Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g13580 |
| pyrus_communis | pycom06g18150 |
| rosa_chinensis | RchiOBHm_Chr7g0183361 |
| rosa_laevigata | RLG00000005053 |
| rosa_multiflora | Rmu_co8151760.1_g000001 Rmu_sc0000951.1_g000014 Rmu_sc0007887.1_g000001 Rmu_sc0008602.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00270510 |
| rosa_rugosa | Rorug06G0457100 |
| rosa_samantha | Rh7BG058500 Rh7CG060100 Rh7DG058200 |
| rosa_wichuraiana | Rw7G004810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 385 |
| AciI | CCGC | 5 cut(s) | 232, 244, 348, 360, 423 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 304 |
| AgsI | TTSAA | 2 cut(s) | 42, 89 |
| AjnI | CCWGG | 1 cut(s) | 486 |
| AluBI | AGCT | 5 cut(s) | 30, 258, 369, 481, 498 |
| AluI | AGCT | 5 cut(s) | 30, 258, 369, 481, 498 |
| Alw21I | GWGCWC | 2 cut(s) | 145, 483 |
| Alw26I | GTCTC | 3 cut(s) | 12, 222, 471 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 220 |
| AoxI | GGCC | 1 cut(s) | 206 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AspS9I | GGNCC | 1 cut(s) | 490 |
| AsuC2I | CCSGG | 1 cut(s) | 305 |
| AvaII | GGWCC | 1 cut(s) | 490 |
| BanII | GRGCYC | 2 cut(s) | 132, 483 |
| BbsI | GAAGAC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 2 cut(s) | 145, 483 |
| BceAI | ACGGC | 1 cut(s) | 256 |
| BciT130I | CCWGG | 1 cut(s) | 488 |
| BcnI | CCSGG | 1 cut(s) | 305 |
| BcoDI | GTCTC | 3 cut(s) | 12, 222, 471 |
| BisI | GCNGC | 1 cut(s) | 233 |
| BlsI | GCNGC | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 2 cut(s) | 305, 488 |
| Bme18I | GGWCC | 1 cut(s) | 490 |
| BmgT120I | GGNCC | 1 cut(s) | 490 |
| BmiI | GGNNCC | 1 cut(s) | 492 |
| BmrFI | CCNGG | 2 cut(s) | 305, 488 |
| BmsI | GCATC | 1 cut(s) | 430 |
| BpiI | GAAGAC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 2 cut(s) | 238, 470 |
| Bpu10I | CCTNAGC | 1 cut(s) | 126 |
| BpuMI | CCSGG | 1 cut(s) | 305 |
| BsaBI | GATNNNNATC | 1 cut(s) | 444 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 482, 512 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 304 |
| Bse8I | GATNNNNATC | 1 cut(s) | 444 |
| BseBI | CCWGG | 1 cut(s) | 488 |
| BseGI | GGATG | 2 cut(s) | 121, 300 |
| BseJI | GATNNNNATC | 1 cut(s) | 444 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 304 |
| BseMII | CTCAG | 2 cut(s) | 117, 476 |
| BseRI | GAGGAG | 3 cut(s) | 230, 463, 473 |
| BseYI | CCCAGC | 1 cut(s) | 494 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 2 cut(s) | 145, 483 |
| BsiSI | CCGG | 2 cut(s) | 229, 305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 304 |
| BsmAI | GTCTC | 3 cut(s) | 12, 222, 471 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 3 cut(s) | 132, 145, 483 |
| Bsp143I | GATC | 2 cut(s) | 178, 445 |
| BspACI | CCGC | 5 cut(s) | 232, 244, 348, 360, 423 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 2 cut(s) | 118, 475 |
| BspLI | GGNNCC | 1 cut(s) | 492 |
| BssMI | GATC | 2 cut(s) | 178, 445 |
| Bst2UI | CCWGG | 1 cut(s) | 488 |
| Bst4CI | ACNGT | 2 cut(s) | 176, 216 |
| BstDEI | CTNAG | 3 cut(s) | 126, 146, 462 |
| BstF5I | GGATG | 2 cut(s) | 121, 300 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 2 cut(s) | 181, 448 |
| BstMAI | GTCTC | 3 cut(s) | 12, 222, 471 |
| BstMBI | GATC | 2 cut(s) | 178, 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 1 cut(s) | 488 |
| BstSCI | CCNGG | 2 cut(s) | 303, 486 |
| BstV2I | GAAGAC | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtgZI | GCGATG | 1 cut(s) | 252 |
| BtsCI | GGATG | 2 cut(s) | 121, 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 220 |
| CfoI | GCGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 1 cut(s) | 490 |
| CviJI | RGCY | 9 cut(s) | 30, 130, 208, 235, 258, 369, 461, 481, 498 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 130, 208, 235, 258, 369, 461, 481, 498 |
| DdeI | CTNAG | 3 cut(s) | 126, 146, 462 |
| DpnI | GATC | 2 cut(s) | 180, 447 |
| DpnII | GATC | 2 cut(s) | 178, 445 |
| EciI | GGCGGA | 1 cut(s) | 412 |
| Ecl136II | GAGCTC | 1 cut(s) | 481 |
| Eco24I | GRGCYC | 2 cut(s) | 132, 483 |
| Eco47I | GGWCC | 1 cut(s) | 490 |
| Eco53kI | GAGCTC | 1 cut(s) | 481 |
| EcoICRI | GAGCTC | 1 cut(s) | 481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 490 |
| EcoRII | CCWGG | 1 cut(s) | 486 |
| EcoT38I | GRGCYC | 2 cut(s) | 132, 483 |
| FaiI | YATR | 1 cut(s) | 353 |
| FauI | CCCGC | 1 cut(s) | 355 |
| FblI | GTMKAC | 1 cut(s) | 385 |
| Fnu4HI | GCNGC | 1 cut(s) | 233 |
| FokI | GGATG | 2 cut(s) | 108, 287 |
| FriOI | GRGCYC | 2 cut(s) | 132, 483 |
| Fsp4HI | GCNGC | 1 cut(s) | 233 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 1 cut(s) | 233 |
| GsaI | CCCAGC | 1 cut(s) | 498 |
| GsuI | CTGGAG | 2 cut(s) | 238, 470 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HapII | CCGG | 2 cut(s) | 229, 305 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HpaII | CCGG | 2 cut(s) | 229, 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 386 |
| Hpy188I | TCNGA | 3 cut(s) | 454, 478, 502 |
| Hpy188III | TCNNGA | 1 cut(s) | 125 |
| Hpy8I | GTNNAC | 1 cut(s) | 386 |
| Hpy99I | CGWCG | 1 cut(s) | 277 |
| HpyAV | CCTTC | 1 cut(s) | 421 |
| HpyCH4III | ACNGT | 2 cut(s) | 176, 216 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 66, 223, 443 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 3 cut(s) | 126, 146, 462 |
| HspAI | GCGC | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 178, 445 |
| LmnI | GCTCC | 5 cut(s) | 140, 263, 374, 486, 503 |
| LpnPI | CCDG | 8 cut(s) | 138, 178, 242, 268, 318, 473, 500, 508 |
| LweI | GCATC | 1 cut(s) | 430 |
| MaeIII | GTNAC | 1 cut(s) | 70 |
| MalI | GATC | 2 cut(s) | 180, 447 |
| MboI | GATC | 2 cut(s) | 178, 445 |
| MboII | GAAGA | 3 cut(s) | 126, 173, 270 |
| MhlI | GDGCHC | 3 cut(s) | 132, 145, 483 |
| MluCI | AATT | 2 cut(s) | 47, 455 |
| MnlI | CCTC | 3 cut(s) | 251, 484, 494 |
| MseI | TTAA | 1 cut(s) | 50 |
| MspI | CCGG | 2 cut(s) | 229, 305 |
| MspR9I | CCNGG | 2 cut(s) | 305, 488 |
| MvaI | CCWGG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NciI | CCSGG | 1 cut(s) | 305 |
| NdeII | GATC | 2 cut(s) | 178, 445 |
| NlaIV | GGNNCC | 1 cut(s) | 492 |
| PfoI | TCCNGGA | 1 cut(s) | 486 |
| PkrI | GCNGC | 1 cut(s) | 234 |
| PpuMI | RGGWCCY | 1 cut(s) | 490 |
| Psp124BI | GAGCTC | 1 cut(s) | 483 |
| Psp5II | RGGWCCY | 1 cut(s) | 490 |
| Psp6I | CCWGG | 1 cut(s) | 486 |
| PspFI | CCCAGC | 1 cut(s) | 494 |
| PspGI | CCWGG | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 1 cut(s) | 492 |
| PspPI | GGNCC | 1 cut(s) | 490 |
| PspPPI | RGGWCCY | 1 cut(s) | 490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 220 |
| SacI | GAGCTC | 1 cut(s) | 483 |
| SaqAI | TTAA | 1 cut(s) | 50 |
| SatI | GCNGC | 1 cut(s) | 233 |
| Sau3AI | GATC | 2 cut(s) | 178, 445 |
| Sau96I | GGNCC | 1 cut(s) | 490 |
| ScrFI | CCNGG | 2 cut(s) | 305, 488 |
| SduI | GDGCHC | 3 cut(s) | 132, 145, 483 |
| SetI | ASST | 5 cut(s) | 32, 260, 371, 483, 500 |
| SfaNI | GCATC | 1 cut(s) | 430 |
| SinI | GGWCC | 1 cut(s) | 490 |
| Sse9I | AATT | 2 cut(s) | 47, 455 |
| SsiI | CCGC | 5 cut(s) | 232, 244, 348, 360, 423 |
| SstI | GAGCTC | 1 cut(s) | 483 |
| StyD4I | CCNGG | 2 cut(s) | 303, 486 |
| TaaI | ACNGT | 2 cut(s) | 176, 216 |
| TasI | AATT | 2 cut(s) | 47, 455 |
| TauI | GCSGC | 1 cut(s) | 235 |
| Tru1I | TTAA | 1 cut(s) | 50 |
| Tru9I | TTAA | 1 cut(s) | 50 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| TspGWI | ACGGA | 1 cut(s) | 501 |
| TspRI | CASTG | 1 cut(s) | 181 |
| VpaK11BI | GGWCC | 1 cut(s) | 490 |
| XmiI | GTMKAC | 1 cut(s) | 385 |