Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Forward (+)

19894079 .. 19894741

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACTCATCCTCAGTGTCCCAACCTATCCAAACACAAACTTTCCAAGAAAACAAAAAGAAAACCATGAGAAAAGGTAACAAAAATGGAAAAAGGTTTCTGGGAGTGAGACAAAGACCATCAGGAAGATGGGTGGCTGAAATCAAGGACTCCTCGCAGAAGCTGAGGCTGTGGCTAGGGACTTTCGATCAGGCGGAGGAGGCGGCGTTGGCGTACGATAAGGCTGCTAGGCTCCTAAGAGGCAGGAATGCAAAAACCAACTTTCCCTCATGTCACATGTTGAACACACATGAAGAAAACTGCAGCATATTGAGAAAAAATCCAAGGCTTTATCAGCTCCTTCAGCATGCAATCATGAAGAACCATGCAAGATCCTCGTCTCTAAATAGCGCGAAGATTAATCCGTGGGATCGAAACCAAATTAGAGGAATCGATTTTGATATACTTGTCGAAGAAACTATAGTTTGTTCTTCGAGTGGTGCTGCTTCTACTTCAGGTCAATATCAAGGTGATCACGATGAGGATAGGAATAATAAGCTTTGTGCACTTTCATTTGGTAGTTGTAAAGTTTATTCTTCTGTGGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCAGAGCCAACAGGCGCATGATGAAGAAGAAAAAGGTTATCAAGAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

9.21

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 81	1.4e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	392
AciI	CCGC	2 cut(s)	194, 203
AclWI	GGATC	2 cut(s)	366, 417
AcuI	CTGAAG	2 cut(s)	326, 477
AfaI	GTAC	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	4 cut(s)	163, 337, 538, 590
AluI	AGCT	4 cut(s)	163, 337, 538, 590
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	2 cut(s)	103, 384
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	366, 417
AlwNI	CAGNNNCTG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	657
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	224, 303, 482
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	392, 628
AsuHPI	GGTGA	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	211, 315, 469
BccI	CCATC	2 cut(s)	123, 127
BcgI	CGANNNNNNTGC	4 cut(s)	206, 240, 357, 391
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	103, 384
BfaI	CTAG	2 cut(s)	176, 228
BfmI	CTRYAG	2 cut(s)	301, 459
BisI	GCNGC	4 cut(s)	204, 225, 304, 483
BlsI	GCNGC	4 cut(s)	205, 226, 305, 484
BmiI	GGNNCC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	323, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	323, 404
BseGI	GGATG	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	27, 155, 626
BseRI	GAGGAG	2 cut(s)	142, 212
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	211, 315, 469
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	547
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	4, 193
BsmAI	GTCTC	2 cut(s)	103, 384
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	4, 193
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	187, 371, 409, 511
BspACI	CCGC	2 cut(s)	194, 203
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	3 cut(s)	26, 156, 625
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	2 cut(s)	366, 417
BssECI	CCNNGG	2 cut(s)	323, 404
BssMI	GATC	4 cut(s)	187, 371, 409, 511
BssT1I	CCWWGG	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	13, 164, 236, 612
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	392, 628
BstKTI	GATC	4 cut(s)	190, 374, 412, 514
BstMAI	GTCTC	2 cut(s)	103, 384
BstMBI	GATC	4 cut(s)	187, 371, 409, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 209, 334, 343
BstNSI	RCATGY	2 cut(s)	280, 350
BstSFI	CTRYAG	2 cut(s)	301, 459
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	211, 315, 469
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	659
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	21, 607
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	163
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	2 cut(s)	392, 628
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	8 cut(s)	67, 270, 277, 290, 347, 355, 365, 629
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	13, 164, 236, 612
DpnI	GATC	4 cut(s)	189, 373, 411, 513
DpnII	GATC	4 cut(s)	187, 371, 409, 511
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	659
Eco57I	CTGAAG	2 cut(s)	326, 477
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	8 cut(s)	70, 273, 280, 293, 350, 358, 368, 632
FaqI	GGGAC	2 cut(s)	4, 193
FatI	CATG	8 cut(s)	66, 269, 276, 289, 346, 354, 364, 628
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	204, 225, 304, 483
Fsp4HI	GCNGC	4 cut(s)	204, 225, 304, 483
FspBI	CTAG	2 cut(s)	176, 228
GlaI	GCGC	2 cut(s)	391, 627
GluI	GCNGC	4 cut(s)	204, 225, 304, 483
HaeIII	GGCC	1 cut(s)	659
HhaI	GCGC	2 cut(s)	392, 628
Hin1II	CATG	8 cut(s)	70, 273, 280, 293, 350, 358, 368, 632
Hin6I	GCGC	2 cut(s)	390, 626
HinP1I	GCGC	2 cut(s)	390, 626
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	5, 149, 429
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	4 cut(s)	123, 355, 515, 653
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	350, 603
HpyCH4V	TGCA	5 cut(s)	251, 303, 350, 368, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 209, 334, 343
HpyF3I	CTNAG	4 cut(s)	13, 164, 236, 612
Hsp92II	CATG	8 cut(s)	70, 273, 280, 293, 350, 358, 368, 632
HspAI	GCGC	2 cut(s)	390, 626
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	187, 371, 409, 511
LmnI	GCTCC	3 cut(s)	237, 342, 595
LpnPI	CCDG	6 cut(s)	86, 108, 176, 229, 480, 608
Lsp1109I	GCAGC	3 cut(s)	211, 315, 469
MaeI	CTAG	2 cut(s)	176, 228
MaeIII	GTNAC	2 cut(s)	77, 272
MalI	GATC	4 cut(s)	189, 373, 411, 513
MboI	GATC	4 cut(s)	187, 371, 409, 511
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	4 cut(s)	200, 209, 334, 343
NdeII	GATC	4 cut(s)	187, 371, 409, 511
NlaIII	CATG	8 cut(s)	70, 273, 280, 293, 350, 358, 368, 632
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	2 cut(s)	280, 350
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	659
PciI	ACATGT	1 cut(s)	276
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	429
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	205, 226, 305, 484
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	399
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	204, 225, 304, 483
Sau3AI	GATC	4 cut(s)	187, 371, 409, 511
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	547
SfcI	CTRYAG	2 cut(s)	301, 459
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	659
SsiI	CCGC	2 cut(s)	194, 203
SspMI	CTAG	2 cut(s)	176, 228
StuI	AGGCCT	1 cut(s)	659
StyI	CCWWGG	1 cut(s)	323
TaqI	TCGA	5 cut(s)	186, 412, 432, 450, 473
TasI	AATT	1 cut(s)	420
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	21, 607
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	224, 303, 482
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	306, 371, 540, 648
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	21, 607
VneI	GTGCAC	1 cut(s)	543
VspI	ATTAAT	1 cut(s)	399
XceI	RCATGY	2 cut(s)	280, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	2 cut(s)	176, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.