Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Reverse (-)

7316362 .. 7317012

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGACAGCCTAGAGAGCTCAACACCAAACCAAAAAGAAACTTTCCATGAAAACAAAGAGAGTAGTTGTCTTAGTACTAGCGTGATCAAGGTTCCGAAAAAGGCAAAGATTAATGGAAGGAGATTCCTAGGCGTGAGACAAAGGCCATCAGGAAGGTGGGTGGCTGAGATCAAGGACTCATCACAGAATCTGAGACTATGGCTAGGAACTTTTGATAGAGCAGAAGAGGCTGCATTGGCTTATGATAAGGCTGCAAGGGTTTTGAGAGGAAGGAATGCAAAGACCAACTTCCCATCATCTCATCAGCAGCATGGAATGGACTTCATGAATATACATGAAGAAAACTGCAACATATTGAGGAAGAATCCGCGGCTTTATCAGTTGCTTCAGCACGCGATCATGAAGAACCATGCAGCAATTTCAAGGTCTTCATCATCATCGAGGATCATAGGATCAAAGGAGGCTCAATCTGATTCAAACGATAAGTACTTTGATACACTTGTTGAAGAAACTATAGTGTGCTCTTCATCATCAACAAGTACTGCTTGTGATGTTGGAGATTATGATGATTACCATTGCGCACTTCCATTTGGTACTTCTAAGGTTTATTCTTCTGTTGTCGTTGCTCCTTCTTTCAGTGCTACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

217

Amino Acids

24.06

Weight (kDa)

8.78

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 90	6.9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	580
AccII	CGCG	2 cut(s)	370, 395
AciI	CCGC	2 cut(s)	368, 370
AclWI	GGATC	2 cut(s)	452, 460
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	4 cut(s)	76, 488, 541, 595
AgsI	TTSAA	3 cut(s)	423, 477, 506
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	2 cut(s)	20, 524
Alw26I	GTCTC	2 cut(s)	130, 187
AlwI	GGATC	2 cut(s)	452, 460
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	4 cut(s)	230, 251, 307, 413
AseI	ATTAAT	1 cut(s)	111
AspA2I	CCTAGG	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	581
AvrII	CCTAGG	1 cut(s)	127
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	20, 524
BbvI	GCAGC	4 cut(s)	217, 238, 319, 425
BccI	CCATC	2 cut(s)	154, 301
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	130, 187
BfaI	CTAG	4 cut(s)	11, 78, 128, 203
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	5 cut(s)	231, 252, 308, 371, 414
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	5 cut(s)	232, 253, 309, 372, 415
BmcAI	AGTACT	3 cut(s)	76, 488, 541
BmiI	GGNNCC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	127, 368
Bse3DI	GCAATG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	127, 368
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	156, 182
BseXI	GCAGC	4 cut(s)	217, 238, 319, 425
Bsh1236I	CGCG	2 cut(s)	370, 395
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	20, 524
BsmAI	GTCTC	2 cut(s)	130, 187
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	20, 524
Bsp143I	GATC	5 cut(s)	84, 168, 396, 444, 452
BspACI	CCGC	2 cut(s)	368, 370
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	157, 183
BspFNI	CGCG	2 cut(s)	370, 395
BspHI	TCATGA	3 cut(s)	324, 399, 647
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	452, 460
BspQI	GCTCTTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	127, 368
BssMI	GATC	5 cut(s)	84, 168, 396, 444, 452
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	219, 529
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	71, 165, 191, 600
BstDSI	CCRYGG	1 cut(s)	368
BstFNI	CGCG	2 cut(s)	370, 395
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	5 cut(s)	87, 171, 399, 447, 455
BstMAI	GTCTC	2 cut(s)	130, 187
BstMBI	GATC	5 cut(s)	84, 168, 396, 444, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 227, 236
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	2 cut(s)	370, 395
BstV1I	GCAGC	4 cut(s)	217, 238, 319, 425
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	190
CciI	TCATGA	3 cut(s)	324, 399, 647
CfoI	GCGC	1 cut(s)	581
Cfr42I	CCGCGG	1 cut(s)	371
Csp6I	GTAC	4 cut(s)	75, 487, 540, 594
CviAII	CATG	7 cut(s)	47, 311, 325, 335, 400, 410, 648
CviQI	GTAC	4 cut(s)	75, 487, 540, 594
DdeI	CTNAG	4 cut(s)	71, 165, 191, 600
DpnI	GATC	5 cut(s)	86, 170, 398, 446, 454
DpnII	GATC	5 cut(s)	84, 168, 396, 444, 452
Eam1104I	CTCTTC	2 cut(s)	219, 529
EarI	CTCTTC	2 cut(s)	219, 529
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	7 cut(s)	50, 314, 328, 338, 403, 413, 651
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 529, 561
FatI	CATG	7 cut(s)	46, 310, 324, 334, 399, 409, 647
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	231, 252, 308, 371, 414
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	231, 252, 308, 371, 414
FspBI	CTAG	4 cut(s)	11, 78, 128, 203
FspI	TGCGCA	1 cut(s)	580
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	5 cut(s)	231, 252, 308, 371, 414
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	7 cut(s)	50, 314, 328, 338, 403, 413, 651
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	5 cut(s)	123, 176, 187, 364, 473
Hpy188I	TCNGA	3 cut(s)	96, 192, 472
Hpy188III	TCNNGA	4 cut(s)	150, 325, 400, 648
HpyAV	CCTTC	4 cut(s)	111, 147, 264, 639
HpyCH4V	TGCA	5 cut(s)	233, 254, 278, 348, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 227, 236
HpyF3I	CTNAG	4 cut(s)	71, 165, 191, 600
Hsp92II	CATG	7 cut(s)	50, 314, 328, 338, 403, 413, 651
HspAI	GCGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	371
Kzo9I	GATC	5 cut(s)	84, 168, 396, 444, 452
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	631
LpnPI	CCDG	1 cut(s)	135
Lsp1109I	GCAGC	4 cut(s)	217, 238, 319, 425
MaeI	CTAG	4 cut(s)	11, 78, 128, 203
MalI	GATC	5 cut(s)	86, 170, 398, 446, 454
MboI	GATC	5 cut(s)	84, 168, 396, 444, 452
MboII	GAAGA	8 cut(s)	236, 350, 373, 415, 420, 516, 518, 603
MhlI	GDGCHC	2 cut(s)	20, 524
MluCI	AATT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	5 cut(s)	220, 260, 351, 435, 454
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	280
MvnI	CGCG	2 cut(s)	370, 395
MwoI	GCNNNNNNNGC	3 cut(s)	15, 227, 236
NdeII	GATC	5 cut(s)	84, 168, 396, 444, 452
NlaIII	CATG	7 cut(s)	50, 314, 328, 338, 403, 413, 651
NlaIV	GGNNCC	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	580
PagI	TCATGA	3 cut(s)	324, 399, 647
PciSI	GCTCTTC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	4 cut(s)	123, 187, 364, 473
PkrI	GCNGC	5 cut(s)	232, 253, 309, 372, 415
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	190
RsaI	GTAC	4 cut(s)	76, 488, 541, 595
RsaNI	GTAC	4 cut(s)	75, 487, 540, 594
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	5 cut(s)	231, 252, 308, 371, 414
Sau3AI	GATC	5 cut(s)	84, 168, 396, 444, 452
ScaI	AGTACT	3 cut(s)	76, 488, 541
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	20, 524
SetI	ASST	5 cut(s)	20, 93, 158, 428, 606
SfcI	CTRYAG	1 cut(s)	513
Sfr303I	CCGCGG	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	368, 370
SspMI	CTAG	4 cut(s)	11, 78, 128, 203
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	1 cut(s)	440
TasI	AATT	1 cut(s)	417
TatI	WGTACW	3 cut(s)	74, 486, 539
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	4 cut(s)	123, 187, 364, 473
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	643
TseI	GCWGC	4 cut(s)	230, 251, 307, 413
TspDTI	ATGAA	8 cut(s)	63, 313, 341, 351, 416, 420, 516, 636
TspRI	CASTG	1 cut(s)	643
VspI	ATTAAT	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	4 cut(s)	11, 78, 128, 203
ZrmI	AGTACT	3 cut(s)	76, 488, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.