Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012221.1

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Forward (+)

48869 .. 49189

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012221.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgaatatacatgaagaaaattgcaacatattgaagaagaatccgcggctttatcagctgcttcagcacgcgatcatgaagaatcatgcagcaattgcaaggtcctcatcatcgtcgacgatcataggatcaaaggggggtcagtttgattcaaacaataactttgatgcacttgttgaagaaactatagtgtgctcttcatcaacaagtactgcttctgatgttcaagatcatgatgattaccattgcgcactttcgtttggtacttctaaggtttattcttctgttgttgttgctcctaccttcagtgctacttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

106

Amino Acids

11.44

Weight (kDa)

5.87

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	2 cut(s)	46, 71
AciI	CCGC	2 cut(s)	44, 46
AclWI	GGATC	1 cut(s)	136
AcuI	CTGAAG	2 cut(s)	47, 289
AfaI	GTAC	2 cut(s)	211, 265
AgsI	TTSAA	4 cut(s)	34, 153, 179, 227
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	58, 89
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	45, 101
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	3 cut(s)	47, 59, 90
BlsI	GCNGC	3 cut(s)	48, 60, 91
BmcAI	AGTACT	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	45, 101
Bsh1236I	CGCG	2 cut(s)	46, 71
BsiHKAI	GWGCWC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	72, 120, 128, 229
BspACI	CCGC	2 cut(s)	44, 46
BspFNI	CGCG	2 cut(s)	46, 71
BspHI	TCATGA	3 cut(s)	75, 232, 317
BspPI	GGATC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	72, 120, 128, 229
Bst6I	CTCTTC	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	46, 71
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	4 cut(s)	75, 123, 131, 232
BstMBI	GATC	4 cut(s)	72, 120, 128, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 95
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	2 cut(s)	46, 71
BstV1I	GCAGC	2 cut(s)	45, 101
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	3 cut(s)	75, 232, 317
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	102
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	210, 264
CviAII	CATG	5 cut(s)	11, 76, 86, 233, 318
CviJI	RGCY	2 cut(s)	49, 58
CviKI_1	RGCY	2 cut(s)	49, 58
CviQI	GTAC	2 cut(s)	210, 264
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	74, 122, 130, 231
DpnII	GATC	4 cut(s)	72, 120, 128, 229
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	47, 289
EcoO109I	RGGNCCY	1 cut(s)	102
FaeI	CATG	5 cut(s)	14, 79, 89, 236, 321
FaiI	YATR	9 cut(s)	8, 12, 29, 77, 87, 125, 188, 234, 319
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FatI	CATG	5 cut(s)	10, 75, 85, 232, 317
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	47, 59, 90
Fsp4HI	GCNGC	3 cut(s)	47, 59, 90
FspI	TGCGCA	1 cut(s)	250
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	47, 59, 90
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	5 cut(s)	14, 79, 89, 236, 321
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	40, 82, 149
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	76, 227, 233, 318
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	2 cut(s)	118, 121
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	24, 89, 98, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 95
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	14, 79, 89, 236, 321
HspAI	GCGC	1 cut(s)	249
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	72, 120, 128, 229
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	45, 101
LweI	GCATC	1 cut(s)	157
MalI	GATC	4 cut(s)	74, 122, 130, 231
MboI	GATC	4 cut(s)	72, 120, 128, 229
MboII	GAAGA	7 cut(s)	26, 46, 49, 91, 189, 191, 273
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	19, 93
MnlI	CCTC	1 cut(s)	115
MspA1I	CMGCKG	2 cut(s)	46, 58
MunI	CAATTG	1 cut(s)	93
MvnI	CGCG	2 cut(s)	46, 71
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 95
NdeII	GATC	4 cut(s)	72, 120, 128, 229
NlaIII	CATG	5 cut(s)	14, 79, 89, 236, 321
NsbI	TGCGCA	1 cut(s)	250
PagI	TCATGA	3 cut(s)	75, 232, 317
PciSI	GCTCTTC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	40, 82, 149
PkrI	GCNGC	3 cut(s)	48, 60, 91
PpuMI	RGGWCCY	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	102
PspPPI	RGGWCCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	211, 265
RsaNI	GTAC	2 cut(s)	210, 264
SacII	CCGCGG	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	47, 59, 90
Sau3AI	GATC	4 cut(s)	72, 120, 128, 229
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	60, 104, 276, 305
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	186
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SgrDI	CGTCGACG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	19, 93
SsiI	CCGC	2 cut(s)	44, 46
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	19, 93
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	3 cut(s)	40, 82, 149
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	58, 89
TspDTI	ATGAA	5 cut(s)	17, 27, 92, 189, 306
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.