Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Reverse (-)

64236575 .. 64237219

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGACAGCCTACAGAGCTCAACACCAAACCAAAAAGAAACTTTCCATGAAAATAAAGAGAGTGGTTGTACTAGTACTAGCGCGATCAAGGTTCCGAAAAAAGCAAAGATTAATGGAAGGAGGTTCCTAGGAGTGAGACAAAGGCCATCAGGAAGATGGGTGGCTGAGATCAAGGACTCATCACAGAATTTGAGACTATGGTTAGGAACTTTTGATAGAGCAGAAGAGGCTGCATTGGCTTATGATAAGGCTGCAAGGGTTTTGAGAGGAAGGAATGCAAAGACCAACTTCCCGTCATCTCATCAGCAGCATGGAATGAACTTCATGAATATACATGAAGAAAATTGCAACATGTTGAAGAAGAATCCGCGGCTTTATCAGCTGCTTCAGCACGCGATCATGAAGAATCATGCAGCAGTTGCAAGGTCCTCATCATCGTCGACGATCATAGGATCAAAGGGGGGTCAGTTTGATTCAAACAATAACTTTGATGCACTTGTTGAAGAAACTATAGTGTGCTCTTCATCAACAAGTACTGCTTCTGATGTTCAAGATCATGATGATTACCATTGCGCACTTTCGTTTGGTACTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCCTTCAGTGCTACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

23.59

Weight (kDa)

9.21

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 90	6.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	3 cut(s)	83, 370, 395
AciI	CCGC	2 cut(s)	368, 370
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	371, 613
AfaI	GTAC	4 cut(s)	70, 76, 535, 589
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	4 cut(s)	358, 477, 503, 551
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	2 cut(s)	18, 382
AluI	AGCT	2 cut(s)	18, 382
Alw21I	GWGCWC	2 cut(s)	20, 521
Alw26I	GTCTC	2 cut(s)	130, 187
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	5 cut(s)	230, 251, 307, 382, 413
ApoI	RAATTY	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	111
AspA2I	CCTAGG	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	83, 575
AspS9I	GGNCC	1 cut(s)	426
AvaII	GGWCC	1 cut(s)	426
AvrII	CCTAGG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	20, 521
BbvI	GCAGC	5 cut(s)	217, 238, 319, 369, 425
BccI	CCATC	2 cut(s)	150, 154
BcoDI	GTCTC	2 cut(s)	130, 187
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	3 cut(s)	72, 78, 128
BfmI	CTRYAG	2 cut(s)	11, 510
BisI	GCNGC	6 cut(s)	231, 252, 308, 371, 383, 414
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	6 cut(s)	232, 253, 309, 372, 384, 415
BmcAI	AGTACT	2 cut(s)	76, 535
Bme18I	GGWCC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	93, 125
BmsI	GCATC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	127, 368
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	127, 368
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	5 cut(s)	217, 238, 319, 369, 425
Bsh1236I	CGCG	3 cut(s)	83, 370, 395
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	20, 521
BsmAI	GTCTC	2 cut(s)	130, 187
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	20, 521
Bsp143I	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
BspACI	CCGC	2 cut(s)	368, 370
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	3 cut(s)	83, 370, 395
BspHI	TCATGA	4 cut(s)	324, 399, 556, 641
BspLI	GGNNCC	2 cut(s)	93, 125
BspPI	GGATC	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	127, 368
BssMI	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	219, 526
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	165, 594
BstDSI	CCRYGG	1 cut(s)	368
BstFNI	CGCG	3 cut(s)	83, 370, 395
BstHHI	GCGC	2 cut(s)	83, 575
BstKTI	GATC	6 cut(s)	87, 171, 399, 447, 455, 556
BstMAI	GTCTC	2 cut(s)	130, 187
BstMBI	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 227, 236, 379, 388, 419
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	2 cut(s)	11, 510
BstUI	CGCG	3 cut(s)	83, 370, 395
BstV1I	GCAGC	5 cut(s)	217, 238, 319, 369, 425
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	4 cut(s)	324, 399, 556, 641
CfoI	GCGC	2 cut(s)	83, 575
Cfr13I	GGNCC	1 cut(s)	426
Cfr42I	CCGCGG	1 cut(s)	371
Csp6I	GTAC	4 cut(s)	69, 75, 534, 588
CviAII	CATG	9 cut(s)	47, 311, 325, 335, 352, 400, 410, 557, 642
CviJI	RGCY	9 cut(s)	9, 18, 145, 164, 230, 239, 251, 373, 382
CviKI_1	RGCY	9 cut(s)	9, 18, 145, 164, 230, 239, 251, 373, 382
CviQI	GTAC	4 cut(s)	69, 75, 534, 588
DdeI	CTNAG	2 cut(s)	165, 594
DpnI	GATC	6 cut(s)	86, 170, 398, 446, 454, 555
DpnII	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
Eam1104I	CTCTTC	2 cut(s)	219, 526
EarI	CTCTTC	2 cut(s)	219, 526
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	371, 613
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	9 cut(s)	50, 314, 328, 338, 355, 403, 413, 560, 645
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 523, 555
FatI	CATG	9 cut(s)	46, 310, 324, 334, 351, 399, 409, 556, 641
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	6 cut(s)	231, 252, 308, 371, 383, 414
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	6 cut(s)	231, 252, 308, 371, 383, 414
FspBI	CTAG	3 cut(s)	72, 78, 128
FspI	TGCGCA	1 cut(s)	574
GlaI	GCGC	2 cut(s)	82, 574
GluI	GCNGC	6 cut(s)	231, 252, 308, 371, 383, 414
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	83, 575
Hin1II	CATG	9 cut(s)	50, 314, 328, 338, 355, 403, 413, 560, 645
Hin6I	GCGC	2 cut(s)	81, 573
HinP1I	GCGC	2 cut(s)	81, 573
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	4 cut(s)	176, 364, 406, 473
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	96, 544
Hpy188III	TCNNGA	6 cut(s)	150, 325, 400, 551, 557, 642
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	2 cut(s)	442, 445
HpyAV	CCTTC	4 cut(s)	111, 264, 633, 637
HpyCH4V	TGCA	7 cut(s)	233, 254, 278, 348, 413, 422, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 227, 236, 379, 388, 419
HpyF3I	CTNAG	2 cut(s)	165, 594
Hsp92II	CATG	9 cut(s)	50, 314, 328, 338, 355, 403, 413, 560, 645
HspAI	GCGC	2 cut(s)	81, 573
KspI	CCGCGG	1 cut(s)	371
Kzo9I	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
LguI	GCTCTTC	1 cut(s)	526
LmnI	GCTCC	1 cut(s)	625
LpnPI	CCDG	1 cut(s)	135
Lsp1109I	GCAGC	5 cut(s)	217, 238, 319, 369, 425
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	3 cut(s)	72, 78, 128
MalI	GATC	6 cut(s)	86, 170, 398, 446, 454, 555
MboI	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
MboII	GAAGA	9 cut(s)	165, 236, 350, 370, 373, 415, 513, 515, 597
MhlI	GDGCHC	2 cut(s)	20, 521
MluCI	AATT	2 cut(s)	187, 343
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	114, 220, 260, 439
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	370, 382
Mva1269I	GAATGC	1 cut(s)	280
MvnI	CGCG	3 cut(s)	83, 370, 395
MwoI	GCNNNNNNNGC	6 cut(s)	15, 227, 236, 379, 388, 419
NdeII	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
NlaIII	CATG	9 cut(s)	50, 314, 328, 338, 355, 403, 413, 560, 645
NlaIV	GGNNCC	2 cut(s)	93, 125
NsbI	TGCGCA	1 cut(s)	574
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	4 cut(s)	324, 399, 556, 641
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	526
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	364, 406, 473
PkrI	GCNGC	6 cut(s)	232, 253, 309, 372, 384, 415
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	426
PscI	ACATGT	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	93, 125
PspPI	GGNCC	1 cut(s)	426
PspPPI	RGGWCCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	4 cut(s)	70, 76, 535, 589
RsaNI	GTAC	4 cut(s)	69, 75, 534, 588
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	6 cut(s)	231, 252, 308, 371, 383, 414
Sau3AI	GATC	6 cut(s)	84, 168, 396, 444, 452, 553
Sau96I	GGNCC	1 cut(s)	426
ScaI	AGTACT	2 cut(s)	76, 535
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	20, 521
SetI	ASST	6 cut(s)	20, 93, 125, 384, 428, 600
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	11, 510
Sfr303I	CCGCGG	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	371
SgrDI	CGTCGACG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	426
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	2 cut(s)	187, 343
SsiI	CCGC	2 cut(s)	368, 370
SspMI	CTAG	3 cut(s)	72, 78, 128
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	1 cut(s)	440
TasI	AATT	2 cut(s)	187, 343
TatI	WGTACW	3 cut(s)	68, 74, 533
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	3 cut(s)	364, 406, 473
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	5 cut(s)	230, 251, 307, 382, 413
TspDTI	ATGAA	8 cut(s)	63, 313, 332, 341, 351, 416, 513, 630
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	426
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	3 cut(s)	72, 78, 128
ZrmI	AGTACT	2 cut(s)	76, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.