Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007887.1

Orthogroup ID

OG0016848

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 336

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 335 bp

atgcgaccttcaccggctctgcaactccggcgacttctgctccgccacctctcaacctcttctcctccgctgccgcttcaaacccacatcccatttccctcaaacaaacccacccatttccacaattcccaacccaccataaccaccgcatcaatctctcaccccaaacccttctcctcctccatctcaacccgacccgtcccacatcccaacccggaccaattagcccactccctctccaccgagctcctgcgcgaccccgactccgacgctccctccgtctcccgccgcctccaatcgaccttcccccgcttcgctccgacgccgtctctggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

11.71

Isoelectric Point (pI)

93.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13580
pyrus_communis	pycom06g18150
rosa_chinensis	RchiOBHm_Chr7g0183361
rosa_laevigata	RLG00000005053
rosa_multiflora	Rmu_co8151760.1_g000001 Rmu_sc0000951.1_g000014 Rmu_sc0007887.1_g000001 Rmu_sc0008602.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270510
rosa_rugosa	Rorug06G0457100
rosa_samantha	Rh7BG058500 Rh7CG060100 Rh7DG058200
rosa_wichuraiana	Rw7G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	7 cut(s)	43, 68, 74, 147, 286, 289, 310
AcyI	GRCGYC	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	3, 152
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	71, 74, 289
BlsI	GCNGC	3 cut(s)	72, 75, 290
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	323
Bse118I	RCCGGY	1 cut(s)	13
BseGI	GGATG	2 cut(s)	87, 205
BseRI	GAGGAG	3 cut(s)	54, 166, 169
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	14, 28, 215
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	7 cut(s)	43, 68, 74, 147, 286, 289, 310
BspFNI	CGCG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	87, 205
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	87, 205
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	278
CviJI	RGCY	3 cut(s)	17, 227, 247
CviKI_1	RGCY	3 cut(s)	17, 227, 247
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	286
FaiI	YATR	1 cut(s)	140
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	2 cut(s)	293, 317
Fnu4HI	GCNGC	3 cut(s)	71, 74, 289
FokI	GGATG	2 cut(s)	74, 192
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	71, 74, 289
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	71, 74, 289
HapII	CCGG	3 cut(s)	14, 28, 215
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	3 cut(s)	14, 28, 215
HphI	GGTGA	2 cut(s)	3, 152
Hpy188I	TCNGA	2 cut(s)	268, 321
Hpy99I	CGWCG	2 cut(s)	272, 325
HpyAV	CCTTC	3 cut(s)	18, 181, 313
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	1 cut(s)	253
LmnI	GCTCC	4 cut(s)	45, 252, 277, 322
LpnPI	CCDG	5 cut(s)	27, 41, 228, 263, 317
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	124, 221
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	59, 67, 75, 109, 187, 190, 245, 286, 302
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	3 cut(s)	14, 28, 215
MspR9I	CCNGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NciI	CCSGG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	72, 75, 290
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	217
PsyI	GACNNNGTC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	3 cut(s)	71, 74, 289
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	5 cut(s)	10, 51, 59, 249, 305
SfaNI	GCATC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	2 cut(s)	124, 221
SsiI	CCGC	7 cut(s)	43, 68, 74, 147, 286, 289, 310
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	124, 221
TauI	GCSGC	2 cut(s)	76, 291
TseI	GCWGC	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.