Rmu_sc0001557.1_g000015

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001557.1
OG0017304
Physical Location & Seq
Reverse (-)
53539 .. 55521
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001557.1_g000015.1.cds

Sequence Viewer

Length: 1644 bp
atgataattaaagtaagctttctggctgcagctacaattgcagcatatgcagtttcacacaaaaacaggtgcaattccatcaagaaccaatccaccatcatcaaccctccagagaatgatgactcaaacttccaacaacaacaaattgaaggagagatggaagatgagaagaagtctgaaattattagaagcagagaattgataagggtgaatgaaatagaagtgttacataatctagtgagggaggtgcagcagaggaagctgagtcttaagaggaaattgctagagctatgtgagctacgagaagagagatcttttatgtctcacttgcaaaggcatctagacgacaagtcgttggagattgaaatgctcaatgccaccattgcttcaatgcggactgagagaaaagatcttcatgaagatgccaagcaatgtgtcttggcaaggaagcaactggaaacggcgaggaaagtgatagcagaattgcagaagaagatgaattattgtaatgagagcaacatgaaggtgaagggaaggctgttgattgtggaagaacaagtttccaacctgcctagggatatagatgaaggaagctcagttagagatgctatagttgagaagaagctcaaaggtgtgagagatgttgagttacaaattttgaagatgaagaggagaaacaaagagcttgagcttggaaagagagaattagcagtcaaattggtttctgctcaagataaaattaccgccctttccaacataactgagagtgaaagcattgccaagattggagaggagatcagcaagttgaggcatgctaatgaagacttgtcgagacaagtcgagaggttacagaacaacagatttgatatggtccaacagcttgtgtaccagcgctggctccacacttgtttgagacttgaaattcaatcccacaatagcagcaagatttcaaatcccacctatgacagtgcgtcccctcagacatctacgactactctgagtgatgaaatgttcgagacaactaccgtggagttggatagcttatcttcaagtagccaaagaagtagcagtactgataagaaatctggtttcatgcatagtattaaaaggtggggtattagaaaaagcaaggatgcaaggtcctctgaaggtaactccttcagcaagaaaggcctagttcgcaggttttcgacatcaatggttccggagaaagcttcaatactgagaaacaaaggtgacaatgcagtcaaatcaagaggaaggagagtctcatttactgattcagttggatcaacagttcaatccgaatgtgtattcgatgatcataaggaaataggagctgatgagaggtctctctgcaactcaacgactaattcacctcaaaatggtaacattgaaatcaaaggggagacacacgatgagcctgcatcatcacctgaagtgactatttcttgtaacactccacacaccatcaaggaagaaagcagcattactcaagtaaacaagactgaaatagctatgtcttcctttggtaatcaggaaaacaaggttgacaccaatgctgtaggacttgttgctgctttgtttttcattctcttcgtcttagttgcctgttctacattttattcagctagacccctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

547

Amino Acids

61.9

Weight (kDa)

8.55

Isoelectric Point (pI)

63.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017304)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12771
malus_domestica MD06G1210200.v1.1
prunus_persica Prupe.5G216400_v2.0.a1
pyrus_communis pycom06g18790
rosa_chinensis RchiOBHm_Chr7g0184451
rosa_laevigata RLG00000004974
rosa_multiflora Rmu_sc0001557.1_g000015
rosa_roxburghii Rroxscaffold_3G00269600
rosa_samantha Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400
rosa_wichuraiana Rw7G005550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1244
Acc36I ACCTGC 2 cut(s) 576, 1173
AccIII TCCGGA 1 cut(s) 1204
AciI CCGC 2 cut(s) 394, 744
AclWI GGATC 1 cut(s) 1297
AcsI RAATTY 2 cut(s) 654, 921
AcuI CTGAAG 3 cut(s) 1144, 1167, 1458
AfaI GTAC 2 cut(s) 887, 1072
AfeI AGCGCT 1 cut(s) 893
AfiI CCNNNNNNNGG 2 cut(s) 574, 1385
AflII CTTAAG 1 cut(s) 269
AhdI GACNNNNNGTC 2 cut(s) 349, 970
AloI GAACNNNNNNTCC 2 cut(s) 1281, 1313
Alw26I GTCTC 7 cut(s) 327, 826, 907, 1010, 1273, 1356, 1403
AlwI GGATC 1 cut(s) 1297
Aor13HI TCCGGA 1 cut(s) 1204
Aor51HI AGCGCT 1 cut(s) 893
AoxI GGCC 1 cut(s) 1171
ApeKI GCWGC 7 cut(s) 26, 29, 41, 250, 939, 1485, 1577
ApoI RAATTY 2 cut(s) 654, 921
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 871, 1140
AsuHPI GGTGA 5 cut(s) 220, 538, 1247, 1368, 1425
AvaII GGWCC 2 cut(s) 871, 1140
AvrII CCTAGG 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 1054, 1086
BbsI GAAGAC 2 cut(s) 828, 1515
BbvI GCAGC 7 cut(s) 13, 41, 53, 262, 951, 1497, 1564
BccI CCATC 4 cut(s) 86, 104, 151, 1478
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 1406, 1440
BclI TGATCA 1 cut(s) 1321
BcoDI GTCTC 7 cut(s) 327, 826, 907, 1010, 1273, 1356, 1403
BfaI CTAG 6 cut(s) 236, 284, 341, 573, 1175, 1632
BfmI CTRYAG 3 cut(s) 27, 609, 1563
BfoI RGCGCY 1 cut(s) 895
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 2 cut(s) 576, 1173
BglII AGATCT 2 cut(s) 311, 409
BisI GCNGC 7 cut(s) 27, 30, 42, 251, 940, 1486, 1578
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 7 cut(s) 28, 31, 43, 252, 941, 1487, 1579
BmcAI AGTACT 1 cut(s) 1072
Bme18I GGWCC 2 cut(s) 871, 1140
BmeRI GACNNNNNGTC 2 cut(s) 349, 970
BmgT120I GGNCC 2 cut(s) 871, 1140
BmiI GGNNCC 2 cut(s) 899, 1203
BmsI GCATC 5 cut(s) 346, 412, 595, 1123, 1436
BpiI GAAGAC 2 cut(s) 828, 1515
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 3 cut(s) 707, 714, 1479
BsaI GGTCTC 1 cut(s) 1356
BsaJI CCNNGG 2 cut(s) 572, 1026
BsaWI WCCGGW 1 cut(s) 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 574, 1385
Bse1I ACTGG 1 cut(s) 459
Bse3DI GCAATG 3 cut(s) 381, 437, 774
BseAI TCCGGA 1 cut(s) 1204
BseDI CCNNGG 2 cut(s) 572, 1026
BseGI GGATG 1 cut(s) 1138
BseLI CCNNNNNNNGG 2 cut(s) 574, 1385
BseMI GCAATG 3 cut(s) 381, 437, 774
BseMII CTCAG 7 cut(s) 254, 390, 609, 753, 989, 992, 1214
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 685, 806
BseXI GCAGC 7 cut(s) 13, 41, 53, 262, 951, 1497, 1564
BsgI GTGCAG 1 cut(s) 269
BshFI GGCC 1 cut(s) 1173
BsiSI CCGG 1 cut(s) 1205
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 2 cut(s) 574, 1385
BsmAI GTCTC 7 cut(s) 327, 826, 907, 1010, 1273, 1356, 1403
BsmFI GGGAC 1 cut(s) 958
BsnI GGCC 1 cut(s) 1173
Bso31I GGTCTC 1 cut(s) 1356
Bsp13I TCCGGA 1 cut(s) 1204
Bsp143I GATC 5 cut(s) 311, 409, 795, 1289, 1321
BspACI CCGC 2 cut(s) 394, 744
BspANI GGCC 1 cut(s) 1173
BspCNI CTCAG 7 cut(s) 255, 391, 608, 754, 990, 991, 1215
BspEI TCCGGA 1 cut(s) 1204
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 899, 1203
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 2 cut(s) 576, 1173
BspPI GGATC 1 cut(s) 1297
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 1356
BsrDI GCAATG 3 cut(s) 381, 437, 774
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 572, 1026
BssMI GATC 5 cut(s) 311, 409, 795, 1289, 1321
BssT1I CCWWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 968, 1027, 1297
Bst6I CTCTTC 3 cut(s) 300, 662, 1601
BstAFI CTTAAG 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 813, 896, 1425
BstDEI CTNAG 8 cut(s) 263, 399, 595, 762, 978, 998, 1223, 1603
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 1 cut(s) 1138
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 5 cut(s) 314, 412, 798, 1292, 1324
BstMAI GTCTC 7 cut(s) 327, 826, 907, 1010, 1273, 1356, 1403
BstMBI GATC 5 cut(s) 311, 409, 795, 1289, 1321
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 383, 1170, 1179
BstNSI RCATGY 1 cut(s) 815
BstSFI CTRYAG 3 cut(s) 27, 609, 1563
BstV1I GCAGC 7 cut(s) 13, 41, 53, 262, 951, 1497, 1564
BstV2I GAAGAC 2 cut(s) 828, 1515
BstX2I RGATCY 2 cut(s) 311, 409
BstYI RGATCY 2 cut(s) 311, 409
BsuRI GGCC 1 cut(s) 1173
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 1 cut(s) 1138
BtsIMutI CAGTG 1 cut(s) 973
BveI ACCTGC 2 cut(s) 576, 1173
Cac8I GCNNGC 3 cut(s) 813, 896, 1425
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 871, 1140
CseI GACGC 1 cut(s) 960
Csp6I GTAC 2 cut(s) 886, 1071
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 4 cut(s) 416, 520, 812, 1093
CviQI GTAC 2 cut(s) 886, 1071
DdeI CTNAG 8 cut(s) 263, 399, 595, 762, 978, 998, 1223, 1603
DpnI GATC 5 cut(s) 313, 411, 797, 1291, 1323
DpnII GATC 5 cut(s) 311, 409, 795, 1289, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1244
DriI GACNNNNNGTC 2 cut(s) 349, 970
DseDI GACNNNNNNGTC 1 cut(s) 1244
Eam1104I CTCTTC 3 cut(s) 300, 662, 1601
Eam1105I GACNNNNNGTC 2 cut(s) 349, 970
EarI CTCTTC 3 cut(s) 300, 662, 1601
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 1173
Eco31I GGTCTC 1 cut(s) 1356
Eco47I GGWCC 2 cut(s) 871, 1140
Eco47III AGCGCT 1 cut(s) 893
Eco57I CTGAAG 3 cut(s) 1144, 1167, 1458
EcoO109I RGGNCCY 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 4 cut(s) 419, 523, 815, 1096
FaqI GGGAC 1 cut(s) 958
FatI CATG 4 cut(s) 415, 519, 811, 1092
FauNDI CATATG 1 cut(s) 46
FbaI TGATCA 1 cut(s) 1321
Fnu4HI GCNGC 7 cut(s) 27, 30, 42, 251, 940, 1486, 1578
FokI GGATG 1 cut(s) 1145
Fsp4HI GCNGC 7 cut(s) 27, 30, 42, 251, 940, 1486, 1578
FspBI CTAG 6 cut(s) 236, 284, 341, 573, 1175, 1632
GlaI GCGC 1 cut(s) 893
GluI GCNGC 7 cut(s) 27, 30, 42, 251, 940, 1486, 1578
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 895
HaeIII GGCC 1 cut(s) 1173
HapII CCGG 1 cut(s) 1205
HgaI GACGC 1 cut(s) 960
HhaI GCGC 1 cut(s) 894
Hin1II CATG 4 cut(s) 419, 523, 815, 1096
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 1552
HindII GTYRAC 1 cut(s) 1552
HindIII AAGCTT 2 cut(s) 16, 1212
HinfI GANTC 4 cut(s) 122, 265, 1266, 1280
HpaII CCGG 1 cut(s) 1205
HphI GGTGA 5 cut(s) 220, 538, 1247, 1368, 1425
Hpy166II GTNNAC 3 cut(s) 886, 1501, 1552
Hpy188I TCNGA 5 cut(s) 178, 981, 999, 1147, 1306
Hpy8I GTNNAC 3 cut(s) 886, 1501, 1552
HpyAV CCTTC 8 cut(s) 143, 517, 523, 528, 581, 1142, 1168, 1254
HpyCH4III ACNGT 3 cut(s) 968, 1027, 1297
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 383, 1170, 1179
HpyF3I CTNAG 8 cut(s) 263, 399, 595, 762, 978, 998, 1223, 1603
Hsp92II CATG 4 cut(s) 419, 523, 815, 1096
HspAI GCGC 1 cut(s) 892
Kpn2I TCCGGA 1 cut(s) 1204
Ksp22I TGATCA 1 cut(s) 1321
Kzo9I GATC 5 cut(s) 311, 409, 795, 1289, 1321
LmnI GCTCC 2 cut(s) 903, 1337
Lsp1109I GCAGC 7 cut(s) 13, 41, 53, 262, 951, 1497, 1564
LweI GCATC 5 cut(s) 346, 412, 595, 1123, 1436
MaeI CTAG 6 cut(s) 236, 284, 341, 573, 1175, 1632
MaeIII GTNAC 8 cut(s) 225, 648, 846, 1151, 1235, 1388, 1441, 1454
MalI GATC 5 cut(s) 313, 411, 797, 1291, 1323
MboI GATC 5 cut(s) 311, 409, 795, 1289, 1321
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 311, 409
MlyI GAGTC 3 cut(s) 116, 274, 1275
MmeI TCCRAC 7 cut(s) 157, 336, 588, 777, 898, 1014, 1267
Mph1103I ATGCAT 1 cut(s) 1098
MroI TCCGGA 1 cut(s) 1204
MseI TTAA 3 cut(s) 9, 270, 1104
MslI CAYNNNNRTG 3 cut(s) 420, 524, 816
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 1205
MunI CAATTG 1 cut(s) 36
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 259, 295, 383, 1170, 1179
NdeI CATATG 1 cut(s) 46
NdeII GATC 5 cut(s) 311, 409, 795, 1289, 1321
NlaIII CATG 4 cut(s) 419, 523, 815, 1096
NlaIV GGNNCC 2 cut(s) 899, 1203
NmuCI GTSAC 2 cut(s) 1235, 1441
NsiI ATGCAT 1 cut(s) 1098
NspI RCATGY 1 cut(s) 815
PaeI GCATGC 1 cut(s) 815
PagI TCATGA 1 cut(s) 415
PceI AGGCCT 1 cut(s) 1173
PfeI GAWTC 1 cut(s) 1280
PkrI GCNGC 7 cut(s) 28, 31, 43, 252, 941, 1487, 1579
PleI GAGTC 3 cut(s) 116, 273, 1274
PpsI GAGTC 3 cut(s) 116, 273, 1274
PpuMI RGGWCCY 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 1140
PspN4I GGNNCC 2 cut(s) 899, 1203
PspPI GGNCC 2 cut(s) 871, 1140
PspPPI RGGWCCY 1 cut(s) 1140
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 311, 409
RsaI GTAC 2 cut(s) 887, 1072
RsaNI GTAC 2 cut(s) 886, 1071
RseI CAYNNNNRTG 3 cut(s) 420, 524, 816
SaqAI TTAA 3 cut(s) 9, 270, 1104
SatI GCNGC 7 cut(s) 27, 30, 42, 251, 940, 1486, 1578
Sau3AI GATC 5 cut(s) 311, 409, 795, 1289, 1321
Sau96I GGNCC 2 cut(s) 871, 1140
ScaI AGTACT 1 cut(s) 1072
SchI GAGTC 3 cut(s) 116, 274, 1275
SfaNI GCATC 5 cut(s) 346, 412, 595, 1123, 1436
SfcI CTRYAG 3 cut(s) 27, 609, 1563
SinI GGWCC 2 cut(s) 871, 1140
SmiMI CAYNNNNRTG 3 cut(s) 420, 524, 816
SmlI CTYRAG 4 cut(s) 269, 686, 729, 1494
SmoI CTYRAG 4 cut(s) 269, 686, 729, 1494
SphI GCATGC 1 cut(s) 815
SseBI AGGCCT 1 cut(s) 1173
SsiI CCGC 2 cut(s) 394, 744
SspMI CTAG 6 cut(s) 236, 284, 341, 573, 1175, 1632
StuI AGGCCT 1 cut(s) 1173
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 968, 1027, 1297
TaqI TCGA 5 cut(s) 830, 840, 1014, 1190, 1317
TatI WGTACW 1 cut(s) 1070
TfiI GAWTC 1 cut(s) 1280
Tru1I TTAA 3 cut(s) 9, 270, 1104
Tru9I TTAA 3 cut(s) 9, 270, 1104
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 2 cut(s) 1235, 1441
TseI GCWGC 7 cut(s) 26, 29, 41, 250, 939, 1485, 1577
Tsp45I GTSAC 2 cut(s) 1235, 1441
TspRI CASTG 1 cut(s) 973
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 871, 1140
XapI RAATTY 2 cut(s) 654, 921
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 1 cut(s) 815
XmaJI CCTAGG 1 cut(s) 572
XspI CTAG 6 cut(s) 236, 284, 341, 573, 1175, 1632
ZrmI AGTACT 1 cut(s) 1072
Zsp2I ATGCAT 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.