Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016336

Physical Location & Seq

Genomic Coordinates Forward (+)

22310495 .. 22311163

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACTCATCCTCAATGTCCCAACCTATCCAAACACAAACTTTCCAAGAAAACAAAGAGAAAAACACGAGAAAAGGTAGCAAAAATGGAAAAAGGTTTCTAGGAGTGAGACAAAGACCATCAGGAAGATGGGTAGCTGAGATCAAGGACTCCTCACAGAAGCTGAGACTGTGGTTAGGGACTTTCGATCGGGAAGAGGAGGCGGCGTTGGCGTACGATAAGGCTGCTAGGCTCCTAAGAGGCAGGAATGCAAAAACCAACTTTCCATCATGTCATATCTTGAATACACATGAAGAAAACTGCAGCATCTTGAGAAAGAATCCGAGGCTTTCTCAGCTCCTTCAGCATGCAATCATGAAGAACCATGCAAGATCATCGTCTCTAAATAGTGTGTCGAGCGCAAAGGCTAATCTGTGGGATCGAAGCCAAATGAGAGGGATCGATTTTGATACGCTTGTCGAAGAAACTATAGTCTGTTCATCGAGTGGTGCTGCTACTTCTGGTCAAGATCATGGTGATCACGATGAGGATAGGAATAATAAGCTTTGTGCACTTTCATTTGGTAGTTGTAAAGTTTATTCCTCTGTGGTTGTAGCTCCTTCCTTCAGTTCTTCTTCTCAATGCCAACAGGCGCATAATGAAGAAGAAAAAGATTATCAAGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

223

Amino Acids

24.87

Weight (kDa)

8.73

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 81	3.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12940
malus_domestica	MD06G1208700.v1.1 MD14G1219100.v1.1
prunus_persica	Prupe.5G213800_v2.0.a1
pyrus_communis	pycom06g18640 pycom14g18160
rosa_chinensis	RchiOBHm_Chr7g0184251
rosa_laevigata	RLG00000004991
rosa_multiflora	Rmu_sc0012221.1_g000010 Rmu_sc0012221.1_g000011
rosa_rugosa	Rorug06G0464000
rosa_samantha	Rh7AG081600 Rh7CG066000 Rh7DG065700
rosa_wichuraiana	Rw7G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	426, 446
AcuI	CTGAAG	2 cut(s)	326, 589
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	5 cut(s)	137, 163, 337, 544, 596
AluI	AGCT	5 cut(s)	137, 163, 337, 544, 596
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	3 cut(s)	103, 160, 384
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	426, 446
AlwNI	CAGNNNCTG	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	3 cut(s)	224, 303, 491
AspLEI	GCGC	2 cut(s)	401, 634
AsuHPI	GGTGA	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	553
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BauI	CACGAG	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	211, 315, 478
BccI	CCATC	3 cut(s)	123, 127, 274
BcgI	CGANNNNNNTGC	4 cut(s)	206, 240, 357, 391
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	103, 160, 384
BfaI	CTAG	2 cut(s)	101, 228
BfmI	CTRYAG	2 cut(s)	301, 468
BisI	GCNGC	4 cut(s)	204, 225, 304, 492
BlsI	GCNGC	4 cut(s)	205, 226, 305, 493
BmiI	GGNNCC	1 cut(s)	233
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpuEI	CTTGAG	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	129, 155, 347
BseRI	GAGGAG	2 cut(s)	142, 212
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	211, 315, 478
Bsh1285I	CGRYCG	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	553
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	4, 193
BsmAI	GTCTC	3 cut(s)	103, 160, 384
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	4, 193
BsmI	GAATGC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	130, 156, 346
BspDI	ATCGAT	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	2 cut(s)	426, 446
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	138, 164, 236, 333
BstF5I	GGATG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	401, 634
BstKTI	GATC	7 cut(s)	144, 190, 374, 421, 441, 511, 520
BstMAI	GTCTC	3 cut(s)	103, 160, 384
BstMBI	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 334, 343
BstNSI	RCATGY	1 cut(s)	350
BstSFI	CTRYAG	2 cut(s)	301, 468
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	3 cut(s)	211, 315, 478
Bsu15I	ATCGAT	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	163
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	2 cut(s)	401, 634
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	6 cut(s)	270, 290, 347, 355, 365, 512
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	138, 164, 236, 333
DpnI	GATC	7 cut(s)	143, 189, 373, 420, 440, 510, 519
DpnII	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	326, 589
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	6 cut(s)	273, 293, 350, 358, 368, 515
FaiI	YATR	9 cut(s)	271, 276, 291, 348, 356, 366, 470, 513, 636
FaqI	GGGAC	2 cut(s)	4, 193
FatI	CATG	6 cut(s)	269, 289, 346, 354, 364, 511
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	204, 225, 304, 492
Fsp4HI	GCNGC	4 cut(s)	204, 225, 304, 492
FspBI	CTAG	2 cut(s)	101, 228
GlaI	GCGC	2 cut(s)	400, 633
GluI	GCNGC	4 cut(s)	204, 225, 304, 492
HhaI	GCGC	2 cut(s)	401, 634
Hin1II	CATG	6 cut(s)	273, 293, 350, 358, 368, 515
Hin6I	GCGC	2 cut(s)	399, 632
HinP1I	GCGC	2 cut(s)	399, 632
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	5, 149, 319
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	8 cut(s)	123, 191, 280, 310, 355, 506, 521, 659
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	350, 609, 613
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	251, 303, 350, 368, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 334, 343
HpyF3I	CTNAG	4 cut(s)	138, 164, 236, 333
Hsp92II	CATG	6 cut(s)	273, 293, 350, 358, 368, 515
HspAI	GCGC	2 cut(s)	399, 632
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
LmnI	GCTCC	3 cut(s)	237, 342, 601
LpnPI	CCDG	4 cut(s)	108, 229, 486, 614
Lsp1109I	GCAGC	3 cut(s)	211, 315, 478
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	101, 228
MalI	GATC	7 cut(s)	143, 189, 373, 420, 440, 510, 519
MboI	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
MboII	GAAGA	9 cut(s)	138, 206, 305, 370, 473, 603, 606, 653, 656
MhlI	GDGCHC	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	667
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	209, 334, 343
NdeII	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
NlaIII	CATG	6 cut(s)	273, 293, 350, 358, 368, 515
NlaIV	GGNNCC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	354
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	205, 226, 305, 493
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	4 cut(s)	204, 225, 304, 492
Sau3AI	GATC	7 cut(s)	141, 187, 371, 418, 438, 508, 517
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	8 cut(s)	28, 79, 98, 139, 165, 339, 546, 598
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	2 cut(s)	301, 468
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	1 cut(s)	350
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	101, 228
TaaI	ACNGT	1 cut(s)	171
TaqI	TCGA	6 cut(s)	186, 395, 421, 441, 459, 482
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TseI	GCWGC	3 cut(s)	224, 303, 491
TspDTI	ATGAA	5 cut(s)	306, 371, 468, 546, 654
VneI	GTGCAC	1 cut(s)	549
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	2 cut(s)	101, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.