Rh7DG067400

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017304
Physical Location & Seq
Forward (+)
5154773 .. 5157086
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG067400.1

Sequence Viewer

Length: 1494 bp
ATGGAAGATGAGAAGAAGTCTGAAATTATTAGAAGCAAAGAATTGATAAGGGTGAATGAAATAGAAGTGTTACATAATCTAGTGAGGGAGGTGCAGCAGAGGAAGCTGAGTCTTAAGAGGAAATTGCTAGAGCTATGTGAGCTACGAGAAGAGAGATCTTTTATGTCTCACTTGCAAAGGCATCTAGACGACAAGTCGTTGGAGATTGAAATGCTCAATGCCACCATTGCTTCAATGCGGACTGAGAGAAAAGATCTTCATGAAGATGCCAAGCAATGTGTCTTGGCAAGGAAGCAACTGGAAACGGCGAGGAAAGTGATAGCAGAATTGCAGAAGAAGATGAATTATTGTAATGAGAGCAACATGAAGGTGAAGGGAAGGCTGTTGATTGTGGAAGAACAAGTTTCCAACCTGCCTAGGGATATAGATGAAGGAAGCTCAGTTAGAGATGCTATAGTTGAGAAGAAGCTCAAAGGTGTGAGAGATGTTGAGTTACAAATTTTGAAGATGAAGAGGAGAAACAAAGAGCTTGAGCTTGGAAAGAGAGAATTAGCAGTCAAATTGGTTTCTGCTCAAGATAAAATTACTGCCCTTTCCAACATAACTGAGAGTGAAAGCATTGCCAAGATTGGAGAGGAGATCAGCAAGTTGAGGCATACTAATGAAGACTTGTCGAGACAAGTCGAGAGGTTACAGAACAACAGATTAGATATGGTCCAACAGCTTGTGTACCAGCGCTGGCTCCACACTTGTTTGAGACTTGAAATTCAATCCCACAATAGCAGCAAGATTTCAAATCCCACCTATGACAGTGCGTCCCCTCAGACATCTACGACTACTCTGAGTGATGAAATGTTCGAGACAACTACCGTGGAGTTGGATAGCTCATCTTCAAGTAGCCACAGAAGTAGCAGTACTGATAAGAAATCTGGTTTCATGCATGGTATTAAAAGGTGGGGTATTAGAAAAAGCAAGGATGCAAGGTCCTCTGAAGGTAACTCCTTCAGCAAGAAAGGCCTAGTTCGCAGGTTTTCGACATCAATGGTTCCGGAGAAAGCTTCAATACTGAGAAACAAAGGTGACAATGCAGTCAAATCAAGAGGAAGGAGAGTCTCATTTACTGATTCAGTTGGATCAACAGTTCAATCCGAATGTGTATTCGATGATCATAAGGAAATAGAAGCTGATGAGAGGTCTGACTGCAACGTTAACTCAACGACTAATTCACCTCAAAATGGTAACATTGAAATCAAAGGGGAGACACACGATGAGCCTGCATCATCACCTGAAGTGACTATTTCTTGTACAACTCCACACATCATCAAGGAAGAAAGCAGCATTACTCAAGTAAACAAGACTGAAATAGCTATGTCTTCCTTTGGTAATCAGGAAAACAAGGTTGACACCAATGCTGTAGGACTTGTTGCTGCTTTGTTTTTCATTCTCTTCGTCTTAGTTGCCTGTTCTACATTTTATTCAGCTAGACCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

497

Amino Acids

56.37

Weight (kDa)

8.46

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017304)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12771
malus_domestica MD06G1210200.v1.1
prunus_persica Prupe.5G216400_v2.0.a1
pyrus_communis pycom06g18790
rosa_chinensis RchiOBHm_Chr7g0184451
rosa_laevigata RLG00000004974
rosa_multiflora Rmu_sc0001557.1_g000015
rosa_roxburghii Rroxscaffold_3G00269600
rosa_samantha Rh7AG079800 Rh7BG067400 Rh7CG067700 Rh7DG067400
rosa_wichuraiana Rw7G005550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1088
Acc36I ACCTGC 2 cut(s) 420, 1017
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 1 cut(s) 238
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 1 cut(s) 1141
AcsI RAATTY 2 cut(s) 498, 765
AcuI CTGAAG 3 cut(s) 988, 1011, 1308
AfaI GTAC 3 cut(s) 731, 916, 1306
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 2 cut(s) 418, 1235
AflII CTTAAG 1 cut(s) 113
AhdI GACNNNNNGTC 2 cut(s) 193, 814
AloI GAACNNNNNNTCC 2 cut(s) 1125, 1157
Alw26I GTCTC 6 cut(s) 171, 670, 751, 854, 1117, 1253
AlwI GGATC 1 cut(s) 1141
Aor13HI TCCGGA 1 cut(s) 1048
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 1 cut(s) 1015
ApeKI GCWGC 4 cut(s) 94, 783, 1335, 1427
ApoI RAATTY 2 cut(s) 498, 765
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 2 cut(s) 715, 984
AsuHPI GGTGA 5 cut(s) 64, 382, 1091, 1218, 1275
AvaII GGWCC 2 cut(s) 715, 984
AvrII CCTAGG 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 898, 930
BbsI GAAGAC 2 cut(s) 672, 1365
BbvI GCAGC 4 cut(s) 106, 795, 1347, 1414
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 6 cut(s) 171, 670, 751, 854, 1117, 1253
BfaI CTAG 6 cut(s) 80, 128, 185, 417, 1019, 1482
BfmI CTRYAG 2 cut(s) 453, 1413
BfoI RGCGCY 1 cut(s) 739
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 420, 1017
BglII AGATCT 2 cut(s) 155, 253
BisI GCNGC 4 cut(s) 95, 784, 1336, 1428
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 4 cut(s) 96, 785, 1337, 1429
BmcAI AGTACT 1 cut(s) 916
Bme18I GGWCC 2 cut(s) 715, 984
BmeRI GACNNNNNGTC 2 cut(s) 193, 814
BmgT120I GGNCC 2 cut(s) 715, 984
BmiI GGNNCC 2 cut(s) 743, 1047
BmsI GCATC 5 cut(s) 190, 256, 439, 967, 1286
BpiI GAAGAC 2 cut(s) 672, 1365
BpuEI CTTGAG 3 cut(s) 551, 558, 1329
BsaJI CCNNGG 2 cut(s) 416, 870
BsaWI WCCGGW 1 cut(s) 1048
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 1235
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 3 cut(s) 225, 281, 618
BseAI TCCGGA 1 cut(s) 1048
BseDI CCNNGG 2 cut(s) 416, 870
BseGI GGATG 1 cut(s) 982
BseLI CCNNNNNNNGG 2 cut(s) 418, 1235
BseMI GCAATG 3 cut(s) 225, 281, 618
BseMII CTCAG 7 cut(s) 98, 234, 453, 597, 833, 836, 1058
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 2 cut(s) 529, 650
BseXI GCAGC 4 cut(s) 106, 795, 1347, 1414
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 1017
BsiSI CCGG 1 cut(s) 1049
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 2 cut(s) 418, 1235
BsmAI GTCTC 6 cut(s) 171, 670, 751, 854, 1117, 1253
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 1 cut(s) 1017
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1407I TGTACA 1 cut(s) 1304
Bsp143I GATC 5 cut(s) 155, 253, 639, 1133, 1165
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 1017
BspCNI CTCAG 7 cut(s) 99, 235, 452, 598, 834, 835, 1059
BspEI TCCGGA 1 cut(s) 1048
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 743, 1047
BspMI ACCTGC 2 cut(s) 420, 1017
BspPI GGATC 1 cut(s) 1141
BspTI CTTAAG 1 cut(s) 113
BsrDI GCAATG 3 cut(s) 225, 281, 618
BsrGI TGTACA 1 cut(s) 1304
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 416, 870
BssMI GATC 5 cut(s) 155, 253, 639, 1133, 1165
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 3 cut(s) 812, 871, 1141
Bst6I CTCTTC 3 cut(s) 144, 506, 1451
BstAFI CTTAAG 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 1304
BstC8I GCNNGC 2 cut(s) 740, 1275
BstDEI CTNAG 8 cut(s) 107, 243, 439, 606, 822, 842, 1067, 1453
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 982
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 5 cut(s) 158, 256, 642, 1136, 1168
BstMAI GTCTC 6 cut(s) 171, 670, 751, 854, 1117, 1253
BstMBI GATC 5 cut(s) 155, 253, 639, 1133, 1165
BstMWI GCNNNNNNNGC 5 cut(s) 103, 139, 227, 1014, 1023
BstSFI CTRYAG 2 cut(s) 453, 1413
BstV1I GCAGC 4 cut(s) 106, 795, 1347, 1414
BstV2I GAAGAC 2 cut(s) 672, 1365
BstX2I RGATCY 2 cut(s) 155, 253
BstYI RGATCY 2 cut(s) 155, 253
BsuRI GGCC 1 cut(s) 1017
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 1 cut(s) 982
BtsIMutI CAGTG 1 cut(s) 817
BveI ACCTGC 2 cut(s) 420, 1017
Cac8I GCNNGC 2 cut(s) 740, 1275
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 2 cut(s) 715, 984
CseI GACGC 1 cut(s) 804
Csp6I GTAC 3 cut(s) 730, 915, 1305
CspCI CAANNNNNGTGG 2 cut(s) 852, 887
CviAII CATG 4 cut(s) 260, 364, 937, 941
CviQI GTAC 3 cut(s) 730, 915, 1305
DdeI CTNAG 8 cut(s) 107, 243, 439, 606, 822, 842, 1067, 1453
DpnI GATC 5 cut(s) 157, 255, 641, 1135, 1167
DpnII GATC 5 cut(s) 155, 253, 639, 1133, 1165
DrdI GACNNNNNNGTC 1 cut(s) 1088
DriI GACNNNNNGTC 2 cut(s) 193, 814
DseDI GACNNNNNNGTC 1 cut(s) 1088
Eam1104I CTCTTC 3 cut(s) 144, 506, 1451
Eam1105I GACNNNNNGTC 2 cut(s) 193, 814
EarI CTCTTC 3 cut(s) 144, 506, 1451
Eco130I CCWWGG 1 cut(s) 416
Eco147I AGGCCT 1 cut(s) 1017
Eco47I GGWCC 2 cut(s) 715, 984
Eco47III AGCGCT 1 cut(s) 737
Eco57I CTGAAG 3 cut(s) 988, 1011, 1308
EcoO109I RGGNCCY 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 4 cut(s) 263, 367, 940, 944
FaqI GGGAC 1 cut(s) 802
FatI CATG 4 cut(s) 259, 363, 936, 940
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 4 cut(s) 95, 784, 1336, 1428
FokI GGATG 1 cut(s) 989
Fsp4HI GCNGC 4 cut(s) 95, 784, 1336, 1428
FspBI CTAG 6 cut(s) 80, 128, 185, 417, 1019, 1482
GlaI GCGC 1 cut(s) 737
GluI GCNGC 4 cut(s) 95, 784, 1336, 1428
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 1 cut(s) 1017
HapII CCGG 1 cut(s) 1049
HgaI GACGC 1 cut(s) 804
HhaI GCGC 1 cut(s) 738
Hin1II CATG 4 cut(s) 263, 367, 940, 944
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 2 cut(s) 1210, 1402
HindII GTYRAC 2 cut(s) 1210, 1402
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 3 cut(s) 109, 1110, 1124
HpaI GTTAAC 1 cut(s) 1210
HpaII CCGG 1 cut(s) 1049
HphI GGTGA 5 cut(s) 64, 382, 1091, 1218, 1275
Hpy166II GTNNAC 4 cut(s) 730, 1210, 1351, 1402
Hpy188I TCNGA 6 cut(s) 22, 825, 843, 991, 1150, 1198
Hpy188III TCNNGA 9 cut(s) 185, 260, 575, 675, 685, 859, 1049, 1098, 1388
Hpy8I GTNNAC 4 cut(s) 730, 1210, 1351, 1402
HpyAV CCTTC 7 cut(s) 361, 367, 372, 425, 986, 1012, 1098
HpyCH4III ACNGT 3 cut(s) 812, 871, 1141
HpyCH4IV ACGT 1 cut(s) 1206
HpyCH4V TGCA 8 cut(s) 94, 175, 331, 940, 980, 1088, 1203, 1277
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 139, 227, 1014, 1023
HpyF3I CTNAG 8 cut(s) 107, 243, 439, 606, 822, 842, 1067, 1453
HpySE526I ACGT 1 cut(s) 1206
Hsp92II CATG 4 cut(s) 263, 367, 940, 944
HspAI GCGC 1 cut(s) 736
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 1165
KspAI GTTAAC 1 cut(s) 1210
Kzo9I GATC 5 cut(s) 155, 253, 639, 1133, 1165
LmnI GCTCC 1 cut(s) 747
Lsp1109I GCAGC 4 cut(s) 106, 795, 1347, 1414
LweI GCATC 5 cut(s) 190, 256, 439, 967, 1286
MaeI CTAG 6 cut(s) 80, 128, 185, 417, 1019, 1482
MaeII ACGT 1 cut(s) 1206
MaeIII GTNAC 7 cut(s) 69, 492, 690, 995, 1079, 1238, 1291
MalI GATC 5 cut(s) 157, 255, 641, 1135, 1167
MboI GATC 5 cut(s) 155, 253, 639, 1133, 1165
MflI RGATCY 2 cut(s) 155, 253
MlyI GAGTC 2 cut(s) 118, 1119
MmeI TCCRAC 6 cut(s) 180, 432, 621, 742, 858, 1111
Mph1103I ATGCAT 1 cut(s) 942
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 3 cut(s) 114, 948, 1209
MslI CAYNNNNRTG 3 cut(s) 264, 368, 660
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 1 cut(s) 1049
MwoI GCNNNNNNNGC 5 cut(s) 103, 139, 227, 1014, 1023
NdeII GATC 5 cut(s) 155, 253, 639, 1133, 1165
NlaIII CATG 4 cut(s) 263, 367, 940, 944
NlaIV GGNNCC 2 cut(s) 743, 1047
NmuCI GTSAC 2 cut(s) 1079, 1291
NsiI ATGCAT 1 cut(s) 942
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 1017
PfeI GAWTC 1 cut(s) 1124
PkrI GCNGC 4 cut(s) 96, 785, 1337, 1429
PleI GAGTC 2 cut(s) 117, 1118
PpsI GAGTC 2 cut(s) 117, 1118
PpuMI RGGWCCY 1 cut(s) 984
Psp1406I AACGTT 1 cut(s) 1206
Psp5II RGGWCCY 1 cut(s) 984
PspN4I GGNNCC 2 cut(s) 743, 1047
PspPI GGNCC 2 cut(s) 715, 984
PspPPI RGGWCCY 1 cut(s) 984
PsuI RGATCY 2 cut(s) 155, 253
RsaI GTAC 3 cut(s) 731, 916, 1306
RsaNI GTAC 3 cut(s) 730, 915, 1305
RseI CAYNNNNRTG 3 cut(s) 264, 368, 660
SaqAI TTAA 3 cut(s) 114, 948, 1209
SatI GCNGC 4 cut(s) 95, 784, 1336, 1428
Sau3AI GATC 5 cut(s) 155, 253, 639, 1133, 1165
Sau96I GGNCC 2 cut(s) 715, 984
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 2 cut(s) 118, 1119
SfaNI GCATC 5 cut(s) 190, 256, 439, 967, 1286
SfcI CTRYAG 2 cut(s) 453, 1413
SinI GGWCC 2 cut(s) 715, 984
SmiMI CAYNNNNRTG 3 cut(s) 264, 368, 660
SmlI CTYRAG 4 cut(s) 113, 530, 573, 1344
SmoI CTYRAG 4 cut(s) 113, 530, 573, 1344
SseBI AGGCCT 1 cut(s) 1017
SsiI CCGC 1 cut(s) 238
SspMI CTAG 6 cut(s) 80, 128, 185, 417, 1019, 1482
StuI AGGCCT 1 cut(s) 1017
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 3 cut(s) 812, 871, 1141
TaiI ACGT 1 cut(s) 1209
TaqI TCGA 5 cut(s) 674, 684, 858, 1034, 1161
TatI WGTACW 2 cut(s) 914, 1304
TfiI GAWTC 1 cut(s) 1124
Tru1I TTAA 3 cut(s) 114, 948, 1209
Tru9I TTAA 3 cut(s) 114, 948, 1209
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 2 cut(s) 1079, 1291
TseI GCWGC 4 cut(s) 94, 783, 1335, 1427
Tsp45I GTSAC 2 cut(s) 1079, 1291
TspRI CASTG 1 cut(s) 817
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 715, 984
XapI RAATTY 2 cut(s) 498, 765
XbaI TCTAGA 1 cut(s) 184
XmaJI CCTAGG 1 cut(s) 416
XspI CTAG 6 cut(s) 80, 128, 185, 417, 1019, 1482
ZrmI AGTACT 1 cut(s) 916
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.