Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016848

Physical Location & Seq

Genomic Coordinates Reverse (-)

7682805 .. 7684106

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCGTCGTGTACCGCCTCTGCAACTCCGGCGAGTCCTGCTCCGCCACCTCACAACCTCTTCACCTCCACCGCTCCAAACCCACATCCCAATCCCCTCAACCAAACCCACCCATTTCCACTACTCCCAACCCACCATAACCACCGCACCAACCCTTCACTTCCTCAATTCCTTCTCCTCCTTCTCGACCCGACCCGCGCATCCAAACCCGGCCCAACTAGCCCACTCTCTCTCCACCGAACTCCTCCGCGACCCCACCTCCGACGCCCCCTCCGTCGCCCGCCGCCTCCAGTCAACCTTCCCCCGCTTCACTCCGACCCCAACTCTAATCCAATCCGTGCTCAGCCTCTCCGCCGACGCCGACCGCCGCGCGATTCTAGGGTTCCTCACCTGGCTCATCTCCCGCGATAATCTCGACCACGGCGACGAGATCCTCTCCTTGTTCGTCGACCATTTCGGGGAGAGGAGGGACTTCAAGGCGGCGCATGACGCGATTCTCACCGGCCGGAAACTCGCCGGGCCCAAAACAGCCTCGTCGAATTTCGCCGGGATGATCAGAGCAGGCAGGATTCCGCAGGCGGTTGCGTTCTTTGATAAAATGGAGAAGGAGTATGGGATCCGATTGGAGCGAGAAACTGTCAAATTGGCGGCGGAGAAGGTTTGCGAGAATGCCTTTGCGGCCGAGAGAATGGTGAAGCGTTTAGCGAATGAGGTGCCGAGAAATGTGGAGACTTGGAATGTGGTGATTAGGTGTTTGTGTAAGATTAGGAAGACGCAGGATGCGTTGCGCCTGTTTCATAGGATGTGTGGTGAGAAGGGGCTTGCCACGCCGAATGAGAGTACTTATGTTGTGTTGATAAGGGGATTGTATAAGGGGGGTAGGATTGAGGAGGGAGATGCAATGTTGGAGAGGATGAAGAAAGCCGGGTTGAAGGTGGATAACAAGGTGTATTACCGGGTTTTGAAGACATTGTGTAGTGTGGGGAAGTTTGATCATGCAGTGAGTATGGTGAACAAGATGAAGGAGGATGGGTGTGAGCCTGGGGTCAAGGTTTATTTGCTGATGATGGACAAATTGGGAGGTGATTACCGGGTTGATAAAGCGGTTAAAGACAGTAAGCCGGGGCAGTTGAAGCTGCGGCCAAGGCTGCACAAGCTGCATGAGCCTTTTAAGAGGAGGGAGAAGCCTGTGAAGGTGAAGGAAACGATCAGTGAGAAGGTGCAAAGGAAGAGGAGACGTATTAAGCAAGTAAGGTTGCTGTTTGTGAAGAAGCCGATTAGAGGGCTGCATCGACCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

434

Amino Acids

49.34

Weight (kDa)

10.28

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	241 - 291	1.9e-10	PPR repeat family
PPR_2	PF13041	277 - 325	8.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13580
pyrus_communis	pycom06g18150
rosa_chinensis	RchiOBHm_Chr7g0183361
rosa_laevigata	RLG00000005053
rosa_multiflora	Rmu_co8151760.1_g000001 Rmu_sc0000951.1_g000014 Rmu_sc0007887.1_g000001 Rmu_sc0008602.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270510
rosa_rugosa	Rorug06G0457100
rosa_samantha	Rh7BG058500 Rh7CG060100 Rh7DG058200
rosa_wichuraiana	Rw7G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	712
AccBSI	CCGCTC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
AclWI	GGATC	3 cut(s)	424, 610, 623
AcoI	YGGCCR	3 cut(s)	502, 678, 1139
AcsI	RAATTY	1 cut(s)	538
AcyI	GRCGYC	2 cut(s)	264, 357
AfaI	GTAC	2 cut(s)	12, 841
AfiI	CCNNNNNNNGG	2 cut(s)	457, 1280
AgsI	TTSAA	4 cut(s)	475, 931, 964, 1132
AjnI	CCWGG	2 cut(s)	389, 1039
AluBI	AGCT	2 cut(s)	1135, 1156
AluI	AGCT	2 cut(s)	1135, 1156
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	722, 1228
AlwI	GGATC	3 cut(s)	424, 610, 623
AoxI	GGCC	5 cut(s)	210, 502, 518, 678, 1139
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	4 cut(s)	1135, 1147, 1156, 1285
ApoI	RAATTY	1 cut(s)	538
AspLEI	GCGC	4 cut(s)	199, 371, 484, 789
AspS9I	GGNCC	3 cut(s)	211, 518, 519
AsuC2I	CCSGG	7 cut(s)	209, 517, 547, 925, 956, 1091, 1122
AsuHPI	GGTGA	9 cut(s)	54, 379, 490, 703, 754, 821, 1021, 1094, 1207
BaeGI	GKGCMC	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	2 cut(s)	776, 971
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	1122, 1134, 1143, 1272
BccI	CCATC	2 cut(s)	1022, 1060
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	2 cut(s)	391, 1041
BclI	TGATCA	2 cut(s)	552, 991
BcnI	CCSGG	7 cut(s)	209, 517, 547, 925, 956, 1091, 1122
BcoDI	GTCTC	2 cut(s)	722, 1228
BfaI	CTAG	2 cut(s)	218, 377
BglI	GCCNNNNNGGC	1 cut(s)	677
BlpI	GCTNAGC	1 cut(s)	341
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	9 cut(s)	209, 391, 517, 547, 925, 956, 1041, 1091, 1122
BmgT120I	GGNCC	3 cut(s)	211, 518, 519
BmiI	GGNNCC	4 cut(s)	383, 520, 617, 714
BmrFI	CCNGG	9 cut(s)	209, 391, 517, 547, 925, 956, 1041, 1091, 1122
BmsI	GCATC	4 cut(s)	208, 769, 886, 1297
BpiI	GAAGAC	2 cut(s)	776, 971
BplI	GAGNNNNNCTC	4 cut(s)	24, 56, 419, 451
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuMI	CCSGG	7 cut(s)	209, 517, 547, 925, 956, 1091, 1122
BsaHI	GRCGYC	2 cut(s)	264, 357
BsaJI	CCNNGG	4 cut(s)	418, 1040, 1121, 1142
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 1280
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	906
BseBI	CCWGG	2 cut(s)	391, 1041
BseDI	CCNNGG	4 cut(s)	418, 1040, 1121, 1142
BseGI	GGATG	7 cut(s)	84, 199, 555, 784, 807, 918, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	457, 1280
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	6 cut(s)	166, 233, 478, 902, 1189, 1246
BseSI	GKGCMC	1 cut(s)	522
BseX3I	CGGCCG	2 cut(s)	502, 678
BseXI	GCAGC	4 cut(s)	1122, 1134, 1143, 1272
BsgI	GTGCAG	1 cut(s)	1133
Bsh1236I	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
Bsh1285I	CGRYCG	3 cut(s)	364, 505, 681
BshFI	GGCC	5 cut(s)	212, 504, 520, 680, 1141
BshNI	GGYRCC	1 cut(s)	712
BsiEI	CGRYCG	3 cut(s)	364, 505, 681
BsiHKAI	GWGCWC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	457, 1280
BsmAI	GTCTC	2 cut(s)	722, 1228
BsmBI	CGTCTC	1 cut(s)	1228
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	5 cut(s)	212, 504, 520, 680, 1141
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	342, 522
Bsp143I	GATC	5 cut(s)	429, 552, 615, 991, 1206
Bsp1720I	GCTNAGC	1 cut(s)	341
BspANI	GGCC	5 cut(s)	212, 504, 520, 680, 1141
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
BspLI	GGNNCC	4 cut(s)	383, 520, 617, 714
BspPI	GGATC	3 cut(s)	424, 610, 623
BspT107I	GGYRCC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	4 cut(s)	418, 1040, 1121, 1142
BssMI	GATC	5 cut(s)	429, 552, 615, 991, 1206
BssNI	GRCGYC	2 cut(s)	264, 357
BssT1I	CCWWGG	1 cut(s)	1142
Bst2UI	CCWGG	2 cut(s)	391, 1041
Bst4CI	ACNGT	2 cut(s)	637, 1115
Bst6I	CTCTTC	2 cut(s)	64, 1223
BstACI	GRCGYC	2 cut(s)	264, 357
BstAPI	GCANNNNNTGC	1 cut(s)	1156
BstC8I	GCNNGC	4 cut(s)	280, 562, 576, 822
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	7 cut(s)	84, 199, 555, 784, 807, 918, 1033
BstFNI	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
BstHHI	GCGC	4 cut(s)	199, 371, 484, 789
BstKTI	GATC	5 cut(s)	432, 555, 618, 994, 1209
BstMAI	GTCTC	2 cut(s)	722, 1228
BstMBI	GATC	5 cut(s)	429, 552, 615, 991, 1206
BstMCI	CGRYCG	3 cut(s)	364, 505, 681
BstNI	CCWGG	2 cut(s)	391, 1041
BstSCI	CCNGG	9 cut(s)	207, 389, 515, 545, 923, 954, 1039, 1089, 1120
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
BstV1I	GCAGC	4 cut(s)	1122, 1134, 1143, 1272
BstV2I	GAAGAC	2 cut(s)	776, 971
BstX2I	RGATCY	2 cut(s)	429, 615
BstYI	RGATCY	2 cut(s)	429, 615
BstZI	CGGCCG	2 cut(s)	502, 678
BsuRI	GGCC	5 cut(s)	212, 504, 520, 680, 1141
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	7 cut(s)	84, 199, 555, 784, 807, 918, 1033
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	1005, 1216
Cac8I	GCNNGC	4 cut(s)	280, 562, 576, 822
CfoI	GCGC	4 cut(s)	199, 371, 484, 789
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	211, 518, 519
CseI	GACGC	4 cut(s)	272, 365, 497, 781
Csp6I	GTAC	2 cut(s)	11, 840
CviAII	CATG	3 cut(s)	485, 995, 1160
CviQI	GTAC	2 cut(s)	11, 840
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	5 cut(s)	431, 554, 617, 993, 1208
DpnII	GATC	5 cut(s)	429, 552, 615, 991, 1206
EaeI	YGGCCR	3 cut(s)	502, 678, 1139
EagI	CGGCCG	2 cut(s)	502, 678
Eam1104I	CTCTTC	2 cut(s)	64, 1223
EarI	CTCTTC	2 cut(s)	64, 1223
EciI	GGCGGA	3 cut(s)	32, 340, 665
EclXI	CGGCCG	2 cut(s)	502, 678
Eco130I	CCWWGG	1 cut(s)	1142
Eco24I	GRGCYC	1 cut(s)	522
Eco52I	CGGCCG	2 cut(s)	502, 678
EcoRII	CCWGG	2 cut(s)	389, 1039
EcoT14I	CCWWGG	1 cut(s)	1142
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	1142
Esp3I	CGTCTC	1 cut(s)	1228
FaeI	CATG	3 cut(s)	488, 998, 1163
FaiI	YATR	9 cut(s)	137, 486, 612, 798, 846, 870, 996, 1007, 1161
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	3 cut(s)	484, 994, 1159
FauI	CCCGC	4 cut(s)	202, 287, 311, 410
FbaI	TGATCA	2 cut(s)	552, 991
FblI	GTMKAC	1 cut(s)	447
FokI	GGATG	7 cut(s)	71, 186, 562, 791, 814, 925, 1040
FriOI	GRGCYC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	218, 377
GlaI	GCGC	4 cut(s)	198, 370, 483, 788
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	212, 504, 520, 680, 1141
HgaI	GACGC	4 cut(s)	272, 365, 497, 781
HhaI	GCGC	4 cut(s)	199, 371, 484, 789
Hin1I	GRCGYC	2 cut(s)	264, 357
Hin1II	CATG	3 cut(s)	488, 998, 1163
Hin6I	GCGC	4 cut(s)	197, 369, 482, 787
HinP1I	GCGC	4 cut(s)	197, 369, 482, 787
HincII	GTYRAC	2 cut(s)	294, 448
HindII	GTYRAC	2 cut(s)	294, 448
HinfI	GANTC	4 cut(s)	33, 373, 493, 568
HphI	GGTGA	9 cut(s)	54, 379, 490, 703, 754, 821, 1021, 1094, 1207
Hpy166II	GTNNAC	4 cut(s)	11, 294, 448, 1012
Hpy188I	TCNGA	5 cut(s)	262, 315, 557, 620, 1301
Hpy188III	TCNNGA	2 cut(s)	184, 413
Hpy8I	GTNNAC	4 cut(s)	11, 294, 448, 1012
Hpy99I	CGWCG	7 cut(s)	9, 266, 278, 359, 428, 449, 538
HpyCH4III	ACNGT	2 cut(s)	637, 1115
HpyCH4IV	ACGT	1 cut(s)	1237
HpyCH4V	TGCA	7 cut(s)	22, 899, 998, 1150, 1159, 1222, 1288
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	1237
Hsp92I	GRCGYC	2 cut(s)	264, 357
Hsp92II	CATG	3 cut(s)	488, 998, 1163
HspAI	GCGC	4 cut(s)	197, 369, 482, 787
Ksp22I	TGATCA	2 cut(s)	552, 991
Kzo9I	GATC	5 cut(s)	429, 552, 615, 991, 1206
LmnI	GCTCC	3 cut(s)	45, 78, 625
Lsp1109I	GCAGC	4 cut(s)	1122, 1134, 1143, 1272
LweI	GCATC	4 cut(s)	208, 769, 886, 1297
MaeI	CTAG	2 cut(s)	218, 377
MaeII	ACGT	1 cut(s)	1237
MalI	GATC	5 cut(s)	431, 554, 617, 993, 1208
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	5 cut(s)	429, 552, 615, 991, 1206
MboII	GAAGA	6 cut(s)	51, 781, 928, 976, 1240, 1279
MflI	RGATCY	2 cut(s)	429, 615
MhlI	GDGCHC	2 cut(s)	342, 522
MluCI	AATT	4 cut(s)	166, 538, 641, 1073
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	3 cut(s)	285, 338, 885
MseI	TTAA	3 cut(s)	1107, 1170, 1242
MspR9I	CCNGG	9 cut(s)	209, 391, 517, 547, 925, 956, 1041, 1091, 1122
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	391, 1041
MvnI	CGCG	6 cut(s)	197, 249, 369, 371, 405, 491
NciI	CCSGG	7 cut(s)	209, 517, 547, 925, 956, 1091, 1122
NdeII	GATC	5 cut(s)	429, 552, 615, 991, 1206
NlaIII	CATG	3 cut(s)	488, 998, 1163
NlaIV	GGNNCC	4 cut(s)	383, 520, 617, 714
NmeAIII	GCCGAG	2 cut(s)	706, 741
PcsI	WCGNNNNNNNCGW	3 cut(s)	270, 420, 779
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	373, 493, 568
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	389, 1039
PspGI	CCWGG	2 cut(s)	389, 1039
PspN4I	GGNNCC	4 cut(s)	383, 520, 617, 714
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	3 cut(s)	211, 518, 519
PsuI	RGATCY	2 cut(s)	429, 615
RsaI	GTAC	2 cut(s)	12, 841
RsaNI	GTAC	2 cut(s)	11, 840
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	1107, 1170, 1242
Sau3AI	GATC	5 cut(s)	429, 552, 615, 991, 1206
Sau96I	GGNCC	3 cut(s)	211, 518, 519
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	9 cut(s)	209, 391, 517, 547, 925, 956, 1041, 1091, 1122
SduI	GDGCHC	2 cut(s)	342, 522
SfaNI	GCATC	4 cut(s)	208, 769, 886, 1297
Sse9I	AATT	4 cut(s)	166, 538, 641, 1073
SspMI	CTAG	2 cut(s)	218, 377
StyD4I	CCNGG	9 cut(s)	207, 389, 515, 545, 923, 954, 1039, 1089, 1120
StyI	CCWWGG	1 cut(s)	1142
TaaI	ACNGT	2 cut(s)	637, 1115
TaiI	ACGT	1 cut(s)	1240
TaqI	TCGA	5 cut(s)	185, 414, 447, 536, 1291
TasI	AATT	4 cut(s)	166, 538, 641, 1073
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	6 cut(s)	285, 369, 482, 650, 680, 1141
TfiI	GAWTC	3 cut(s)	373, 493, 568
Tru1I	TTAA	3 cut(s)	1107, 1170, 1242
Tru9I	TTAA	3 cut(s)	1107, 1170, 1242
TscAI	CASTG	2 cut(s)	1005, 1216
TseI	GCWGC	4 cut(s)	1135, 1147, 1156, 1285
TspDTI	ATGAA	3 cut(s)	785, 929, 1034
TspGWI	ACGGA	2 cut(s)	262, 325
TspRI	CASTG	2 cut(s)	1005, 1216
XapI	RAATTY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	2 cut(s)	218, 377
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.