Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000951.1

Orthogroup ID

OG0016848

Physical Location & Seq

Genomic Coordinates Reverse (-)

74936 .. 76252

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000951.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgcgaccttcaccggctctgcaactccggcgacttctgctccgccacctctcaacctcttctcctccgctgccgcttcaaacccacatcccatttccctcaaacaaacccacccatttccacaattcccaacccaccataaccaccgcatcaatctctcaccccaaacccttctcctcctccatctcaacccgacccgtcccacatcccaacccggaccaattagcccactccctctccaccgagctcctgcgcgaccccgactccgacgctccctccgtctcccgccgcctccaatcgaccttcccccgcttcgctccgacgccgtctctggtcaggtccgtactcgacctctcggccgacgccgaccgccgcgcaattctaggattctacagccggctcatctcgaacaacaatctcgatcacggcgaccagattctgtcgtttttcgtggactatttcgggcagaggagggacttcaaggcggcccatgatgtgattcgtatgggccggaaattcgccgggcccaaaaccgctgcttcgaacttcgatgggatggttagagcagggagggtttcgcaggcagttgctttttttgatcatatggacattgagtacgggatcaagagggagagagaagctgtcaaattggcggtggagaaggtctgcgaaaatgcttttgctgccgagagaatggtgaggcggttggccaatgaggttcccaaaaatgtggagacttggaatgtggtggttagttgcttgtgtaagattaggaagacggaggatgcattgaagttgtttcacagaatgtgtggtatggggggtcgtgagccggggtttggtccgaatgagactacttatgttgtattggttaggagcttgtacaaggcggggaggattgaggagggggatgcaatgcttgagaggatgaaggcggcggggcttaaggttgataacagggtttattatcggattttgaagacattgtctagtgttgggaagtttgatcatgcggtgagtcttgtgaagaagatgaaggaggatgggtgtgagcctggggtcagggtttatctgctgatgatggataagttgagtggtgattaccgggttgatcaagcggttgcactcaccaagccggggcagttgaagctgaggccgaggttgcacgagctgcacgagcctttcaagaggaagcagaagcctgtgaagcacaaggaaacaatcagtgagaaggtgaagaggaagaggagacgtattaagcaagtaaggttgctatttgttaagaagcccataagagggctgcatcgacccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

438

Amino Acids

49.8

Weight (kDa)

10.25

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13580
pyrus_communis	pycom06g18150
rosa_chinensis	RchiOBHm_Chr7g0183361
rosa_laevigata	RLG00000005053
rosa_multiflora	Rmu_co8151760.1_g000001 Rmu_sc0000951.1_g000014 Rmu_sc0007887.1_g000001 Rmu_sc0008602.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270510
rosa_rugosa	Rorug06G0457100
rosa_samantha	Rh7BG058500 Rh7CG060100 Rh7DG058200
rosa_wichuraiana	Rw7G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	255, 375
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	2 cut(s)	357, 708
AcsI	RAATTY	1 cut(s)	515
AcyI	GRCGYC	2 cut(s)	323, 363
AfaI	GTAC	3 cut(s)	345, 617, 884
AfiI	CCNNNNNNNGG	4 cut(s)	839, 1137, 1295, 1296
AflII	CTTAAG	1 cut(s)	944
AgsI	TTSAA	6 cut(s)	80, 481, 793, 979, 1147, 1186
AjnI	CCWGG	1 cut(s)	1054
AluBI	AGCT	5 cut(s)	247, 641, 879, 1150, 1171
AluI	AGCT	5 cut(s)	247, 641, 879, 1150, 1171
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	5 cut(s)	286, 333, 728, 845, 1243
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	6 cut(s)	357, 486, 508, 524, 708, 1154
ApaI	GGGCCC	1 cut(s)	528
ApeKI	GCWGC	5 cut(s)	70, 536, 683, 1171, 1300
ApoI	RAATTY	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	255, 377
AspS9I	GGNCC	7 cut(s)	217, 339, 487, 508, 524, 525, 842
AsuC2I	CCSGG	5 cut(s)	215, 523, 834, 1106, 1137
AsuHPI	GGTGA	7 cut(s)	3, 152, 709, 1027, 1109, 1120, 1246
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	3 cut(s)	217, 339, 842
BaeGI	GKGCMC	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	710
BanII	GRGCYC	2 cut(s)	249, 528
BauI	CACGAG	2 cut(s)	1166, 1175
BbsI	GAAGAC	2 cut(s)	782, 986
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	1151
BbvI	GCAGC	5 cut(s)	57, 523, 670, 1158, 1287
BccI	CCATC	5 cut(s)	191, 545, 550, 1037, 1075
BceAI	ACGGC	2 cut(s)	310, 442
BciT130I	CCWGG	1 cut(s)	1056
BclI	TGATCA	3 cut(s)	598, 1006, 1111
BcnI	CCSGG	5 cut(s)	215, 523, 834, 1106, 1137
BcoDI	GTCTC	5 cut(s)	286, 333, 728, 845, 1243
BfaI	CTAG	2 cut(s)	383, 990
BfmI	CTRYAG	1 cut(s)	391
BfrI	CTTAAG	1 cut(s)	944
Bme1390I	CCNGG	6 cut(s)	215, 523, 834, 1056, 1106, 1137
Bme18I	GGWCC	3 cut(s)	217, 339, 842
BmgT120I	GGNCC	7 cut(s)	217, 339, 487, 508, 524, 525, 842
BmiI	GGNNCC	2 cut(s)	526, 720
BmrFI	CCNGG	6 cut(s)	215, 523, 834, 1056, 1106, 1137
BmsI	GCATC	4 cut(s)	158, 775, 901, 1312
BpiI	GAAGAC	2 cut(s)	782, 986
Bpu10I	CCTNAGC	1 cut(s)	1151
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	5 cut(s)	215, 523, 834, 1106, 1137
BsaHI	GRCGYC	2 cut(s)	323, 363
BsaJI	CCNNGG	4 cut(s)	833, 1055, 1136, 1157
Bsc4I	CCNNNNNNNGG	4 cut(s)	839, 1137, 1295, 1296
Bse118I	RCCGGY	2 cut(s)	13, 396
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	4 cut(s)	833, 1055, 1136, 1157
BseGI	GGATG	7 cut(s)	87, 205, 561, 790, 916, 933, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	839, 1137, 1295, 1296
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	1142
BseRI	GAGGAG	6 cut(s)	54, 166, 169, 484, 917, 1261
BseSI	GKGCMC	1 cut(s)	528
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	57, 523, 670, 1158, 1287
BsgI	GTGCAG	1 cut(s)	1157
Bsh1236I	CGCG	2 cut(s)	255, 375
Bsh1285I	CGRYCG	2 cut(s)	360, 370
BshFI	GGCC	6 cut(s)	359, 488, 510, 526, 710, 1156
BsiEI	CGRYCG	2 cut(s)	360, 370
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	9 cut(s)	14, 28, 215, 397, 511, 522, 833, 1105, 1136
BslFI	GGGAC	2 cut(s)	185, 488
BslI	CCNNNNNNNGG	4 cut(s)	839, 1137, 1295, 1296
BsmAI	GTCTC	5 cut(s)	286, 333, 728, 845, 1243
BsmBI	CGTCTC	3 cut(s)	286, 333, 1243
BsmFI	GGGAC	2 cut(s)	185, 488
BsnI	GGCC	6 cut(s)	359, 488, 510, 526, 710, 1156
Bsp119I	TTCGAA	1 cut(s)	542
Bsp120I	GGGCCC	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	249, 528
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	5 cut(s)	421, 598, 621, 1006, 1111
BspANI	GGCC	6 cut(s)	359, 488, 510, 526, 710, 1156
BspCNI	CTCAG	1 cut(s)	1143
BspFNI	CGCG	2 cut(s)	255, 375
BspLI	GGNNCC	2 cut(s)	526, 720
BspPI	GGATC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	542
BspTI	CTTAAG	1 cut(s)	944
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	2 cut(s)	13, 396
BsrGI	TGTACA	1 cut(s)	882
BssAI	RCCGGY	2 cut(s)	13, 396
BssECI	CCNNGG	4 cut(s)	833, 1055, 1136, 1157
BssMI	GATC	5 cut(s)	421, 598, 621, 1006, 1111
BssNI	GRCGYC	2 cut(s)	323, 363
BssSI	CACGAG	2 cut(s)	1166, 1175
Bst2BI	CACGAG	2 cut(s)	1166, 1175
Bst2UI	CCWGG	1 cut(s)	1056
Bst6I	CTCTTC	3 cut(s)	64, 1232, 1238
BstACI	GRCGYC	2 cut(s)	323, 363
BstAFI	CTTAAG	1 cut(s)	944
BstAPI	GCANNNNNTGC	1 cut(s)	1171
BstAUI	TGTACA	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	398, 582
BstDEI	CTNAG	1 cut(s)	1151
BstF5I	GGATG	7 cut(s)	87, 205, 561, 790, 916, 933, 1048
BstFNI	CGCG	2 cut(s)	255, 375
BstHHI	GCGC	2 cut(s)	255, 377
BstKTI	GATC	5 cut(s)	424, 601, 624, 1009, 1114
BstMAI	GTCTC	5 cut(s)	286, 333, 728, 845, 1243
BstMBI	GATC	5 cut(s)	421, 598, 621, 1006, 1111
BstMCI	CGRYCG	2 cut(s)	360, 370
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 37, 683, 1147, 1162, 1171, 1177, 1207
BstNI	CCWGG	1 cut(s)	1056
BstSCI	CCNGG	6 cut(s)	213, 521, 832, 1054, 1104, 1135
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	2 cut(s)	255, 375
BstV1I	GCAGC	5 cut(s)	57, 523, 670, 1158, 1287
BstV2I	GAAGAC	2 cut(s)	782, 986
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	6 cut(s)	359, 488, 510, 526, 710, 1156
BtsCI	GGATG	7 cut(s)	87, 205, 561, 790, 916, 933, 1048
BtsIMutI	CAGTG	1 cut(s)	1231
Cac8I	GCNNGC	2 cut(s)	398, 582
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	2 cut(s)	255, 377
Cfr10I	RCCGGY	2 cut(s)	13, 396
Cfr13I	GGNCC	7 cut(s)	217, 339, 487, 508, 524, 525, 842
CseI	GACGC	3 cut(s)	278, 331, 371
Csp6I	GTAC	3 cut(s)	344, 616, 883
CviAII	CATG	2 cut(s)	491, 1010
CviQI	GTAC	3 cut(s)	344, 616, 883
DdeI	CTNAG	1 cut(s)	1151
DpnI	GATC	5 cut(s)	423, 600, 623, 1008, 1113
DpnII	GATC	5 cut(s)	421, 598, 621, 1006, 1111
EaeI	YGGCCR	2 cut(s)	357, 708
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	3 cut(s)	64, 1232, 1238
EarI	CTCTTC	3 cut(s)	64, 1232, 1238
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	249, 528
Eco47I	GGWCC	3 cut(s)	217, 339, 842
Eco52I	CGGCCG	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	2 cut(s)	249, 528
Esp3I	CGTCTC	3 cut(s)	286, 333, 1243
FaeI	CATG	2 cut(s)	494, 1013
FaiI	YATR	9 cut(s)	140, 492, 506, 603, 605, 818, 861, 1011, 1292
FaqI	GGGAC	2 cut(s)	185, 488
FatI	CATG	2 cut(s)	490, 1009
FauI	CCCGC	4 cut(s)	293, 317, 883, 931
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	3 cut(s)	598, 1006, 1111
FokI	GGATG	7 cut(s)	74, 192, 568, 797, 923, 940, 1055
FriOI	GRGCYC	2 cut(s)	249, 528
FspBI	CTAG	2 cut(s)	383, 990
GlaI	GCGC	2 cut(s)	254, 376
HaeIII	GGCC	6 cut(s)	359, 488, 510, 526, 710, 1156
HapII	CCGG	9 cut(s)	14, 28, 215, 397, 511, 522, 833, 1105, 1136
HgaI	GACGC	3 cut(s)	278, 331, 371
HhaI	GCGC	2 cut(s)	255, 377
Hin1I	GRCGYC	2 cut(s)	323, 363
Hin1II	CATG	2 cut(s)	494, 1013
Hin6I	GCGC	2 cut(s)	253, 375
HinP1I	GCGC	2 cut(s)	253, 375
HinfI	GANTC	5 cut(s)	263, 387, 436, 499, 1018
HpaII	CCGG	9 cut(s)	14, 28, 215, 397, 511, 522, 833, 1105, 1136
HphI	GGTGA	7 cut(s)	3, 152, 709, 1027, 1109, 1120, 1246
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	5 cut(s)	268, 321, 846, 972, 1316
Hpy188III	TCNNGA	5 cut(s)	406, 419, 625, 827, 1186
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	272, 325, 365
HpyAV	CCTTC	7 cut(s)	18, 181, 313, 655, 925, 1030, 1225
HpyCH4IV	ACGT	1 cut(s)	1252
HpyCH4V	TGCA	7 cut(s)	22, 788, 914, 1124, 1165, 1174, 1303
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 37, 683, 1147, 1162, 1171, 1177, 1207
HpyF3I	CTNAG	1 cut(s)	1151
HpySE526I	ACGT	1 cut(s)	1252
Hsp92I	GRCGYC	2 cut(s)	323, 363
Hsp92II	CATG	2 cut(s)	494, 1013
HspAI	GCGC	2 cut(s)	253, 375
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Ksp22I	TGATCA	3 cut(s)	598, 1006, 1111
Kzo9I	GATC	5 cut(s)	421, 598, 621, 1006, 1111
LmnI	GCTCC	5 cut(s)	45, 252, 277, 322, 876
Lsp1109I	GCAGC	5 cut(s)	57, 523, 670, 1158, 1287
LweI	GCATC	4 cut(s)	158, 775, 901, 1312
MaeI	CTAG	2 cut(s)	383, 990
MaeII	ACGT	1 cut(s)	1252
MalI	GATC	5 cut(s)	423, 600, 623, 1008, 1113
MboI	GATC	5 cut(s)	421, 598, 621, 1006, 1111
MboII	GAAGA	7 cut(s)	51, 787, 991, 1039, 1042, 1249, 1255
MhlI	GDGCHC	2 cut(s)	249, 528
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	5 cut(s)	124, 221, 378, 515, 647
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	257, 1027
MmeI	TCCRAC	2 cut(s)	291, 344
Mox20I	TGGCCA	1 cut(s)	710
Mph1103I	ATGCAT	1 cut(s)	790
MroNI	GCCGGC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	3 cut(s)	945, 1257, 1281
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	2 cut(s)	70, 536
MspCI	CTTAAG	1 cut(s)	944
MspI	CCGG	9 cut(s)	14, 28, 215, 397, 511, 522, 833, 1105, 1136
MspR9I	CCNGG	6 cut(s)	215, 523, 834, 1056, 1106, 1137
MvaI	CCWGG	1 cut(s)	1056
MvnI	CGCG	2 cut(s)	255, 375
MwoI	GCNNNNNNNGC	8 cut(s)	28, 37, 683, 1147, 1162, 1171, 1177, 1207
NaeI	GCCGGC	1 cut(s)	398
NciI	CCSGG	5 cut(s)	215, 523, 834, 1106, 1137
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	5 cut(s)	421, 598, 621, 1006, 1111
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	2 cut(s)	494, 1013
NlaIV	GGNNCC	2 cut(s)	526, 720
NmeAIII	GCCGAG	3 cut(s)	335, 712, 1182
NsiI	ATGCAT	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 426, 1173
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	387, 436, 499
PflFI	GACNNNGTC	2 cut(s)	325, 985
PleI	GAGTC	2 cut(s)	257, 1026
PpsI	GAGTC	2 cut(s)	257, 1026
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	1054
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	2 cut(s)	526, 720
PspOMI	GGGCCC	1 cut(s)	524
PspPI	GGNCC	7 cut(s)	217, 339, 487, 508, 524, 525, 842
PstNI	CAGNNNCTG	1 cut(s)	439
PsyI	GACNNNGTC	2 cut(s)	325, 985
RsaI	GTAC	3 cut(s)	345, 617, 884
RsaNI	GTAC	3 cut(s)	344, 616, 883
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	945, 1257, 1281
Sau3AI	GATC	5 cut(s)	421, 598, 621, 1006, 1111
Sau96I	GGNCC	7 cut(s)	217, 339, 487, 508, 524, 525, 842
SchI	GAGTC	2 cut(s)	257, 1027
ScrFI	CCNGG	6 cut(s)	215, 523, 834, 1056, 1106, 1137
SduI	GDGCHC	2 cut(s)	249, 528
SfaNI	GCATC	4 cut(s)	158, 775, 901, 1312
SfcI	CTRYAG	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	3 cut(s)	217, 339, 842
SmlI	CTYRAG	2 cut(s)	920, 944
SmoI	CTYRAG	2 cut(s)	920, 944
Sse9I	AATT	5 cut(s)	124, 221, 378, 515, 647
SspMI	CTAG	2 cut(s)	383, 990
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	6 cut(s)	213, 521, 832, 1054, 1104, 1135
TaiI	ACGT	1 cut(s)	1255
TaqI	TCGA	7 cut(s)	299, 348, 407, 420, 542, 549, 1306
TasI	AATT	5 cut(s)	124, 221, 378, 515, 647
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	5 cut(s)	76, 291, 375, 488, 938
TfiI	GAWTC	3 cut(s)	387, 436, 499
Tru1I	TTAA	3 cut(s)	945, 1257, 1281
Tru9I	TTAA	3 cut(s)	945, 1257, 1281
TscAI	CASTG	1 cut(s)	1231
TseI	GCWGC	5 cut(s)	70, 536, 683, 1171, 1300
TspDTI	ATGAA	2 cut(s)	944, 1049
TspGWI	ACGGA	3 cut(s)	268, 331, 794
TspRI	CASTG	1 cut(s)	1231
Tth111I	GACNNNGTC	2 cut(s)	325, 985
Vha464I	CTTAAG	1 cut(s)	944
VpaK11BI	GGWCC	3 cut(s)	217, 339, 842
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	2 cut(s)	383, 990
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.