluCI AATT 8 cut(s) 164, 181, 336, 386, 398, 420, 603, 1054
MlyI GAGTC 1 cut(s) 957
MmeI TCCRAC 6 cut(s) 18, 270, 459, 580, 696, 949
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 886
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 3 cut(s) 102, 206, 498
MspI CCGG 1 cut(s) 887
MwoI GCNNNNNNNGC 3 cut(s) 65, 852, 861
NdeII GATC 4 cut(s) 91, 477, 971, 1003
NlaIII CATG 4 cut(s) 101, 205, 497, 778
NlaIV GGNNCC 2 cut(s) 581, 885
NmuCI GTSAC 2 cut(s) 917, 1123
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 497
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 855
PfeI GAWTC 1 cut(s) 962
PkrI GCNGC 3 cut(s) 623, 1169, 1261
PleI GAGTC 1 cut(s) 956
PpsI GAGTC 1 cut(s) 956
PpuMI RGGWCCY 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 822
PspN4I GGNNCC 2 cut(s) 581, 885
PspPI GGNCC 2 cut(s) 553, 822
PspPPI RGGWCCY 1 cut(s) 822
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 569, 754
RsaNI GTAC 2 cut(s) 568, 753
RseI CAYNNNNRTG 3 cut(s) 102, 206, 498
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 3 cut(s) 622, 1168, 1260
Sau3AI GATC 4 cut(s) 91, 477, 971, 1003
Sau96I GGNCC 2 cut(s) 553, 822
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 1 cut(s) 957
SfaNI GCATC 5 cut(s) 28, 94, 277, 805, 1118
SfcI CTRYAG 2 cut(s) 291, 1245
SinI GGWCC 2 cut(s) 553, 822
SmiMI CAYNNNNRTG 3 cut(s) 102, 206, 498
SmlI CTYRAG 3 cut(s) 368, 411, 1176
SmoI CTYRAG 3 cut(s) 368, 411, 1176
SphI GCATGC 1 cut(s) 497
Sse9I AATT 8 cut(s) 164, 181, 336, 386, 398, 420, 603, 1054
SseBI AGGCCT 1 cut(s) 855
SsiI CCGC 1 cut(s) 76
SspMI CTAG 4 cut(s) 23, 255, 857, 1314
StuI AGGCCT 1 cut(s) 855
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 650, 709, 979
TaqI TCGA 5 cut(s) 512, 522, 696, 872, 999
TasI AATT 8 cut(s) 164, 181, 336, 386, 398, 420, 603, 1054
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 1 cut(s) 962
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 917, 1123
TseI GCWGC 3 cut(s) 621, 1167, 1259
Tsp45I GTSAC 2 cut(s) 917, 1123
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 553, 822
XapI RAATTY 2 cut(s) 336, 603
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 497
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 4 cut(s) 23, 255, 857, 1314
ZrmI AGTACT 1 cut(s) 754
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.