Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g12771 |
| malus_domestica | MD06G1210200.v1.1 |
| prunus_persica | Prupe.5G216400_v2.0.a1 |
| pyrus_communis | pycom06g18790 |
| rosa_chinensis | RchiOBHm_Chr7g0184451 |
| rosa_laevigata | RLG00000004974 |
| rosa_multiflora | Rmu_sc0001557.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00269600 |
| rosa_samantha | Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400 |
| rosa_wichuraiana | Rw7G005550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1088 |
| Acc36I | ACCTGC | 2 cut(s) | 420, 1017 |
| AccII | CGCG | 1 cut(s) | 815 |
| AccIII | TCCGGA | 1 cut(s) | 1048 |
| AclWI | GGATC | 1 cut(s) | 1141 |
| AcsI | RAATTY | 2 cut(s) | 498, 765 |
| AcuI | CTGAAG | 3 cut(s) | 988, 1011, 1302 |
| AfaI | GTAC | 3 cut(s) | 731, 916, 1300 |
| AfeI | AGCGCT | 1 cut(s) | 737 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 418, 1229 |
| AflII | CTTAAG | 1 cut(s) | 113 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 814 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1125, 1157 |
| Alw26I | GTCTC | 5 cut(s) | 670, 751, 854, 1117, 1247 |
| AlwI | GGATC | 1 cut(s) | 1141 |
| Aor13HI | TCCGGA | 1 cut(s) | 1048 |
| Aor51HI | AGCGCT | 1 cut(s) | 737 |
| AoxI | GGCC | 1 cut(s) | 1015 |
| ApeKI | GCWGC | 5 cut(s) | 94, 742, 783, 1329, 1421 |
| ApoI | RAATTY | 2 cut(s) | 498, 765 |
| AspLEI | GCGC | 2 cut(s) | 738, 815 |
| AspS9I | GGNCC | 2 cut(s) | 715, 984 |
| AsuHPI | GGTGA | 5 cut(s) | 64, 382, 1091, 1212, 1269 |
| AvaII | GGWCC | 2 cut(s) | 715, 984 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 898, 930 |
| BauI | CACGAG | 1 cut(s) | 725 |
| BbsI | GAAGAC | 2 cut(s) | 672, 1359 |
| BbvCI | CCTCAGC | 1 cut(s) | 107 |
| BbvI | GCAGC | 5 cut(s) | 106, 729, 795, 1341, 1408 |
| BccI | CCATC | 2 cut(s) | 809, 1322 |
| BceAI | ACGGC | 1 cut(s) | 321 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1250, 1284 |
| BclI | TGATCA | 1 cut(s) | 1165 |
| BcoDI | GTCTC | 5 cut(s) | 670, 751, 854, 1117, 1247 |
| BfaI | CTAG | 4 cut(s) | 128, 185, 1019, 1476 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfoI | RGCGCY | 1 cut(s) | 739 |
| BfrI | CTTAAG | 1 cut(s) | 113 |
| BfuAI | ACCTGC | 2 cut(s) | 420, 1017 |
| BglII | AGATCT | 2 cut(s) | 155, 253 |
| BisI | GCNGC | 5 cut(s) | 95, 743, 784, 1330, 1422 |
| BlsI | GCNGC | 5 cut(s) | 96, 744, 785, 1331, 1423 |
| BmcAI | AGTACT | 1 cut(s) | 916 |
| Bme18I | GGWCC | 2 cut(s) | 715, 984 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 814 |
| BmgT120I | GGNCC | 2 cut(s) | 715, 984 |
| BmiI | GGNNCC | 1 cut(s) | 1047 |
| BmsI | GCATC | 4 cut(s) | 190, 439, 967, 1280 |
| BpiI | GAAGAC | 2 cut(s) | 672, 1359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 107 |
| BpuEI | CTTGAG | 3 cut(s) | 551, 558, 1323 |
| BsaJI | CCNNGG | 1 cut(s) | 870 |
| BsaWI | WCCGGW | 1 cut(s) | 1048 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 418, 1229 |
| Bse1I | ACTGG | 2 cut(s) | 303, 555 |
| Bse3DI | GCAATG | 3 cut(s) | 225, 281, 618 |
| BseAI | TCCGGA | 1 cut(s) | 1048 |
| BseDI | CCNNGG | 1 cut(s) | 870 |
| BseGI | GGATG | 2 cut(s) | 433, 982 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 418, 1229 |
| BseMI | GCAATG | 3 cut(s) | 225, 281, 618 |
| BseMII | CTCAG | 7 cut(s) | 98, 234, 453, 597, 833, 836, 1058 |
| BseNI | ACTGG | 2 cut(s) | 303, 555 |
| BseRI | GAGGAG | 2 cut(s) | 529, 650 |
| BseXI | GCAGC | 5 cut(s) | 106, 729, 795, 1341, 1408 |
| BsgI | GTGCAG | 2 cut(s) | 113, 728 |
| Bsh1236I | CGCG | 1 cut(s) | 815 |
| BshFI | GGCC | 1 cut(s) | 1017 |
| BsiSI | CCGG | 1 cut(s) | 1049 |
| BslFI | GGGAC | 1 cut(s) | 802 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 418, 1229 |
| BsmAI | GTCTC | 5 cut(s) | 670, 751, 854, 1117, 1247 |
| BsmFI | GGGAC | 1 cut(s) | 802 |
| BsnI | GGCC | 1 cut(s) | 1017 |
| Bsp13I | TCCGGA | 1 cut(s) | 1048 |
| Bsp1407I | TGTACA | 1 cut(s) | 1298 |
| Bsp143I | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| BspANI | GGCC | 1 cut(s) | 1017 |
| BspCNI | CTCAG | 7 cut(s) | 99, 235, 452, 598, 834, 835, 1059 |
| BspEI | TCCGGA | 1 cut(s) | 1048 |
| BspFNI | CGCG | 1 cut(s) | 815 |
| BspLI | GGNNCC | 1 cut(s) | 1047 |
| BspMI | ACCTGC | 2 cut(s) | 420, 1017 |
| BspPI | GGATC | 1 cut(s) | 1141 |
| BspTI | CTTAAG | 1 cut(s) | 113 |
| BsrDI | GCAATG | 3 cut(s) | 225, 281, 618 |
| BsrGI | TGTACA | 1 cut(s) | 1298 |
| BsrI | ACTGG | 2 cut(s) | 303, 555 |
| BssECI | CCNNGG | 1 cut(s) | 870 |
| BssMI | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| BssSI | CACGAG | 1 cut(s) | 725 |
| Bst2BI | CACGAG | 1 cut(s) | 725 |
| Bst4CI | ACNGT | 2 cut(s) | 871, 1141 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 506, 1102, 1445 |
| BstAFI | CTTAAG | 1 cut(s) | 113 |
| BstAUI | TGTACA | 1 cut(s) | 1298 |
| BstC8I | GCNNGC | 2 cut(s) | 740, 1269 |
| BstDEI | CTNAG | 9 cut(s) | 107, 143, 243, 439, 606, 822, 842, 1067, 1447 |
| BstDSI | CCRYGG | 1 cut(s) | 870 |
| BstF5I | GGATG | 2 cut(s) | 433, 982 |
| BstFNI | CGCG | 1 cut(s) | 815 |
| BstH2I | RGCGCY | 1 cut(s) | 739 |
| BstHHI | GCGC | 2 cut(s) | 738, 815 |
| BstKTI | GATC | 5 cut(s) | 158, 256, 642, 1136, 1168 |
| BstMAI | GTCTC | 5 cut(s) | 670, 751, 854, 1117, 1247 |
| BstMBI | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 103, 139, 227, 742, 1014, 1023 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstUI | CGCG | 1 cut(s) | 815 |
| BstV1I | GCAGC | 5 cut(s) | 106, 729, 795, 1341, 1408 |
| BstV2I | GAAGAC | 2 cut(s) | 672, 1359 |
| BstX2I | RGATCY | 2 cut(s) | 155, 253 |
| BstYI | RGATCY | 2 cut(s) | 155, 253 |
| BsuRI | GGCC | 1 cut(s) | 1017 |
| BtgI | CCRYGG | 1 cut(s) | 870 |
| BtsCI | GGATG | 2 cut(s) | 433, 982 |
| BveI | ACCTGC | 2 cut(s) | 420, 1017 |
| Cac8I | GCNNGC | 2 cut(s) | 740, 1269 |
| CfoI | GCGC | 2 cut(s) | 738, 815 |
| Cfr13I | GGNCC | 2 cut(s) | 715, 984 |
| CseI | GACGC | 1 cut(s) | 804 |
| Csp6I | GTAC | 3 cut(s) | 730, 915, 1299 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 852, 887 |
| CviAII | CATG | 3 cut(s) | 260, 364, 937 |
| CviQI | GTAC | 3 cut(s) | 730, 915, 1299 |
| DdeI | CTNAG | 9 cut(s) | 107, 143, 243, 439, 606, 822, 842, 1067, 1447 |
| DpnI | GATC | 5 cut(s) | 157, 255, 641, 1135, 1167 |
| DpnII | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1088 |
| DriI | GACNNNNNGTC | 1 cut(s) | 814 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1088 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 506, 1102, 1445 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 814 |
| EarI | CTCTTC | 4 cut(s) | 144, 506, 1102, 1445 |
| Eco147I | AGGCCT | 1 cut(s) | 1017 |
| Eco47I | GGWCC | 2 cut(s) | 715, 984 |
| Eco47III | AGCGCT | 1 cut(s) | 737 |
| Eco57I | CTGAAG | 3 cut(s) | 988, 1011, 1302 |
| EcoO109I | RGGNCCY | 1 cut(s) | 984 |
| FaeI | CATG | 3 cut(s) | 263, 367, 940 |
| FaqI | GGGAC | 1 cut(s) | 802 |
| FatI | CATG | 3 cut(s) | 259, 363, 936 |
| FbaI | TGATCA | 1 cut(s) | 1165 |
| Fnu4HI | GCNGC | 5 cut(s) | 95, 743, 784, 1330, 1422 |
| FokI | GGATG | 2 cut(s) | 440, 989 |
| Fsp4HI | GCNGC | 5 cut(s) | 95, 743, 784, 1330, 1422 |
| FspBI | CTAG | 4 cut(s) | 128, 185, 1019, 1476 |
| GlaI | GCGC | 2 cut(s) | 737, 814 |
| GluI | GCNGC | 5 cut(s) | 95, 743, 784, 1330, 1422 |
| HaeII | RGCGCY | 1 cut(s) | 739 |
| HaeIII | GGCC | 1 cut(s) | 1017 |
| HapII | CCGG | 1 cut(s) | 1049 |
| HgaI | GACGC | 1 cut(s) | 804 |
| HhaI | GCGC | 2 cut(s) | 738, 815 |
| Hin1II | CATG | 3 cut(s) | 263, 367, 940 |
| Hin6I | GCGC | 2 cut(s) | 736, 813 |
| HinP1I | GCGC | 2 cut(s) | 736, 813 |
| HincII | GTYRAC | 1 cut(s) | 1396 |
| HindII | GTYRAC | 1 cut(s) | 1396 |
| HindIII | AAGCTT | 1 cut(s) | 1056 |
| HinfI | GANTC | 2 cut(s) | 1110, 1124 |
| HpaII | CCGG | 1 cut(s) | 1049 |
| HphI | GGTGA | 5 cut(s) | 64, 382, 1091, 1212, 1269 |
| Hpy166II | GTNNAC | 3 cut(s) | 730, 1345, 1396 |
| Hpy188I | TCNGA | 6 cut(s) | 22, 825, 843, 991, 1150, 1198 |
| Hpy188III | TCNNGA | 8 cut(s) | 185, 575, 675, 685, 859, 1049, 1098, 1382 |
| Hpy8I | GTNNAC | 3 cut(s) | 730, 1345, 1396 |
| HpyAV | CCTTC | 6 cut(s) | 361, 367, 372, 425, 986, 1012 |
| HpyCH4III | ACNGT | 2 cut(s) | 871, 1141 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 103, 139, 227, 742, 1014, 1023 |
| HpyF3I | CTNAG | 9 cut(s) | 107, 143, 243, 439, 606, 822, 842, 1067, 1447 |
| Hsp92II | CATG | 3 cut(s) | 263, 367, 940 |
| HspAI | GCGC | 2 cut(s) | 736, 813 |
| Kpn2I | TCCGGA | 1 cut(s) | 1048 |
| Ksp22I | TGATCA | 1 cut(s) | 1165 |
| Kzo9I | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| LmnI | GCTCC | 1 cut(s) | 1181 |
| Lsp1109I | GCAGC | 5 cut(s) | 106, 729, 795, 1341, 1408 |
| LweI | GCATC | 4 cut(s) | 190, 439, 967, 1280 |
| MaeI | CTAG | 4 cut(s) | 128, 185, 1019, 1476 |
| MaeIII | GTNAC | 7 cut(s) | 69, 492, 690, 995, 1079, 1232, 1285 |
| MalI | GATC | 5 cut(s) | 157, 255, 641, 1135, 1167 |
| MboI | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| MflI | RGATCY | 2 cut(s) | 155, 253 |
| MlyI | GAGTC | 1 cut(s) | 1119 |
| MmeI | TCCRAC | 6 cut(s) | 180, 432, 621, 742, 858, 1111 |
| MroI | TCCGGA | 1 cut(s) | 1048 |
| MseI | TTAA | 4 cut(s) | 30, 44, 114, 948 |
| MslI | CAYNNNNRTG | 3 cut(s) | 264, 368, 660 |
| MspCI | CTTAAG | 1 cut(s) | 113 |
| MspI | CCGG | 1 cut(s) | 1049 |
| MvnI | CGCG | 1 cut(s) | 815 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 103, 139, 227, 742, 1014, 1023 |
| NdeII | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| NlaIII | CATG | 3 cut(s) | 263, 367, 940 |
| NlaIV | GGNNCC | 1 cut(s) | 1047 |
| NmuCI | GTSAC | 2 cut(s) | 1079, 1285 |
| PceI | AGGCCT | 1 cut(s) | 1017 |
| PfeI | GAWTC | 1 cut(s) | 1124 |
| PkrI | GCNGC | 5 cut(s) | 96, 744, 785, 1331, 1423 |
| PleI | GAGTC | 1 cut(s) | 1118 |
| PpsI | GAGTC | 1 cut(s) | 1118 |
| PpuMI | RGGWCCY | 1 cut(s) | 984 |
| Psp5II | RGGWCCY | 1 cut(s) | 984 |
| PspN4I | GGNNCC | 1 cut(s) | 1047 |
| PspPI | GGNCC | 2 cut(s) | 715, 984 |
| PspPPI | RGGWCCY | 1 cut(s) | 984 |
| PsuI | RGATCY | 2 cut(s) | 155, 253 |
| RsaI | GTAC | 3 cut(s) | 731, 916, 1300 |
| RsaNI | GTAC | 3 cut(s) | 730, 915, 1299 |
| RseI | CAYNNNNRTG | 3 cut(s) | 264, 368, 660 |
| SaqAI | TTAA | 4 cut(s) | 30, 44, 114, 948 |
| SatI | GCNGC | 5 cut(s) | 95, 743, 784, 1330, 1422 |
| Sau3AI | GATC | 5 cut(s) | 155, 253, 639, 1133, 1165 |
| Sau96I | GGNCC | 2 cut(s) | 715, 984 |
| ScaI | AGTACT | 1 cut(s) | 916 |
| SchI | GAGTC | 1 cut(s) | 1119 |
| SfaNI | GCATC | 4 cut(s) | 190, 439, 967, 1280 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SinI | GGWCC | 2 cut(s) | 715, 984 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 264, 368, 660 |
| SmlI | CTYRAG | 4 cut(s) | 113, 530, 573, 1338 |
| SmoI | CTYRAG | 4 cut(s) | 113, 530, 573, 1338 |
| SseBI | AGGCCT | 1 cut(s) | 1017 |
| SspMI | CTAG | 4 cut(s) | 128, 185, 1019, 1476 |
| StuI | AGGCCT | 1 cut(s) | 1017 |
| TaaI | ACNGT | 2 cut(s) | 871, 1141 |
| TaqI | TCGA | 5 cut(s) | 674, 684, 858, 1034, 1161 |
| TatI | WGTACW | 2 cut(s) | 914, 1298 |
| TfiI | GAWTC | 1 cut(s) | 1124 |
| Tru1I | TTAA | 4 cut(s) | 30, 44, 114, 948 |
| Tru9I | TTAA | 4 cut(s) | 30, 44, 114, 948 |
| TseFI | GTSAC | 2 cut(s) | 1079, 1285 |
| TseI | GCWGC | 5 cut(s) | 94, 742, 783, 1329, 1421 |
| Tsp45I | GTSAC | 2 cut(s) | 1079, 1285 |
| Vha464I | CTTAAG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 2 cut(s) | 715, 984 |
| XapI | RAATTY | 2 cut(s) | 498, 765 |
| XbaI | TCTAGA | 1 cut(s) | 184 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 415 |
| XspI | CTAG | 4 cut(s) | 128, 185, 1019, 1476 |
| ZrmI | AGTACT | 1 cut(s) | 916 |