Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8151760.1

Orthogroup ID

OG0016848

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 652

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8151760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 652 bp

aacaatctcgatcacggcgaccagattctgtcgtttttcgtggactatttcgggcagaggagggacttcaaggcggcccatgatgtgattcgtatgggccggaaattcgccgggcccaaaaccgctgcttcgaacttcgatgggatggttagagcagggagggtttcgcaggcagttgctttttttgatcatatggacattgagtacgggatcaagagggagagagaagctgtcaaattggcggtggagaaggtctgcgaaaatgcttttgctgccgagagaatggtgaggcggttggccaatgaggttcccaaaaatgtggagacttggaatgtggtggttagttgcttgtgtaagattaggaagacggaggatgcattgaagttgtttcacagaatgtgtggtatggggggtcgtgagccggggtttggtccgaatgagactacttatgttgtattggttaggagcttgtacaaggcggggaggattgaggagggggatgcaatgcttgagaggatgaaggcggcggggcttaaggttgataacagggtttattatcggattttgaagacattgtctagtgttgggaagtttgatcatgcggtgagtcttgtgaagaagatgaaggaggatgggtgtgagcctggggtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

9.27

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13580
pyrus_communis	pycom06g18150
rosa_chinensis	RchiOBHm_Chr7g0183361
rosa_laevigata	RLG00000005053
rosa_multiflora	Rmu_co8151760.1_g000001 Rmu_sc0000951.1_g000014 Rmu_sc0007887.1_g000001 Rmu_sc0008602.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270510
rosa_rugosa	Rorug06G0457100
rosa_samantha	Rh7BG058500 Rh7CG060100 Rh7DG058200
rosa_wichuraiana	Rw7G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	74, 123, 242, 292, 479, 524, 527, 602
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	206, 473
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	70, 382, 568
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	2 cut(s)	230, 468
AluI	AGCT	2 cut(s)	230, 468
Alw26I	GTCTC	2 cut(s)	317, 434
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	75, 97, 113, 297
ApaI	GGGCCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	125, 272
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	5 cut(s)	76, 97, 113, 114, 431
AsuC2I	CCSGG	2 cut(s)	112, 423
AsuHPI	GGTGA	2 cut(s)	298, 616
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	371, 575
BbvI	GCAGC	2 cut(s)	112, 259
BccI	CCATC	3 cut(s)	134, 139, 626
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	2 cut(s)	187, 595
BcnI	CCSGG	2 cut(s)	112, 423
BcoDI	GTCTC	2 cut(s)	317, 434
BfaI	CTAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	4 cut(s)	75, 126, 273, 525
BlsI	GCNGC	4 cut(s)	76, 127, 274, 526
Bme1390I	CCNGG	3 cut(s)	112, 423, 645
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	5 cut(s)	76, 97, 113, 114, 431
BmiI	GGNNCC	2 cut(s)	115, 309
BmrFI	CCNGG	3 cut(s)	112, 423, 645
BmsI	GCATC	2 cut(s)	364, 490
BpiI	GAAGAC	2 cut(s)	371, 575
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	2 cut(s)	112, 423
BsaJI	CCNNGG	2 cut(s)	422, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	422, 644
BseGI	GGATG	5 cut(s)	150, 379, 505, 522, 637
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	73, 506
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	112, 259
BshFI	GGCC	4 cut(s)	77, 99, 115, 299
BsiSI	CCGG	3 cut(s)	100, 111, 422
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	317, 434
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	77, 99, 115, 299
Bsp119I	TTCGAA	1 cut(s)	131
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	10, 187, 210, 595
BspACI	CCGC	8 cut(s)	74, 123, 242, 292, 479, 524, 527, 602
BspANI	GGCC	4 cut(s)	77, 99, 115, 299
BspLI	GGNNCC	2 cut(s)	115, 309
BspPI	GGATC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	510
BsrGI	TGTACA	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	422, 644
BssMI	GATC	4 cut(s)	10, 187, 210, 595
Bst2UI	CCWGG	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	5 cut(s)	150, 379, 505, 522, 637
BstKTI	GATC	4 cut(s)	13, 190, 213, 598
BstMAI	GTCTC	2 cut(s)	317, 434
BstMBI	GATC	4 cut(s)	10, 187, 210, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	3 cut(s)	110, 421, 643
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	112, 259
BstV2I	GAAGAC	2 cut(s)	371, 575
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	77, 99, 115, 299
BtsCI	GGATG	5 cut(s)	150, 379, 505, 522, 637
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr13I	GGNCC	5 cut(s)	76, 97, 113, 114, 431
Csp6I	GTAC	2 cut(s)	205, 472
CviAII	CATG	2 cut(s)	80, 599
CviJI	RGCY	9 cut(s)	77, 99, 115, 230, 299, 421, 468, 532, 643
CviKI_1	RGCY	9 cut(s)	77, 99, 115, 230, 299, 421, 468, 532, 643
CviQI	GTAC	2 cut(s)	205, 472
DpnI	GATC	4 cut(s)	12, 189, 212, 597
DpnII	GATC	4 cut(s)	10, 187, 210, 595
EaeI	YGGCCR	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	2 cut(s)	83, 602
FaiI	YATR	7 cut(s)	81, 95, 192, 194, 407, 450, 600
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	2 cut(s)	79, 598
FauI	CCCGC	2 cut(s)	472, 520
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	2 cut(s)	187, 595
Fnu4HI	GCNGC	4 cut(s)	75, 126, 273, 525
FokI	GGATG	5 cut(s)	157, 386, 512, 529, 644
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	4 cut(s)	75, 126, 273, 525
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	4 cut(s)	75, 126, 273, 525
HaeIII	GGCC	4 cut(s)	77, 99, 115, 299
HapII	CCGG	3 cut(s)	100, 111, 422
Hin1II	CATG	2 cut(s)	83, 602
HinfI	GANTC	3 cut(s)	25, 88, 607
HpaII	CCGG	3 cut(s)	100, 111, 422
HphI	GGTGA	2 cut(s)	298, 616
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	435, 561
Hpy188III	TCNNGA	3 cut(s)	8, 214, 416
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	244, 514, 619
HpyCH4V	TGCA	2 cut(s)	377, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	83, 602
Ksp22I	TGATCA	2 cut(s)	187, 595
Kzo9I	GATC	4 cut(s)	10, 187, 210, 595
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	8 cut(s)	35, 113, 124, 141, 155, 435, 532, 630
Lsp1109I	GCAGC	2 cut(s)	112, 259
LweI	GCATC	2 cut(s)	364, 490
MaeI	CTAG	1 cut(s)	579
MalI	GATC	4 cut(s)	12, 189, 212, 597
MboI	GATC	4 cut(s)	10, 187, 210, 595
MboII	GAAGA	4 cut(s)	376, 580, 628, 631
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	104, 236
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	3 cut(s)	100, 111, 422
MspR9I	CCNGG	3 cut(s)	112, 423, 645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	2 cut(s)	112, 423
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	4 cut(s)	10, 187, 210, 595
NlaIII	CATG	2 cut(s)	83, 602
NlaIV	GGNNCC	2 cut(s)	115, 309
NmeAIII	GCCGAG	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	25, 88
PflFI	GACNNNGTC	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	76, 127, 274, 526
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	115, 309
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	5 cut(s)	76, 97, 113, 114, 431
PstNI	CAGNNNCTG	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	574
RsaI	GTAC	2 cut(s)	206, 473
RsaNI	GTAC	2 cut(s)	205, 472
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	75, 126, 273, 525
Sau3AI	GATC	4 cut(s)	10, 187, 210, 595
Sau96I	GGNCC	5 cut(s)	76, 97, 113, 114, 431
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	3 cut(s)	112, 423, 645
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	232, 255, 309, 470, 540
SfaNI	GCATC	2 cut(s)	364, 490
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	509, 533
SmoI	CTYRAG	2 cut(s)	509, 533
Sse9I	AATT	2 cut(s)	104, 236
SsiI	CCGC	8 cut(s)	74, 123, 242, 292, 479, 524, 527, 602
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	3 cut(s)	110, 421, 643
TaqI	TCGA	3 cut(s)	9, 131, 138
TasI	AATT	2 cut(s)	104, 236
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	2 cut(s)	77, 527
TfiI	GAWTC	2 cut(s)	25, 88
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TseI	GCWGC	2 cut(s)	125, 272
TspDTI	ATGAA	2 cut(s)	533, 638
TspGWI	ACGGA	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	574
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	579
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.