Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Forward (+)

58894429 .. 58895590

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0464000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGAGCAGGGCTTTGCTTCTGGTGTCTTCTTCTTTGTTACCCAAGAACCAGTTTTTACCCAACTTTAACTCCCACCGAAAAATTCCGCAAGTGCTTCACCGGCGGCGAAGTTTTTCAGCTGCAACAACTGCTGGGTCTTCTCTGGAACCTCTGGATGTGCCACGTCTGGCTGAGACTGCTCGAATTTCTCTGACCCCTCAAGAGGTTGAAGAATTTGCTCCCAAAATTGGACAAGTCATGGAATGGTTTGGACAGCTTCAAGCAGTTGATCTTGAAAGCGTGGAGCCCTCTATAAGAGCAGATACTGAAGGTGATAATTTCCGTGCTGATGTCCCCGAAACATTTGAGAATAGGAATGCCATAATTGCTGCTATTCCAAATTATGAGGAGCCATACATCAAGGTTCCCAAGGTCTTGAACAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

143

Amino Acids

16.0

Weight (kDa)

5.49

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatC	PF02686	65 - 136	7.4e-14	Glu-tRNAGln amidotransferase C subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	89, 106
AcsI	RAATTY	3 cut(s)	84, 186, 215
AcuI	CTGAAG	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	205, 230
AgsI	TTSAA	4 cut(s)	212, 263, 278, 421
AjiI	CACGTC	1 cut(s)	167
AluBI	AGCT	2 cut(s)	122, 259
AluI	AGCT	2 cut(s)	122, 259
Alw26I	GTCTC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	122, 371
ApoI	RAATTY	3 cut(s)	84, 186, 215
Asp700I	GAANNNNTTC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	92, 326
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	2 cut(s)	21, 132
BbvI	GCAGC	2 cut(s)	109, 358
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	107, 123, 372
BlsI	GCNGC	3 cut(s)	108, 124, 373
BmgBI	CACGTC	1 cut(s)	167
BmiI	GGNNCC	4 cut(s)	150, 288, 393, 408
BpiI	GAAGAC	2 cut(s)	21, 132
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 230
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	205, 230
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	109, 358
BseYI	CCCAGC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	205, 230
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	89, 106
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	4 cut(s)	150, 288, 393, 408
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 131, 179, 368
BstV1I	GCAGC	2 cut(s)	109, 358
BstV2I	GAAGAC	2 cut(s)	21, 132
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	102
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	6 cut(s)	14, 122, 173, 259, 289, 394
CviKI_1	RGCY	6 cut(s)	14, 122, 173, 259, 289, 394
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	244
FaiI	YATR	5 cut(s)	242, 296, 365, 387, 397
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	107, 123, 372
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	107, 123, 372
GluI	GCNGC	3 cut(s)	107, 123, 372
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	1 cut(s)	244
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	92, 326
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	5 cut(s)	146, 155, 203, 275, 418
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 131, 179, 368
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	4 cut(s)	6, 226, 286, 391
LpnPI	CCDG	7 cut(s)	8, 65, 116, 120, 131, 140, 155
Lsp1109I	GCAGC	2 cut(s)	109, 358
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	21, 24, 132, 224
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	7 cut(s)	84, 186, 215, 228, 319, 366, 382
MnlI	CCTC	5 cut(s)	162, 199, 210, 301, 382
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	103, 131, 179, 368
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	4 cut(s)	150, 288, 393, 408
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	108, 124, 373
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	150, 288, 393, 408
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	107, 123, 372
Sau3AI	GATC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	124, 154, 169, 210, 261, 316, 408, 417
SgrAI	CRCCGGYG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	7 cut(s)	84, 186, 215, 228, 319, 366, 382
SsiI	CCGC	2 cut(s)	89, 106
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	184
TasI	AATT	7 cut(s)	84, 186, 215, 228, 319, 366, 382
TauI	GCSGC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	2 cut(s)	122, 371
TspGWI	ACGGA	1 cut(s)	314
XapI	RAATTY	3 cut(s)	84, 186, 215
XmnI	GAANNNNTTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.