Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Forward (+)

16876549 .. 16877674

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACAGCTTAGACAGCAAAAAAGTCCCAGCTGATGACCAATTCCAAACAGAAACTTTCCAAGAAAATAAAGAGAGAATTAGTGCCATGAGAAAAGTGAACAGCAATAATATTAGTGGGAAAAGGTTCCTTGGAGTGAGACAAAGGCCATCAGGAAGATGGGTTGCTGAGATCAAGGACTCTTCACAGAAGCTGAGGTTGTGGTTAGGGACTTTTGATAAAGCAGAGGAGGCTGCATTGGCTTATGATAAGGCTGCTAGGCTTCTAAGAGGAAGGAATGCAAAGACCAACTTTCCATGTCACATCATGAATACCCATGAAGAAAATTGCAGCATCTTGAGAAAGAATCCGAAGCTTTATCAGCTCCTTCAGCATGCAATCATGAAGAACCATGCAATTGCAAGATCCTCGTCTATGAGGATTAATCCGTGGGATCGAAACCAAATCAGAGGAATCGATTTCGATACACTTGTTGAAGAAACAATAGTTTGTTCTTCAAGTGGTAATACCTCTGGTCAAGATCATGATGATCATGAGGATAGAAATAAGCTTTGTGCACTTTCATTTGGTAGTTGTAAAGTTTATTCCTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCAAACTCAATGTCAACAGGCGCATGAAGAAAAAGGTTATCAAGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

225

Amino Acids

25.37

Weight (kDa)

8.71

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	399, 441
AcuI	CTGAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	476, 498
AluBI	AGCT	7 cut(s)	9, 32, 193, 355, 364, 550, 602
AluI	AGCT	7 cut(s)	9, 32, 193, 355, 364, 550, 602
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	399, 441
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	146
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	233, 254, 330
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	220, 241, 342
BccI	CCATC	2 cut(s)	153, 157
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	234, 255, 331
BlsI	GCNGC	3 cut(s)	235, 256, 332
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	130, 428
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	130, 428
BseMII	CTCAG	2 cut(s)	159, 185
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	3 cut(s)	220, 241, 342
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	2 cut(s)	11, 223
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	11, 223
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	171, 404, 433, 520, 529
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	160, 186
BspDI	ATCGAT	1 cut(s)	456
BspHI	TCATGA	4 cut(s)	306, 381, 523, 532
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	399, 441
BssECI	CCNNGG	2 cut(s)	130, 428
BssMI	GATC	5 cut(s)	171, 404, 433, 520, 529
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	10, 168, 194, 266
BstDSI	CCRYGG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	5 cut(s)	174, 407, 436, 523, 532
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	5 cut(s)	171, 404, 433, 520, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 230, 239, 361, 370
BstNSI	RCATGY	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	3 cut(s)	220, 241, 342
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	193
CciI	TCATGA	4 cut(s)	306, 381, 523, 532
CfoI	GCGC	1 cut(s)	646
ClaI	ATCGAT	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	10, 168, 194, 266
DpnI	GATC	5 cut(s)	173, 406, 435, 522, 531
DpnII	GATC	5 cut(s)	171, 404, 433, 520, 529
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	2 cut(s)	11, 223
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	234, 255, 331
Fsp4HI	GCNGC	3 cut(s)	234, 255, 331
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	3 cut(s)	234, 255, 331
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	646
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HindIII	AAGCTT	2 cut(s)	353, 548
HinfI	GANTC	3 cut(s)	179, 346, 453
Hpy166II	GTNNAC	3 cut(s)	100, 557, 638
Hpy188I	TCNGA	2 cut(s)	351, 449
Hpy188III	TCNNGA	8 cut(s)	153, 307, 337, 382, 518, 524, 533, 665
Hpy8I	GTNNAC	3 cut(s)	100, 557, 638
HpyAV	CCTTC	3 cut(s)	267, 377, 615
HpyCH4V	TGCA	7 cut(s)	236, 281, 330, 377, 395, 401, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 230, 239, 361, 370
HpyF3I	CTNAG	4 cut(s)	10, 168, 194, 266
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	171, 404, 433, 520, 529
LmnI	GCTCC	2 cut(s)	369, 607
LpnPI	CCDG	4 cut(s)	42, 138, 498, 626
Lsp1109I	GCAGC	3 cut(s)	220, 241, 342
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	173, 406, 435, 522, 531
MboI	GATC	5 cut(s)	171, 404, 433, 520, 529
MboII	GAAGA	8 cut(s)	168, 174, 332, 397, 486, 488, 612, 662
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	4 cut(s)	41, 78, 325, 396
MlyI	GAGTC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	423, 673
MspA1I	CMGCKG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	283
MwoI	GCNNNNNNNGC	5 cut(s)	15, 230, 239, 361, 370
NdeII	GATC	5 cut(s)	171, 404, 433, 520, 529
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	4 cut(s)	306, 381, 523, 532
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	346, 453
PkrI	GCNGC	3 cut(s)	235, 256, 332
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	423, 673
SatI	GCNGC	3 cut(s)	234, 255, 331
Sau3AI	GATC	5 cut(s)	171, 404, 433, 520, 529
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	4 cut(s)	41, 78, 325, 396
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	130
TaqI	TCGA	3 cut(s)	436, 456, 462
TasI	AATT	4 cut(s)	41, 78, 325, 396
TfiI	GAWTC	2 cut(s)	346, 453
Tru1I	TTAA	2 cut(s)	423, 673
Tru9I	TTAA	2 cut(s)	423, 673
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	233, 254, 330
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	5 cut(s)	323, 333, 398, 552, 663
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	619
VneI	GTGCAC	1 cut(s)	555
VspI	ATTAAT	1 cut(s)	423
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.