Rh7CG060100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
4328911 .. 4330218
1308 bp
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UTR
Exon/CDS
Intron
Rh7CG060100.1

Sequence Viewer

Length: 1308 bp
ATGCGACCTTTACCGGCTCTGCAACTCCGGCGACTTCTGCTCCGCCACCTCTCAACCTCTTCTCCTCCGCTGCCGCTTCAAACCCACATCCCATTTCCCTCAAACAAACCCACATCCCATTTCCACAATTCCCAACCCACCAAAACCACCGCATCAATCTCTCACCCCAAACCCTTCTCCTCCTCCATCTCAACCCGACCCGACCCACATCCCAACCAGGCCCAATTAGCCCACTCCCTCTCCACCGAGCTCCTGCGCGACCCCGACTCCGACGCTCCCTCCGTCTCCCGCCGCCTCCAATCGACCTTCCCCCGCTTCACTCCGACGCCGTCTCTGGTCCGGTCCGTACTCCACCTCTCCGCCGACGCCGACCGCCGCGCAATTCTAGGATTCTACAGCCGGCTCATCTCGAATAATAATCTCGATCACGGCGACCAGATTCTGTCGTTTTTCGTGGACTATTTCGGGCAGAGGAGGGACTTCAAGGCGGCCCATGATGTGATTCGTATGGGCCGGAAATTCGCCGGGCCCAAAACCGCTGCTTCGAACTTTGATGGGATGGTTAGAGCAGGGAGGGTTTCGCAGGCTGTTGCTTTTTTTGATCATATGGACATTGAGTATGGGATCAAGAGGGAGAGAGGAGCTGTCAAATTGGCGGTGGAGAAGGTCTGCGAAAATGCTTTTGCTGCCGAGAGAATGGTGAGGCGGTTGGCCAATGAGGTTCCGAAAAATGTGGAGACTTGGAATGTGGTGGTTAGTTGTTTGTGTAAGATTAGGAAGACGGAGGATGCATTGAAGTTGTTTCATAGAATGTGTGGTATGGGGGGTCGTGAGCCGAATGAGACTACTTATGTTGTGTTGGTTAGGAGCTTGTACAAGGCGGGGAGGATTGAGGAGGGAGATGCAATGCTTGAGAGGATGAAGGCGGCGGGGCTTAAGGTTGATAACAAGGTTTATTATCGGATTTTGAAGACATTGTCTAGTGTTGGGAAGTTTGATCATGCGGTGAGTCTTGTGAAGAAGATGAAGGAGGATGGGTGTGAGCCTGGGGTCAAGGTTTATCTGCTGATGATGGATAAGTTGAGTGGTGATTACCGGGTTGATAAAGCGGTTGCACTCACCAAGCCGGGGCAGTTGAAGCTGAGGCCGAGGTTGCACAAGCTGCACGAGCCTTTCAAGAGGAAGCAGAAGCCTGTGAAGCAGAAGGAAACAATCAGTGAGAAGGTGAAAAGGAAGAGGAGACGTATTAAGCAAGTAAGGTTGCTATTTGTTAAGAAGCCCATAAGAGGGCTGCATCGACCCTTCTGA

Protein Analysis

435

Amino Acids

49.48

Weight (kDa)

10.35

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 243 - 293 4.7e-10 PPR repeat family
PPR PF01535 247 - 275 2.9e-06 PPR repeat
PPR_3 PF13812 304 - 356 7.8e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016848)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 258, 378
AclWI GGATC 1 cut(s) 632
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 326, 366
AfaI GTAC 2 cut(s) 348, 875
AfiI CCNNNNNNNGG 3 cut(s) 1128, 1286, 1287
AflII CTTAAG 1 cut(s) 935
AgsI TTSAA 6 cut(s) 80, 484, 796, 970, 1138, 1177
AjnI CCWGG 2 cut(s) 216, 1045
AluBI AGCT 5 cut(s) 250, 644, 870, 1141, 1162
AluI AGCT 5 cut(s) 250, 644, 870, 1141, 1162
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 5 cut(s) 289, 336, 731, 836, 1234
AlwI GGATC 1 cut(s) 632
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 6 cut(s) 219, 489, 511, 527, 711, 1145
ApaI GGGCCC 1 cut(s) 531
ApeKI GCWGC 5 cut(s) 70, 539, 686, 1162, 1291
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 2 cut(s) 258, 380
AspS9I GGNCC 7 cut(s) 220, 337, 342, 490, 511, 527, 528
AsuC2I CCSGG 3 cut(s) 526, 1097, 1128
AsuHPI GGTGA 6 cut(s) 155, 712, 1018, 1100, 1111, 1237
AsuII TTCGAA 1 cut(s) 545
AvaII GGWCC 2 cut(s) 337, 342
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 713
BanII GRGCYC 2 cut(s) 252, 531
BauI CACGAG 1 cut(s) 1166
BbsI GAAGAC 2 cut(s) 785, 977
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 1142
BbvI GCAGC 5 cut(s) 57, 526, 673, 1149, 1278
BccI CCATC 5 cut(s) 194, 548, 553, 1028, 1066
BceAI ACGGC 2 cut(s) 313, 445
BciT130I CCWGG 2 cut(s) 218, 1047
BclI TGATCA 2 cut(s) 601, 997
BcnI CCSGG 3 cut(s) 526, 1097, 1128
BcoDI GTCTC 5 cut(s) 289, 336, 731, 836, 1234
BfaI CTAG 2 cut(s) 386, 981
BfmI CTRYAG 1 cut(s) 394
BfrI CTTAAG 1 cut(s) 935
Bme1390I CCNGG 5 cut(s) 218, 526, 1047, 1097, 1128
Bme18I GGWCC 2 cut(s) 337, 342
BmgT120I GGNCC 7 cut(s) 220, 337, 342, 490, 511, 527, 528
BmiI GGNNCC 2 cut(s) 529, 723
BmrFI CCNGG 5 cut(s) 218, 526, 1047, 1097, 1128
BmsI GCATC 4 cut(s) 161, 778, 892, 1303
BpiI GAAGAC 2 cut(s) 785, 977
Bpu10I CCTNAGC 1 cut(s) 1142
Bpu14I TTCGAA 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 3 cut(s) 526, 1097, 1128
BsaHI GRCGYC 2 cut(s) 326, 366
BsaJI CCNNGG 3 cut(s) 1046, 1127, 1148
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 1128, 1286, 1287
Bse118I RCCGGY 2 cut(s) 13, 399
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 2 cut(s) 218, 1047
BseDI CCNNGG 3 cut(s) 1046, 1127, 1148
BseGI GGATG 7 cut(s) 87, 113, 208, 564, 793, 924, 1039
BseLI CCNNNNNNNGG 3 cut(s) 1128, 1286, 1287
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 1 cut(s) 1133
BseRI GAGGAG 7 cut(s) 54, 169, 172, 487, 654, 908, 1252
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 5 cut(s) 57, 526, 673, 1149, 1278
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 2 cut(s) 258, 378
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 6 cut(s) 221, 491, 513, 529, 713, 1147
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 8 cut(s) 14, 28, 340, 400, 514, 525, 1096, 1127
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 1128, 1286, 1287
BsmAI GTCTC 5 cut(s) 289, 336, 731, 836, 1234
BsmBI CGTCTC 3 cut(s) 289, 336, 1234
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 6 cut(s) 221, 491, 513, 529, 713, 1147
Bsp119I TTCGAA 1 cut(s) 545
Bsp120I GGGCCC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 252, 531
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 4 cut(s) 424, 601, 624, 997
BspANI GGCC 6 cut(s) 221, 491, 513, 529, 713, 1147
BspCNI CTCAG 1 cut(s) 1134
BspFNI CGCG 2 cut(s) 258, 378
BspLI GGNNCC 2 cut(s) 529, 723
BspPI GGATC 1 cut(s) 632
BspT104I TTCGAA 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 2 cut(s) 13, 399
BsrGI TGTACA 1 cut(s) 873
BssAI RCCGGY 2 cut(s) 13, 399
BssECI CCNNGG 3 cut(s) 1046, 1127, 1148
BssMI GATC 4 cut(s) 424, 601, 624, 997
BssNI GRCGYC 2 cut(s) 326, 366
BssSI CACGAG 1 cut(s) 1166
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 2 cut(s) 218, 1047
Bst6I CTCTTC 2 cut(s) 64, 1229
BstACI GRCGYC 2 cut(s) 326, 366
BstAFI CTTAAG 1 cut(s) 935
BstAPI GCANNNNNTGC 1 cut(s) 1162
BstAUI TGTACA 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 401, 585
BstDEI CTNAG 1 cut(s) 1142
BstF5I GGATG 7 cut(s) 87, 113, 208, 564, 793, 924, 1039
BstFNI CGCG 2 cut(s) 258, 378
BstHHI GCGC 2 cut(s) 258, 380
BstKTI GATC 4 cut(s) 427, 604, 627, 1000
BstMAI GTCTC 5 cut(s) 289, 336, 731, 836, 1234
BstMBI GATC 4 cut(s) 424, 601, 624, 997
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 9 cut(s) 28, 37, 227, 686, 1138, 1153, 1162, 1168, 1198
BstNI CCWGG 2 cut(s) 218, 1047
BstSCI CCNGG 5 cut(s) 216, 524, 1045, 1095, 1126
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 2 cut(s) 258, 378
BstV1I GCAGC 5 cut(s) 57, 526, 673, 1149, 1278
BstV2I GAAGAC 2 cut(s) 785, 977
BsuRI GGCC 6 cut(s) 221, 491, 513, 529, 713, 1147
BtsCI GGATG 7 cut(s) 87, 113, 208, 564, 793, 924, 1039
BtsIMutI CAGTG 1 cut(s) 1222
Cac8I GCNNGC 2 cut(s) 401, 585
CaiI CAGNNNCTG 1 cut(s) 442
CfoI GCGC 2 cut(s) 258, 380
Cfr10I RCCGGY 2 cut(s) 13, 399
Cfr13I GGNCC 7 cut(s) 220, 337, 342, 490, 511, 527, 528
CpoI CGGWCCG 1 cut(s) 342
CseI GACGC 3 cut(s) 281, 334, 374
Csp6I GTAC 2 cut(s) 347, 874
CspI CGGWCCG 1 cut(s) 342
CviAII CATG 2 cut(s) 494, 1001
CviQI GTAC 2 cut(s) 347, 874
DdeI CTNAG 1 cut(s) 1142
DpnI GATC 4 cut(s) 426, 603, 626, 999
DpnII GATC 4 cut(s) 424, 601, 624, 997
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 64, 1229
EarI CTCTTC 2 cut(s) 64, 1229
EciI GGCGGA 2 cut(s) 32, 349
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 252, 531
Eco47I GGWCC 2 cut(s) 337, 342
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 216, 1045
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 2 cut(s) 252, 531
Esp3I CGTCTC 3 cut(s) 289, 336, 1234
FaeI CATG 2 cut(s) 497, 1004
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 493, 1000
FauI CCCGC 4 cut(s) 296, 320, 874, 922
FauNDI CATATG 1 cut(s) 606
FbaI TGATCA 2 cut(s) 601, 997
FokI GGATG 7 cut(s) 74, 100, 195, 571, 800, 931, 1046
FriOI GRGCYC 2 cut(s) 252, 531
FspBI CTAG 2 cut(s) 386, 981
GlaI GCGC 2 cut(s) 257, 379
HaeIII GGCC 6 cut(s) 221, 491, 513, 529, 713, 1147
HapII CCGG 8 cut(s) 14, 28, 340, 400, 514, 525, 1096, 1127
HgaI GACGC 3 cut(s) 281, 334, 374
HhaI GCGC 2 cut(s) 258, 380
Hin1I GRCGYC 2 cut(s) 326, 366
Hin1II CATG 2 cut(s) 497, 1004
Hin6I GCGC 2 cut(s) 256, 378
HinP1I GCGC 2 cut(s) 256, 378
HinfI GANTC 5 cut(s) 266, 390, 439, 502, 1009
HpaII CCGG 8 cut(s) 14, 28, 340, 400, 514, 525, 1096, 1127
HphI GGTGA 6 cut(s) 155, 712, 1018, 1100, 1111, 1237
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 5 cut(s) 271, 324, 726, 963, 1307
Hpy188III TCNNGA 5 cut(s) 409, 422, 628, 830, 1177
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 3 cut(s) 275, 328, 368
HpyAV CCTTC 7 cut(s) 184, 316, 658, 916, 1021, 1198, 1216
HpyCH4IV ACGT 1 cut(s) 1243
HpyCH4V TGCA 7 cut(s) 22, 791, 905, 1115, 1156, 1165, 1294
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 37, 227, 686, 1138, 1153, 1162, 1168, 1198
HpyF3I CTNAG 1 cut(s) 1142
HpySE526I ACGT 1 cut(s) 1243
Hsp92I GRCGYC 2 cut(s) 326, 366
Hsp92II CATG 2 cut(s) 497, 1004
HspAI GCGC 2 cut(s) 256, 378
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
Ksp22I TGATCA 2 cut(s) 601, 997
Kzo9I GATC 4 cut(s) 424, 601, 624, 997
LmnI GCTCC 5 cut(s) 45, 255, 280, 641, 867
Lsp1109I GCAGC 5 cut(s) 57, 526, 673, 1149, 1278
LweI GCATC 4 cut(s) 161, 778, 892, 1303
MaeI CTAG 2 cut(s) 386, 981
MaeII ACGT 1 cut(s) 1243
MalI GATC 4 cut(s) 426, 603, 626, 999
MboI GATC 4 cut(s) 424, 601, 624, 997
MboII GAAGA 6 cut(s) 51, 790, 982, 1030, 1033, 1246
MhlI GDGCHC 2 cut(s) 252, 531
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 5 cut(s) 127, 224, 381, 518, 650
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 2 cut(s) 260, 1018
MmeI TCCRAC 2 cut(s) 294, 347
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 399
MscI TGGCCA 1 cut(s) 713
MseI TTAA 3 cut(s) 936, 1248, 1272
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 70, 539
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 8 cut(s) 14, 28, 340, 400, 514, 525, 1096, 1127
MspR9I CCNGG 5 cut(s) 218, 526, 1047, 1097, 1128
MvaI CCWGG 2 cut(s) 218, 1047
MvnI CGCG 2 cut(s) 258, 378
MwoI GCNNNNNNNGC 9 cut(s) 28, 37, 227, 686, 1138, 1153, 1162, 1168, 1198
NaeI GCCGGC 1 cut(s) 401
NciI CCSGG 3 cut(s) 526, 1097, 1128
NdeI CATATG 1 cut(s) 606
NdeII GATC 4 cut(s) 424, 601, 624, 997
NgoMIV GCCGGC 1 cut(s) 399
NlaIII CATG 2 cut(s) 497, 1004
NlaIV GGNNCC 2 cut(s) 529, 723
NmeAIII GCCGAG 2 cut(s) 715, 1173
NsiI ATGCAT 1 cut(s) 793
NspV TTCGAA 1 cut(s) 545
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 429
PdiI GCCGGC 1 cut(s) 401
PfeI GAWTC 3 cut(s) 390, 439, 502
PflFI GACNNNGTC 2 cut(s) 328, 976
PleI GAGTC 2 cut(s) 260, 1017
PpsI GAGTC 2 cut(s) 260, 1017
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 216, 1045
PspGI CCWGG 2 cut(s) 216, 1045
PspN4I GGNNCC 2 cut(s) 529, 723
PspOMI GGGCCC 1 cut(s) 527
PspPI GGNCC 7 cut(s) 220, 337, 342, 490, 511, 527, 528
PstNI CAGNNNCTG 1 cut(s) 442
PsyI GACNNNGTC 2 cut(s) 328, 976
RsaI GTAC 2 cut(s) 348, 875
RsaNI GTAC 2 cut(s) 347, 874
Rsr2I CGGWCCG 1 cut(s) 342
RsrII CGGWCCG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 936, 1248, 1272
Sau3AI GATC 4 cut(s) 424, 601, 624, 997
Sau96I GGNCC 7 cut(s) 220, 337, 342, 490, 511, 527, 528
SchI GAGTC 2 cut(s) 260, 1018
ScrFI CCNGG 5 cut(s) 218, 526, 1047, 1097, 1128
SduI GDGCHC 2 cut(s) 252, 531
SfaNI GCATC 4 cut(s) 161, 778, 892, 1303
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 545
SinI GGWCC 2 cut(s) 337, 342
SmlI CTYRAG 2 cut(s) 911, 935
SmoI CTYRAG 2 cut(s) 911, 935
Sse9I AATT 5 cut(s) 127, 224, 381, 518, 650
SspMI CTAG 2 cut(s) 386, 981
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 5 cut(s) 216, 524, 1045, 1095, 1126
TaiI ACGT 1 cut(s) 1246
TaqI TCGA 5 cut(s) 302, 410, 423, 545, 1297
TasI AATT 5 cut(s) 127, 224, 381, 518, 650
TatI WGTACW 1 cut(s) 873
TauI GCSGC 5 cut(s) 76, 294, 378, 491, 929
TfiI GAWTC 3 cut(s) 390, 439, 502
Tru1I TTAA 3 cut(s) 936, 1248, 1272
Tru9I TTAA 3 cut(s) 936, 1248, 1272
TscAI CASTG 1 cut(s) 1222
TseI GCWGC 5 cut(s) 70, 539, 686, 1162, 1291
TspDTI ATGAA 3 cut(s) 794, 935, 1040
TspGWI ACGGA 3 cut(s) 271, 334, 797
TspRI CASTG 1 cut(s) 1222
Tth111I GACNNNGTC 2 cut(s) 328, 976
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 2 cut(s) 337, 342
XapI RAATTY 1 cut(s) 518
XspI CTAG 2 cut(s) 386, 981
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.