Rw7G004810

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
3984276 .. 3985721
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004810.1

Sequence Viewer

Length: 1317 bp
ATGCGACCTTTACCTGCTCTGCAACTCCGGCGACTTCTGCTCCGCCACCTATCAACCTCTTCTCCTCCGCTGCCGCTTCAAACCCACATCCCATTTCCCTCAAACAAACCCACCCATTTCCACAATTCCCAACCCACCATAAGCACCGCATCAATCTCTCACCCCAAACCCTTCTCCTCCTCCATCTCAACCCGACCCGTCCCACATCCCAACCCGGCCCAATTAGCCCACTCCCTTTCCACCGAGCTCCTGCGCGACCCCGACTCCGACGCTCCCTCCGTCTCCCGCCGCCTCCAATCGACCTTCCCCCGCTTCGCTCCGACGCCGTCTCTGGTCCGGTCCGTACTCGACCTCTCGGCCGACGCCGACCGCCGCGCAATTCTAGGATTCTACAGCCGGCTCATCTCGAATAACAATCTCGATCACGGCGACCAGATTCTGTCGTTTTTCGTGGACTATTTCGGGCAGCGGAGGGACTTCAAGGCGGCCCATGATGTGATTCGTATGGGCCGGAAATTCGCCGGGCCCAAAACCGCTGCTTCGAACTTTGATGGGATGGTTAGAGCAGGGAGGGTTTCGCAGGCTGTTGCTTTTTTTGATCATATGGACATTGAGTATGGGATCAAGAGGGAGAGAGGAGCTGTCAAATTGGCGGTGGAGAAGGTCTGCGAAAATGCTTTTGCAGCCGAGAGAATGGTGAGGCGGTTGGCCAATGAGGTTCCCAAAAATGTGGAGACTTGGAATGTGGTGGTTAGTTGCTTGTGTAAGATTAGGAAGACGGAGGATGCATTGAAGTTGTTTCACAGAATGTGTGGTATGGGGGGTCGTGAGCCGGGGTTTGGTCCGAATGAGACTACTTATGTTGTGTTGGTTAGGAGCTTGTACAAGGCGGGGAGGATTGAGGAGGGAGATGCAATGCTTGAGAGGATGAAGGCGGCGGGGCTGAAGGTTGATAACAGGGTTTATTATCGGATTTTGAAGACATTGTCCAGTGTTGGGAAGTTTGATCATGCGGTGAGTCTTGTGAAGAAGATGAAGGAGGATGGGTGTGAGCCTGGGGTCAAGGTTTATCTGCTGATGATGGATAAGTTGAGTGGTGATTACCGGGTTGATAAAGCGGTTGCACTCACCAAGCCGGGGCAGTTGAAGCTGAGGCCGAGGTTGCACGAGCTGCACGAGCCTTTCAAGAGGAAGCAGAAGCCTGTGAAGCACAAGGAAACAATCAGTGAGAAGGTGAAGAGGAAGAGGAGACGTATTAAGCAAGTAAGGTTGCTATTTGTTAAGAAGCCCATAAGAGGGCTGCATCGACCCTTCTGA

Protein Analysis

438

Amino Acids

49.66

Weight (kDa)

10.32

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 242 - 296 1.2e-07 PPR repeat family
PPR PF01535 246 - 274 3e-06 PPR repeat
PPR_3 PF13812 307 - 359 8.8e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016848)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccII CGCG 2 cut(s) 255, 375
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 2 cut(s) 357, 708
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 965
AcyI GRCGYC 2 cut(s) 323, 363
AfaI GTAC 2 cut(s) 345, 884
AfiI CCNNNNNNNGG 5 cut(s) 839, 996, 1137, 1295, 1296
AgsI TTSAA 6 cut(s) 80, 481, 793, 979, 1147, 1186
AjnI CCWGG 1 cut(s) 1054
AluBI AGCT 5 cut(s) 247, 641, 879, 1150, 1171
AluI AGCT 5 cut(s) 247, 641, 879, 1150, 1171
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 5 cut(s) 286, 333, 728, 845, 1243
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 7 cut(s) 216, 357, 486, 508, 524, 708, 1154
ApaI GGGCCC 1 cut(s) 528
ApeKI GCWGC 6 cut(s) 70, 466, 536, 683, 1171, 1300
ApoI RAATTY 1 cut(s) 515
AspLEI GCGC 2 cut(s) 255, 377
AspS9I GGNCC 8 cut(s) 217, 334, 339, 487, 508, 524, 525, 842
AsuC2I CCSGG 5 cut(s) 215, 523, 834, 1106, 1137
AsuHPI GGTGA 6 cut(s) 152, 709, 1027, 1109, 1120, 1246
AsuII TTCGAA 1 cut(s) 542
AvaII GGWCC 3 cut(s) 334, 339, 842
BaeGI GKGCMC 1 cut(s) 528
BalI TGGCCA 1 cut(s) 710
BanII GRGCYC 2 cut(s) 249, 528
BauI CACGAG 2 cut(s) 1166, 1175
BbsI GAAGAC 2 cut(s) 782, 986
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 1151
BbvI GCAGC 6 cut(s) 57, 478, 523, 695, 1158, 1287
BccI CCATC 5 cut(s) 191, 545, 550, 1037, 1075
BceAI ACGGC 2 cut(s) 310, 442
BciT130I CCWGG 1 cut(s) 1056
BclI TGATCA 2 cut(s) 598, 1006
BcnI CCSGG 5 cut(s) 215, 523, 834, 1106, 1137
BcoDI GTCTC 5 cut(s) 286, 333, 728, 845, 1243
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 22
Bme1390I CCNGG 6 cut(s) 215, 523, 834, 1056, 1106, 1137
Bme18I GGWCC 3 cut(s) 334, 339, 842
BmgT120I GGNCC 8 cut(s) 217, 334, 339, 487, 508, 524, 525, 842
BmiI GGNNCC 2 cut(s) 526, 720
BmrFI CCNGG 6 cut(s) 215, 523, 834, 1056, 1106, 1137
BmsI GCATC 4 cut(s) 158, 775, 901, 1312
BpiI GAAGAC 2 cut(s) 782, 986
Bpu10I CCTNAGC 1 cut(s) 1151
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 5 cut(s) 215, 523, 834, 1106, 1137
BsaHI GRCGYC 2 cut(s) 323, 363
BsaJI CCNNGG 4 cut(s) 833, 1055, 1136, 1157
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 5 cut(s) 839, 996, 1137, 1295, 1296
Bse118I RCCGGY 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 921
BseBI CCWGG 1 cut(s) 1056
BseDI CCNNGG 4 cut(s) 833, 1055, 1136, 1157
BseGI GGATG 6 cut(s) 87, 205, 561, 790, 933, 1048
BseLI CCNNNNNNNGG 5 cut(s) 839, 996, 1137, 1295, 1296
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 1142
BseNI ACTGG 1 cut(s) 990
BseRI GAGGAG 6 cut(s) 54, 166, 169, 651, 917, 1261
BseSI GKGCMC 1 cut(s) 528
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 6 cut(s) 57, 478, 523, 695, 1158, 1287
BsgI GTGCAG 1 cut(s) 1157
Bsh1236I CGCG 2 cut(s) 255, 375
Bsh1285I CGRYCG 2 cut(s) 360, 370
BshFI GGCC 7 cut(s) 218, 359, 488, 510, 526, 710, 1156
BsiEI CGRYCG 2 cut(s) 360, 370
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 9 cut(s) 28, 215, 337, 397, 511, 522, 833, 1105, 1136
BslFI GGGAC 2 cut(s) 185, 488
BslI CCNNNNNNNGG 5 cut(s) 839, 996, 1137, 1295, 1296
BsmAI GTCTC 5 cut(s) 286, 333, 728, 845, 1243
BsmBI CGTCTC 3 cut(s) 286, 333, 1243
BsmFI GGGAC 2 cut(s) 185, 488
BsnI GGCC 7 cut(s) 218, 359, 488, 510, 526, 710, 1156
Bsp119I TTCGAA 1 cut(s) 542
Bsp120I GGGCCC 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 249, 528
Bsp1407I TGTACA 1 cut(s) 882
Bsp143I GATC 4 cut(s) 421, 598, 621, 1006
BspANI GGCC 7 cut(s) 218, 359, 488, 510, 526, 710, 1156
BspCNI CTCAG 1 cut(s) 1143
BspFNI CGCG 2 cut(s) 255, 375
BspLI GGNNCC 2 cut(s) 526, 720
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 629
BspT104I TTCGAA 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 882
BsrI ACTGG 1 cut(s) 990
BssAI RCCGGY 1 cut(s) 396
BssECI CCNNGG 4 cut(s) 833, 1055, 1136, 1157
BssMI GATC 4 cut(s) 421, 598, 621, 1006
BssNI GRCGYC 2 cut(s) 323, 363
BssSI CACGAG 2 cut(s) 1166, 1175
Bst2BI CACGAG 2 cut(s) 1166, 1175
Bst2UI CCWGG 1 cut(s) 1056
Bst6I CTCTTC 3 cut(s) 64, 1232, 1238
BstACI GRCGYC 2 cut(s) 323, 363
BstAPI GCANNNNNTGC 1 cut(s) 1171
BstAUI TGTACA 1 cut(s) 882
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 398, 582
BstDEI CTNAG 1 cut(s) 1151
BstF5I GGATG 6 cut(s) 87, 205, 561, 790, 933, 1048
BstFNI CGCG 2 cut(s) 255, 375
BstHHI GCGC 2 cut(s) 255, 377
BstKTI GATC 4 cut(s) 424, 601, 624, 1009
BstMAI GTCTC 5 cut(s) 286, 333, 728, 845, 1243
BstMBI GATC 4 cut(s) 421, 598, 621, 1006
BstMCI CGRYCG 2 cut(s) 360, 370
BstMWI GCNNNNNNNGC 9 cut(s) 28, 37, 224, 683, 1147, 1162, 1171, 1177, 1207
BstNI CCWGG 1 cut(s) 1056
BstSCI CCNGG 6 cut(s) 213, 521, 832, 1054, 1104, 1135
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 528
BstUI CGCG 2 cut(s) 255, 375
BstV1I GCAGC 6 cut(s) 57, 478, 523, 695, 1158, 1287
BstV2I GAAGAC 2 cut(s) 782, 986
BstXI CCANNNNNNTGG 1 cut(s) 730
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 7 cut(s) 218, 359, 488, 510, 526, 710, 1156
BtsCI GGATG 6 cut(s) 87, 205, 561, 790, 933, 1048
BtsIMutI CAGTG 2 cut(s) 997, 1231
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 398, 582
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 2 cut(s) 255, 377
Cfr10I RCCGGY 1 cut(s) 396
Cfr13I GGNCC 8 cut(s) 217, 334, 339, 487, 508, 524, 525, 842
CpoI CGGWCCG 1 cut(s) 339
CseI GACGC 3 cut(s) 278, 331, 371
Csp6I GTAC 2 cut(s) 344, 883
CspI CGGWCCG 1 cut(s) 339
CviAII CATG 2 cut(s) 491, 1010
CviQI GTAC 2 cut(s) 344, 883
DdeI CTNAG 1 cut(s) 1151
DpnI GATC 4 cut(s) 423, 600, 623, 1008
DpnII GATC 4 cut(s) 421, 598, 621, 1006
EaeI YGGCCR 2 cut(s) 357, 708
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 3 cut(s) 64, 1232, 1238
EarI CTCTTC 3 cut(s) 64, 1232, 1238
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 249, 528
Eco47I GGWCC 3 cut(s) 334, 339, 842
Eco52I CGGCCG 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 1054
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 249, 528
Esp3I CGTCTC 3 cut(s) 286, 333, 1243
FaeI CATG 2 cut(s) 494, 1013
FaqI GGGAC 2 cut(s) 185, 488
FatI CATG 2 cut(s) 490, 1009
FauI CCCGC 4 cut(s) 293, 317, 883, 931
FauNDI CATATG 1 cut(s) 603
FbaI TGATCA 2 cut(s) 598, 1006
FokI GGATG 6 cut(s) 74, 192, 568, 797, 940, 1055
FriOI GRGCYC 2 cut(s) 249, 528
FspBI CTAG 1 cut(s) 383
GlaI GCGC 2 cut(s) 254, 376
HaeIII GGCC 7 cut(s) 218, 359, 488, 510, 526, 710, 1156
HapII CCGG 9 cut(s) 28, 215, 337, 397, 511, 522, 833, 1105, 1136
HgaI GACGC 3 cut(s) 278, 331, 371
HhaI GCGC 2 cut(s) 255, 377
Hin1I GRCGYC 2 cut(s) 323, 363
Hin1II CATG 2 cut(s) 494, 1013
Hin6I GCGC 2 cut(s) 253, 375
HinP1I GCGC 2 cut(s) 253, 375
HinfI GANTC 5 cut(s) 263, 387, 436, 499, 1018
HpaII CCGG 9 cut(s) 28, 215, 337, 397, 511, 522, 833, 1105, 1136
HphI GGTGA 6 cut(s) 152, 709, 1027, 1109, 1120, 1246
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 5 cut(s) 268, 321, 846, 972, 1316
Hpy188III TCNNGA 5 cut(s) 406, 419, 625, 827, 1186
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 3 cut(s) 272, 325, 365
HpyAV CCTTC 7 cut(s) 181, 313, 655, 925, 940, 1030, 1225
HpyCH4IV ACGT 1 cut(s) 1252
HpyCH4V TGCA 8 cut(s) 22, 683, 788, 914, 1124, 1165, 1174, 1303
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 37, 224, 683, 1147, 1162, 1171, 1177, 1207
HpyF3I CTNAG 1 cut(s) 1151
HpySE526I ACGT 1 cut(s) 1252
Hsp92I GRCGYC 2 cut(s) 323, 363
Hsp92II CATG 2 cut(s) 494, 1013
HspAI GCGC 2 cut(s) 253, 375
KroI GCCGGC 1 cut(s) 396
KroNI GCCGGC 1 cut(s) 398
Ksp22I TGATCA 2 cut(s) 598, 1006
Kzo9I GATC 4 cut(s) 421, 598, 621, 1006
LmnI GCTCC 6 cut(s) 45, 252, 277, 322, 638, 876
Lsp1109I GCAGC 6 cut(s) 57, 478, 523, 695, 1158, 1287
LweI GCATC 4 cut(s) 158, 775, 901, 1312
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 1252
MalI GATC 4 cut(s) 423, 600, 623, 1008
MboI GATC 4 cut(s) 421, 598, 621, 1006
MboII GAAGA 7 cut(s) 51, 787, 991, 1039, 1042, 1249, 1255
MhlI GDGCHC 2 cut(s) 249, 528
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 5 cut(s) 124, 221, 378, 515, 647
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 2 cut(s) 257, 1027
MmeI TCCRAC 2 cut(s) 291, 344
Mox20I TGGCCA 1 cut(s) 710
Mph1103I ATGCAT 1 cut(s) 790
MroNI GCCGGC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 710
MseI TTAA 2 cut(s) 1257, 1281
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 3 cut(s) 70, 469, 536
MspI CCGG 9 cut(s) 28, 215, 337, 397, 511, 522, 833, 1105, 1136
MspR9I CCNGG 6 cut(s) 215, 523, 834, 1056, 1106, 1137
MvaI CCWGG 1 cut(s) 1056
MvnI CGCG 2 cut(s) 255, 375
MwoI GCNNNNNNNGC 9 cut(s) 28, 37, 224, 683, 1147, 1162, 1171, 1177, 1207
NaeI GCCGGC 1 cut(s) 398
NciI CCSGG 5 cut(s) 215, 523, 834, 1106, 1137
NdeI CATATG 1 cut(s) 603
NdeII GATC 4 cut(s) 421, 598, 621, 1006
NgoMIV GCCGGC 1 cut(s) 396
NlaIII CATG 2 cut(s) 494, 1013
NlaIV GGNNCC 2 cut(s) 526, 720
NmeAIII GCCGAG 3 cut(s) 335, 712, 1182
NsiI ATGCAT 1 cut(s) 790
NspV TTCGAA 1 cut(s) 542
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 426, 1173
PdiI GCCGGC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 387, 436, 499
PflFI GACNNNGTC 2 cut(s) 325, 985
PleI GAGTC 2 cut(s) 257, 1026
PpsI GAGTC 2 cut(s) 257, 1026
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 1054
PspGI CCWGG 1 cut(s) 1054
PspN4I GGNNCC 2 cut(s) 526, 720
PspOMI GGGCCC 1 cut(s) 524
PspPI GGNCC 8 cut(s) 217, 334, 339, 487, 508, 524, 525, 842
PstNI CAGNNNCTG 1 cut(s) 439
PsyI GACNNNGTC 2 cut(s) 325, 985
RsaI GTAC 2 cut(s) 345, 884
RsaNI GTAC 2 cut(s) 344, 883
Rsr2I CGGWCCG 1 cut(s) 339
RsrII CGGWCCG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 1257, 1281
Sau3AI GATC 4 cut(s) 421, 598, 621, 1006
Sau96I GGNCC 8 cut(s) 217, 334, 339, 487, 508, 524, 525, 842
SchI GAGTC 2 cut(s) 257, 1027
ScrFI CCNGG 6 cut(s) 215, 523, 834, 1056, 1106, 1137
SduI GDGCHC 2 cut(s) 249, 528
SfaNI GCATC 4 cut(s) 158, 775, 901, 1312
SfcI CTRYAG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 3 cut(s) 334, 339, 842
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 5 cut(s) 124, 221, 378, 515, 647
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 6 cut(s) 213, 521, 832, 1054, 1104, 1135
TaiI ACGT 1 cut(s) 1255
TaqI TCGA 6 cut(s) 299, 348, 407, 420, 542, 1306
TasI AATT 5 cut(s) 124, 221, 378, 515, 647
TatI WGTACW 1 cut(s) 882
TauI GCSGC 5 cut(s) 76, 291, 375, 488, 938
TfiI GAWTC 3 cut(s) 387, 436, 499
Tru1I TTAA 2 cut(s) 1257, 1281
Tru9I TTAA 2 cut(s) 1257, 1281
TscAI CASTG 2 cut(s) 997, 1231
TseI GCWGC 6 cut(s) 70, 466, 536, 683, 1171, 1300
TspDTI ATGAA 2 cut(s) 944, 1049
TspGWI ACGGA 3 cut(s) 268, 331, 794
TspRI CASTG 2 cut(s) 997, 1231
Tth111I GACNNNGTC 2 cut(s) 325, 985
VpaK11BI GGWCC 3 cut(s) 334, 339, 842
XapI RAATTY 1 cut(s) 515
XspI CTAG 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.