pycom06g18790

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0017304
Physical Location & Seq
Forward (+)
22380749 .. 22383376
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18790.3

Sequence Viewer

Length: 1674 bp
ATGATGATCCAGGTGAGCTTTCTGGCTGCAGCTACATTTGCAGCATTTGCAGTTTCTCACAAAAACTGCAACTCCACCAGGAAGCAATTGTGCACTGCCATCGATCCTCCAGAGAAAGATGATTCAAACTTCCACCAGCAGGAGAGAGAAGGAGAGATGGAAGATGAGGAGGCGGCTGAAATTATTACCAGACGTGAACAATTGAAGAGTCACAAGAGTGTGAAAGAAATAGAGCTGTTGCATAATCTAGTGAGAGAATTGCAGCAGAGGAATCTGAGAATTGAAAGAAAATTGATGGAATTATGTGTTCTAAAAGAAGAGCAATCATACATGACTCAGTTGCAAAGGAATCTAGATGAAAAGGCGGTGGAGCTTGACATGCTCAACGCCACCATTGCTTCTTTGCAGGCTGAGAGGAAGGTTCTTATGGAAGATGTGAAGCAGTGTGGTTTGGTGAAGAAGCAGCTAGACGCGGCGAAGAAAATGATAGCTGAAATGCAAAGGAGGATGGAATATTCTGGCAAGAATGACGTAAAGGGGAGGTTGTTGGTGGTGGGAGAACAAGTTTCTAGGTTTCCCAAGGATGAAATGTGTATTAGAGATGAACTAGTTGAGAAGAAGCTGAAAGGTGTGAAAAATGTTGAGTTGGAAGTATTGAAGATGAAGAGGAGGAACAAAGAGCTTGAGCTAGAAAAGAGGGAATTGGCAGTCAAATTGGTTTGTGCACAAACCAGAATCACTACTTTGTCTAGCATGAATGAGAGTGAAACCATTGCCAAGGCTGAAGAAGAAGTAAGCAAGTTGAAACACACCAATGAGGACCTCTCGAGACAAGTCGAAAAACTGCAGAAAAACAGATTTGACATGGTGGAACAACTTGTGTACCAGCGGTGGCTCTACGCTTGCTTGCGATTCGAAACCCTAATCCACAGCAGCCCATCACCGGACACTTCAAAACATGATCTCAGCCCTTCATCTCACACTTCATCTGCTAGTTTGAGCGATGAAATAACCGAGACAACCACCATTGGCAGCTCTTCAAGCAGCCAAAGTAATAAGATTAAGAAGTCTGGTTTCATGCAGAATATTAAGACGTGGGGAGGAAGAAGAAGAAGAAGAAGAAGCAAGGAGGAGGAGGAGGAGGACATGGATTATTCAAATGCCCTTCCAAGCAAGAGAGACCTTGTTCGGAGGTTTTCGACGTCGATGGTTCCGGTGAAGGCTTCCATGTTAAGAAACGGAGGTGAGAGCAGCACAACCAGCTCTTCTTCTCCATCCTCCAGGGCTCCAAGTTTATCTAGGGTTAGAAGGGTGTCGTTCAGCGATTCAGTCAAATCAACGTCCCGTGATTATTCAACTCCAAAGTCAGCTGATCGGACGTCTGGAACAATTGCGATGGATTCAACCCAAAATTACAACAATGTTCATGAATTGGAGGGAGAAATGCATGAACTCGAAGCATCACCAGAAGTGACAATTTCTGCAAGTCCTGAATTCATGAAAAGTGACAGCAATATTGCTTATCAAGTAAACAACAGTACTGAAATTTCAGACACCGATGCTTTGCGTTGTGTGGTTGTTGCTGAGGAGAACGAGGTGGACAGCAGTATTGTAGGTTTTGTTGCTGCATTATTTTTCTTCCTCTTTATATTAGTTGTGACTCGCATGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

558

Amino Acids

63.33

Weight (kDa)

6.45

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017304)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12771
malus_domestica MD06G1210200.v1.1
prunus_persica Prupe.5G216400_v2.0.a1
pyrus_communis pycom06g18790
rosa_chinensis RchiOBHm_Chr7g0184451
rosa_laevigata RLG00000004974
rosa_multiflora Rmu_sc0001557.1_g000015
rosa_roxburghii Rroxscaffold_3G00269600
rosa_samantha Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400
rosa_wichuraiana Rw7G005550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1672
AatII GACGTC 2 cut(s) 1205, 1382
AccII CGCG 1 cut(s) 473
AciI CCGC 4 cut(s) 173, 365, 473, 889
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 1493, 1545
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 2 cut(s) 1202, 1379
AfaI GTAC 2 cut(s) 884, 1540
AfiI CCNNNNNNNGG 2 cut(s) 139, 943
AhlI ACTAGT 1 cut(s) 607
AjiI CACGTC 2 cut(s) 194, 1095
AjnI CCWGG 3 cut(s) 9, 77, 1280
AleI CACNNNNGTG 1 cut(s) 216
Alw21I GWGCWC 2 cut(s) 95, 727
Alw26I GTCTC 3 cut(s) 823, 1010, 1173
Alw44I GTGCAC 2 cut(s) 91, 723
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 826
ApaLI GTGCAC 2 cut(s) 91, 723
ApoI RAATTY 2 cut(s) 1493, 1545
AspS9I GGNCC 1 cut(s) 820
AsuHPI GGTGA 6 cut(s) 25, 466, 933, 1228, 1256, 1455
AsuII TTCGAA 1 cut(s) 915
AvaI CYCGRG 1 cut(s) 826
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 2 cut(s) 95, 727
BaeI ACNNNNGTAYC 2 cut(s) 866, 899
BanII GRGCYC 1 cut(s) 1288
Bbv12I GWGCWC 2 cut(s) 95, 727
BbvCI CCTCAGC 1 cut(s) 1584
BccI CCATC 8 cut(s) 107, 151, 289, 502, 946, 1201, 1282, 1390
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 3 cut(s) 11, 79, 1282
BcoDI GTCTC 3 cut(s) 823, 1010, 1173
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 9 cut(s) 248, 353, 467, 570, 608, 689, 750, 993, 1299
BfmI CTRYAG 2 cut(s) 27, 845
BmcAI AGTACT 1 cut(s) 1540
Bme1390I CCNGG 3 cut(s) 11, 79, 1282
Bme18I GGWCC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 826
BmgBI CACGTC 2 cut(s) 194, 1095
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 1212, 1287
BmrFI CCNGG 3 cut(s) 11, 79, 1282
BmsI GCATC 2 cut(s) 1469, 1549
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 2 cut(s) 93, 1264
Bpu10I CCTNAGC 1 cut(s) 1584
Bpu14I TTCGAA 1 cut(s) 915
BpuEI CTTGAG 1 cut(s) 704
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 2 cut(s) 1202, 1379
BsaI GGTCTC 1 cut(s) 1173
BsaJI CCNNGG 3 cut(s) 579, 777, 1281
BsaWI WCCGGW 2 cut(s) 943, 1213
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 943
Bse3DI GCAATG 2 cut(s) 393, 771
BseBI CCWGG 3 cut(s) 11, 79, 1282
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 579, 777, 1281
BseGI GGATG 3 cut(s) 513, 589, 1274
BseLI CCNNNNNNNGG 2 cut(s) 139, 943
BseMI GCAATG 2 cut(s) 393, 771
BseMII CTCAG 5 cut(s) 266, 350, 402, 979, 1575
BseRI GAGGAG 7 cut(s) 182, 682, 1145, 1148, 1151, 1154, 1601
BseSI GKGCMC 2 cut(s) 95, 727
Bsh1236I CGCG 1 cut(s) 473
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 95, 727
BsiHKCI CYCGRG 1 cut(s) 826
BsiSI CCGG 2 cut(s) 944, 1214
BslFI GGGAC 1 cut(s) 1327
BslI CCNNNNNNNGG 2 cut(s) 139, 943
BsmAI GTCTC 3 cut(s) 823, 1010, 1173
BsmFI GGGAC 1 cut(s) 1327
Bso31I GGTCTC 1 cut(s) 1173
BsoBI CYCGRG 1 cut(s) 826
Bsp119I TTCGAA 1 cut(s) 915
Bsp1286I GDGCHC 3 cut(s) 95, 727, 1288
Bsp143I GATC 4 cut(s) 6, 103, 961, 1372
BspACI CCGC 4 cut(s) 173, 365, 473, 889
BspCNI CTCAG 5 cut(s) 267, 349, 403, 978, 1576
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 473
BspHI TCATGA 2 cut(s) 1426, 1497
BspLI GGNNCC 2 cut(s) 1212, 1287
BspMAI CTGCAG 2 cut(s) 31, 849
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 3 cut(s) 312, 1042, 1270
BspT104I TTCGAA 1 cut(s) 915
BspTNI GGTCTC 1 cut(s) 1173
BsrDI GCAATG 2 cut(s) 393, 771
BssECI CCNNGG 3 cut(s) 579, 777, 1281
BssMI GATC 4 cut(s) 6, 103, 961, 1372
BssNI GRCGYC 2 cut(s) 1202, 1379
BssT1I CCWWGG 2 cut(s) 579, 777
Bst2UI CCWGG 3 cut(s) 11, 79, 1282
Bst4CI ACNGT 1 cut(s) 1538
Bst6I CTCTTC 5 cut(s) 200, 312, 659, 1042, 1270
BstACI GRCGYC 2 cut(s) 1202, 1379
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 915
BstC8I GCNNGC 3 cut(s) 408, 904, 908
BstDEI CTNAG 5 cut(s) 275, 336, 411, 965, 1584
BstF5I GGATG 3 cut(s) 513, 589, 1274
BstFNI CGCG 1 cut(s) 473
BstKTI GATC 4 cut(s) 9, 106, 964, 1375
BstMAI GTCTC 3 cut(s) 823, 1010, 1173
BstMBI GATC 4 cut(s) 6, 103, 961, 1372
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 379, 395, 1041, 1260
BstNI CCWGG 3 cut(s) 11, 79, 1282
BstNSI RCATGY 2 cut(s) 382, 1669
BstSCI CCNGG 3 cut(s) 9, 77, 1280
BstSFI CTRYAG 2 cut(s) 27, 845
BstSLI GKGCMC 2 cut(s) 95, 727
BstUI CGCG 1 cut(s) 473
Bsu15I ATCGAT 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 2 cut(s) 1017, 1409
BtrI CACGTC 2 cut(s) 194, 1095
BtsCI GGATG 3 cut(s) 513, 589, 1274
BtsI GCAGTG 2 cut(s) 93, 449
BtsIMutI CAGTG 2 cut(s) 93, 449
Cac8I GCNNGC 3 cut(s) 408, 904, 908
CciI TCATGA 2 cut(s) 1426, 1497
Cfr13I GGNCC 1 cut(s) 820
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 883, 1539
CviQI GTAC 2 cut(s) 883, 1539
DdeI CTNAG 5 cut(s) 275, 336, 411, 965, 1584
DpnI GATC 4 cut(s) 8, 105, 963, 1374
DpnII GATC 4 cut(s) 6, 103, 961, 1372
Eam1104I CTCTTC 5 cut(s) 200, 312, 659, 1042, 1270
EarI CTCTTC 5 cut(s) 200, 312, 659, 1042, 1270
Eco130I CCWWGG 2 cut(s) 579, 777
Eco24I GRGCYC 1 cut(s) 1288
Eco31I GGTCTC 1 cut(s) 1173
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 1 cut(s) 826
EcoO109I RGGNCCY 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 1493
EcoRII CCWGG 3 cut(s) 9, 77, 1280
EcoT14I CCWWGG 2 cut(s) 579, 777
EcoT22I ATGCAT 1 cut(s) 1449
EcoT38I GRGCYC 1 cut(s) 1288
ErhI CCWWGG 2 cut(s) 579, 777
FaqI GGGAC 1 cut(s) 1327
FokI GGATG 3 cut(s) 520, 596, 1261
FriOI GRGCYC 1 cut(s) 1288
FspBI CTAG 9 cut(s) 248, 353, 467, 570, 608, 689, 750, 993, 1299
GsuI CTGGAG 2 cut(s) 93, 1264
HapII CCGG 2 cut(s) 944, 1214
HgaI GACGC 1 cut(s) 479
Hin1I GRCGYC 2 cut(s) 1202, 1379
HpaII CCGG 2 cut(s) 944, 1214
HphI GGTGA 6 cut(s) 25, 466, 933, 1228, 1256, 1455
Hpy166II GTNNAC 6 cut(s) 93, 197, 725, 883, 1531, 1600
Hpy188I TCNGA 4 cut(s) 276, 1191, 1377, 1552
Hpy188III TCNNGA 8 cut(s) 110, 353, 826, 828, 1383, 1427, 1490, 1498
Hpy8I GTNNAC 6 cut(s) 93, 197, 725, 883, 1531, 1600
Hpy99I CGWCG 2 cut(s) 1204, 1207
HpyAV CCTTC 6 cut(s) 143, 412, 981, 1175, 1213, 1302
HpyCH4III ACNGT 1 cut(s) 1538
HpyCH4IV ACGT 6 cut(s) 193, 531, 1094, 1202, 1340, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 379, 395, 1041, 1260
HpyF3I CTNAG 5 cut(s) 275, 336, 411, 965, 1584
HpySE526I ACGT 6 cut(s) 193, 531, 1094, 1202, 1340, 1379
Hsp92I GRCGYC 2 cut(s) 1202, 1379
Kzo9I GATC 4 cut(s) 6, 103, 961, 1372
LguI GCTCTTC 3 cut(s) 312, 1042, 1270
LmnI GCTCC 2 cut(s) 370, 1291
LweI GCATC 2 cut(s) 1469, 1549
MaeI CTAG 9 cut(s) 248, 353, 467, 570, 608, 689, 750, 993, 1299
MaeII ACGT 6 cut(s) 193, 531, 1094, 1202, 1340, 1379
MaeIII GTNAC 4 cut(s) 209, 1471, 1505, 1657
MalI GATC 4 cut(s) 8, 105, 963, 1374
MboI GATC 4 cut(s) 6, 103, 961, 1372
MfeI CAATTG 3 cut(s) 86, 200, 1389
MhlI GDGCHC 3 cut(s) 95, 727, 1288
MlyI GAGTC 3 cut(s) 217, 328, 1654
MmeI TCCRAC 1 cut(s) 627
Mph1103I ATGCAT 1 cut(s) 1449
MseI TTAA 3 cut(s) 1062, 1089, 1232
MslI CAYNNNNRTG 2 cut(s) 216, 813
MspA1I CMGCKG 2 cut(s) 889, 1370
MspI CCGG 2 cut(s) 944, 1214
MspR9I CCNGG 3 cut(s) 11, 79, 1282
MunI CAATTG 3 cut(s) 86, 200, 1389
MvaI CCWGG 3 cut(s) 11, 79, 1282
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 379, 395, 1041, 1260
NdeII GATC 4 cut(s) 6, 103, 961, 1372
NlaIV GGNNCC 2 cut(s) 1212, 1287
NmuCI GTSAC 4 cut(s) 209, 1471, 1505, 1657
NsiI ATGCAT 1 cut(s) 1449
NspI RCATGY 2 cut(s) 382, 1669
NspV TTCGAA 1 cut(s) 915
OliI CACNNNNGTG 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 826
PagI TCATGA 2 cut(s) 1426, 1497
PciSI GCTCTTC 3 cut(s) 312, 1042, 1270
PfeI GAWTC 7 cut(s) 122, 271, 349, 735, 912, 1325, 1400
PleI GAGTC 3 cut(s) 216, 328, 1654
PpsI GAGTC 3 cut(s) 216, 328, 1654
PpuMI RGGWCCY 1 cut(s) 820
PsiI TTATAA 1 cut(s) 1672
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 3 cut(s) 9, 77, 1280
PspGI CCWGG 3 cut(s) 9, 77, 1280
PspN4I GGNNCC 2 cut(s) 1212, 1287
PspPI GGNCC 1 cut(s) 820
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 2 cut(s) 31, 849
PvuII CAGCTG 1 cut(s) 1370
RsaI GTAC 2 cut(s) 884, 1540
RsaNI GTAC 2 cut(s) 883, 1539
RseI CAYNNNNRTG 2 cut(s) 216, 813
SapI GCTCTTC 3 cut(s) 312, 1042, 1270
SaqAI TTAA 3 cut(s) 1062, 1089, 1232
Sau3AI GATC 4 cut(s) 6, 103, 961, 1372
Sau96I GGNCC 1 cut(s) 820
ScaI AGTACT 1 cut(s) 1540
SchI GAGTC 3 cut(s) 217, 328, 1654
ScrFI CCNGG 3 cut(s) 11, 79, 1282
SduI GDGCHC 3 cut(s) 95, 727, 1288
SfaNI GCATC 2 cut(s) 1469, 1549
SfcI CTRYAG 2 cut(s) 27, 845
Sfr274I CTCGAG 1 cut(s) 826
SfuI TTCGAA 1 cut(s) 915
SinI GGWCC 1 cut(s) 820
SlaI CTCGAG 1 cut(s) 826
SmiMI CAYNNNNRTG 2 cut(s) 216, 813
SmlI CTYRAG 2 cut(s) 683, 826
SmoI CTYRAG 2 cut(s) 683, 826
SpeI ACTAGT 1 cut(s) 607
SsiI CCGC 4 cut(s) 173, 365, 473, 889
SspI AATATT 3 cut(s) 515, 1087, 1516
SspMI CTAG 9 cut(s) 248, 353, 467, 570, 608, 689, 750, 993, 1299
StyD4I CCNGG 3 cut(s) 9, 77, 1280
StyI CCWWGG 2 cut(s) 579, 777
TaaI ACNGT 1 cut(s) 1538
TaiI ACGT 6 cut(s) 196, 534, 1097, 1205, 1343, 1382
TaqI TCGA 7 cut(s) 102, 827, 837, 915, 1199, 1205, 1455
TatI WGTACW 1 cut(s) 1538
TauI GCSGC 2 cut(s) 176, 476
TfiI GAWTC 7 cut(s) 122, 271, 349, 735, 912, 1325, 1400
Tru1I TTAA 3 cut(s) 1062, 1089, 1232
Tru9I TTAA 3 cut(s) 1062, 1089, 1232
TscAI CASTG 2 cut(s) 100, 449
TseFI GTSAC 4 cut(s) 209, 1471, 1505, 1657
Tsp45I GTSAC 4 cut(s) 209, 1471, 1505, 1657
TspGWI ACGGA 1 cut(s) 1254
TspRI CASTG 2 cut(s) 100, 449
VneI GTGCAC 2 cut(s) 91, 723
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 2 cut(s) 1493, 1545
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 2 cut(s) 382, 1669
XhoI CTCGAG 1 cut(s) 826
XspI CTAG 9 cut(s) 248, 353, 467, 570, 608, 689, 750, 993, 1299
ZraI GACGTC 2 cut(s) 1203, 1380
ZrmI AGTACT 1 cut(s) 1540
Zsp2I ATGCAT 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.