FvH4_5g13880

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7828716 .. 7830865
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13880.t1

Sequence Viewer

Length: 1683 bp
ATGGTGAAGTCCAACCAGAAGCACTTTGTCGACTACTACGTGCTCTTAGGCTTCCAACCCGAAGACCTCGAAGCCATCCTCGACCCCGAGGAAGCAGAGCGCTATGTCGAAAAGGCTTACAAAGAAACGGCGAGGAGAATCCACCCGGACAAGGTCAAAGTCGCCGGCCTCCCCGAAGCCGAAGCCACCGCGAAAAAAGAAGAAGCCACCGCAAACTTCCAAGAGCTCCAAAAGGCCTACGAGATCATGAAAAACCCATGGATGCGAGCCGAGTATGACAAGACGCGCAAGAAAAACTCCACCCCGGAAAGCTTCAAACCCGGCCTAGTCCCCTCCGAAGGCCTCAGATTCTCCGGCTACTCCGACGAGGGCAAGGGATTCTTCAAGGTCTACGGCGACGTTTTTGAAAACATATACGCCAACGAGGTTGCGTTTCAAGAGATGAAGGAGCTGCCAAAGGACTCGGAGAAGGTGGTGAAGCGACTGAAGCCTCCTCCGGAGATAGGGGACGAGCATAGCCCTTATGCGGCGGTGGTGCAGTTCTATAATTTCTGGCTTAACTTCACGACGGTAATGGACTTCACGTGGATGGAGCCGCATGATGACTTGTCGGAGGCGCCGACGAAGAAGGGAGCGGCGGTGATGCAGCGGAAGAACGTGAAGGCGAGGAAGAAGGGGAGGAATGAGTATAATAATAAAGTGAGGAGGTTGGCGCAGTATGTAAGGAGGAGGGACATTAGGGTTTTGGAGATGATGGCGAAGAGGGAGGAGGAGAGGAAGAGGGAGGTGGAGGAGGAGAAGGAGAGGAGGAGGAAGTTGAAGAAGGAGAAGATGGAGAAGGCTTTGGAGTATGAGGAGCCGGAGTGGACGAAGCCGGTGGAGAGGAAGAGGAAGTATGGTGTGGAGGAGAAGGAGGAGGAGGAGAGGGAGGAGTGGGAGTGTGTGGTGTGTAGGAAGGAGTTCAAGAGCGAGAAGCAGTGCTTGAATCATCAGATGTCGAAGAAGCATAGGGAGATGGTAGCAATGTTGATGGGGTTGAAGAACAAGGATTTGGTTCAGGACGTGTTGGAGTTGATGGAGGAGGAGGATGAGCTTGATGATGATCATGTTGATGAGCTTTTGGAGGGAGAAGCTGAAGAAGAGAGTGAAGAAGAGGTTTGCGAATGCGTTGATGAAAATCTAGAGCAAAAAGGTGGTGAAGAAGTCGATAATGATGAAGTGGAAGAGGCGGAGGAGGAGGAGGAGGAGGAGAATGAGATGGATGTGCTAGAGGCAATGGTGGCTAGGCGAAAGACTAATGTAAGAGTTGGTGAACCAATTTTTGAGCCGATGGCGACCATTATTGATGTAGAGGAGGATGAGGTGGAGCATGAGGAGACAAAGAAGAGGGATGAGAGTGCAGAGAAGAAACCGAGGAGGAGGAGGAGTGTGAAGAGTGGTGGAATCAATGAACATGATGATAAGAAGAAATCGAAACCGGATTCCGGTGAGGAATCTTGCGTCGACAATGGGAGTGAAGATGAGCAGAAGAGAAAGAAGGGAGGGAAGAAGGAGAAGAGGAGCAAAAAGAATAGCAAGAGTAATGGTGAGAGTGAGATTGCCGGTGTGAAGAGTTCCAAGTCTGGTAGTAGGGGACCCTATGCAGGGAAGATGAGTAGATGTCATCGTCAAAAAACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

65.54

Weight (kDa)

5.24

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 29 - 93 6.7e-09 DnaJ domain
ZUO1-like_ZHD PF21884 148 - 248 3e-15 Zuotin-like, zuotin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018041)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AccBSI CCGCTC 1 cut(s) 635
AccI GTMKAC 3 cut(s) 30, 390, 1503
AccII CGCG 2 cut(s) 191, 286
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 9 cut(s) 189, 210, 527, 530, 596, 635, 638, 649, 1229
AcuI CTGAAG 2 cut(s) 506, 1155
AcvI CACGTG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 617
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 7 cut(s) 151, 338, 503, 526, 1484, 1643, 1644
AflIII ACRYGT 1 cut(s) 1062
AgsI TTSAA 8 cut(s) 316, 385, 407, 437, 820, 964, 985, 1039
AjiI CACGTC 1 cut(s) 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
AluBI AGCT 6 cut(s) 226, 312, 451, 1093, 1117, 1133
AluI AGCT 6 cut(s) 226, 312, 451, 1093, 1117, 1133
Alw21I GWGCWC 2 cut(s) 45, 228
Alw26I GTCTC 1 cut(s) 1370
Ama87I CYCGRG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 496
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 4 cut(s) 166, 234, 322, 340
ApeKI GCWGC 2 cut(s) 451, 646
Asp700I GAANNNNTTC 1 cut(s) 959
AspLEI GCGC 4 cut(s) 102, 288, 619, 715
AspS9I GGNCC 1 cut(s) 1634
AsuC2I CCSGG 3 cut(s) 146, 305, 321
AsuHPI GGTGA 7 cut(s) 16, 487, 652, 1208, 1322, 1499, 1598
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 1634
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 228
BbrPI CACGTG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 45, 228
BbvI GCAGC 2 cut(s) 438, 658
BccI CCATC 9 cut(s) 83, 583, 748, 826, 1009, 1024, 1069, 1252, 1324
BceAI ACGGC 2 cut(s) 144, 409
BclI TGATCA 1 cut(s) 1102
BcnI CCSGG 3 cut(s) 146, 305, 321
BcoDI GTCTC 1 cut(s) 1370
BfaI CTAG 4 cut(s) 326, 1181, 1268, 1284
BfoI RGCGCY 2 cut(s) 103, 620
BisI GCNGC 5 cut(s) 452, 528, 596, 636, 647
BlsI GCNGC 5 cut(s) 453, 529, 597, 637, 648
Bme1390I CCNGG 3 cut(s) 146, 305, 321
Bme18I GGWCC 1 cut(s) 1634
BmeT110I CYCGRG 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 1063
BmgT120I GGNCC 1 cut(s) 1634
BmiI GGNNCC 5 cut(s) 594, 618, 858, 1635, 1636
BmrFI CCNGG 3 cut(s) 146, 305, 321
BmsI GCATC 2 cut(s) 252, 633
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 3 cut(s) 146, 305, 321
BsaAI YACGTR 2 cut(s) 40, 585
BsaBI GATNNNNATC 2 cut(s) 1101, 1176
BsaHI GRCGYC 1 cut(s) 617
BsaJI CCNNGG 4 cut(s) 87, 257, 303, 1412
BsaWI WCCGGW 3 cut(s) 496, 1477, 1484
BsaXI ACNNNNNCTCC 8 cut(s) 624, 654, 848, 878, 923, 953, 1411, 1441
Bsc4I CCNNNNNNNGG 7 cut(s) 151, 338, 503, 526, 1484, 1643, 1644
Bse118I RCCGGY 3 cut(s) 164, 874, 1601
Bse3DI GCAATG 2 cut(s) 1029, 1281
Bse8I GATNNNNATC 2 cut(s) 1101, 1176
BseAI TCCGGA 1 cut(s) 496
BseDI CCNNGG 4 cut(s) 87, 257, 303, 1412
BseGI GGATG 7 cut(s) 75, 267, 594, 1093, 1267, 1363, 1396
BseJI GATNNNNATC 2 cut(s) 1101, 1176
BseLI CCNNNNNNNGG 7 cut(s) 151, 338, 503, 526, 1484, 1643, 1644
BseMI GCAATG 2 cut(s) 1029, 1281
BseMII CTCAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 438, 658
BsgI GTGCAG 2 cut(s) 557, 1419
Bsh1236I CGCG 2 cut(s) 191, 286
BshFI GGCC 4 cut(s) 168, 236, 324, 342
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 2 cut(s) 45, 228
BsiHKCI CYCGRG 1 cut(s) 86
BslFI GGGAC 4 cut(s) 314, 521, 746, 1647
BslI CCNNNNNNNGG 7 cut(s) 151, 338, 503, 526, 1484, 1643, 1644
BsmAI GTCTC 1 cut(s) 1370
BsmFI GGGAC 4 cut(s) 314, 521, 746, 1647
BsmI GAATGC 1 cut(s) 1169
BsnI GGCC 4 cut(s) 168, 236, 324, 342
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 45, 228
Bsp13I TCCGGA 1 cut(s) 496
Bsp143I GATC 2 cut(s) 243, 1102
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 9 cut(s) 189, 210, 527, 530, 596, 635, 638, 649, 1229
BspANI GGCC 4 cut(s) 168, 236, 324, 342
BspCNI CTCAG 1 cut(s) 357
BspEI TCCGGA 1 cut(s) 496
BspFNI CGCG 2 cut(s) 191, 286
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 594, 618, 858, 1635, 1636
BspT107I GGYRCC 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 2 cut(s) 1029, 1281
BsrFI RCCGGY 3 cut(s) 164, 874, 1601
BssAI RCCGGY 3 cut(s) 164, 874, 1601
BssECI CCNNGG 4 cut(s) 87, 257, 303, 1412
BssMI GATC 2 cut(s) 243, 1102
BssNI GRCGYC 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 571
BstACI GRCGYC 1 cut(s) 617
BstBAI YACGTR 2 cut(s) 40, 585
BstC8I GCNNGC 2 cut(s) 166, 267
BstDEI CTNAG 2 cut(s) 46, 344
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 7 cut(s) 75, 267, 594, 1093, 1267, 1363, 1396
BstFNI CGCG 2 cut(s) 191, 286
BstH2I RGCGCY 2 cut(s) 103, 620
BstHHI GCGC 4 cut(s) 102, 288, 619, 715
BstKTI GATC 2 cut(s) 246, 1105
BstMAI GTCTC 1 cut(s) 1370
BstMBI GATC 2 cut(s) 243, 1102
BstMWI GCNNNNNNNGC 2 cut(s) 487, 1280
BstSCI CCNGG 3 cut(s) 144, 303, 319
BstUI CGCG 2 cut(s) 191, 286
BstV1I GCAGC 2 cut(s) 438, 658
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 4 cut(s) 168, 236, 324, 342
BtgI CCRYGG 1 cut(s) 257
BtrI CACGTC 1 cut(s) 1063
BtsCI GGATG 7 cut(s) 75, 267, 594, 1093, 1267, 1363, 1396
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 1 cut(s) 983
Cac8I GCNNGC 2 cut(s) 166, 267
CciI TCATGA 1 cut(s) 246
CfoI GCGC 4 cut(s) 102, 288, 619, 715
Cfr10I RCCGGY 3 cut(s) 164, 874, 1601
Cfr13I GGNCC 1 cut(s) 1634
CseI GACGC 2 cut(s) 292, 1489
CviAII CATG 6 cut(s) 247, 258, 599, 1106, 1370, 1454
DdeI CTNAG 2 cut(s) 46, 344
DinI GGCGCC 1 cut(s) 618
DpnI GATC 2 cut(s) 245, 1104
DpnII GATC 2 cut(s) 243, 1102
EciI GGCGGA 1 cut(s) 1244
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 257
Eco147I AGGCCT 2 cut(s) 236, 342
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 1634
Eco47III AGCGCT 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 506, 1155
Eco72I CACGTG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 1634
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 618
EheI GGCGCC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 6 cut(s) 250, 261, 602, 1109, 1373, 1457
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 965, 997
FaqI GGGAC 4 cut(s) 314, 521, 746, 1647
FatI CATG 6 cut(s) 246, 257, 598, 1105, 1369, 1453
FbaI TGATCA 1 cut(s) 1102
FblI GTMKAC 3 cut(s) 30, 390, 1503
Fnu4HI GCNGC 5 cut(s) 452, 528, 596, 636, 647
FokI GGATG 7 cut(s) 62, 274, 601, 1100, 1274, 1370, 1403
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 452, 528, 596, 636, 647
FspBI CTAG 4 cut(s) 326, 1181, 1268, 1284
GlaI GCGC 4 cut(s) 101, 287, 618, 714
GluI GCNGC 5 cut(s) 452, 528, 596, 636, 647
HaeII RGCGCY 2 cut(s) 103, 620
HaeIII GGCC 4 cut(s) 168, 236, 324, 342
HgaI GACGC 2 cut(s) 292, 1489
HhaI GCGC 4 cut(s) 102, 288, 619, 715
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 6 cut(s) 250, 261, 602, 1109, 1373, 1457
Hin6I GCGC 4 cut(s) 100, 286, 617, 713
HinP1I GCGC 4 cut(s) 100, 286, 617, 713
HincII GTYRAC 2 cut(s) 31, 1504
HindII GTYRAC 2 cut(s) 31, 1504
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 8 cut(s) 138, 348, 378, 461, 985, 1443, 1481, 1493
HphI GGTGA 7 cut(s) 16, 487, 652, 1208, 1322, 1499, 1598
Hpy166II GTNNAC 5 cut(s) 31, 391, 867, 1313, 1504
Hpy188I TCNGA 6 cut(s) 337, 347, 364, 466, 613, 993
Hpy188III TCNNGA 7 cut(s) 247, 437, 497, 565, 964, 1058, 1181
Hpy8I GTNNAC 5 cut(s) 31, 391, 867, 1313, 1504
Hpy99I CGWCG 5 cut(s) 368, 401, 571, 625, 1505
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 5 cut(s) 39, 399, 584, 657, 1062
HpyCH4V TGCA 4 cut(s) 538, 646, 1400, 1643
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 1280
HpyF3I CTNAG 2 cut(s) 46, 344
HpySE526I ACGT 5 cut(s) 39, 399, 584, 657, 1062
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 6 cut(s) 250, 261, 602, 1109, 1373, 1457
HspAI GCGC 4 cut(s) 100, 286, 617, 713
KasI GGCGCC 1 cut(s) 616
KflI GGGWCCC 1 cut(s) 1634
Kpn2I TCCGGA 1 cut(s) 496
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 1102
Kzo9I GATC 2 cut(s) 243, 1102
LmnI GCTCC 7 cut(s) 231, 448, 592, 632, 856, 1366, 1560
Lsp1109I GCAGC 2 cut(s) 438, 658
LweI GCATC 2 cut(s) 252, 633
MaeI CTAG 4 cut(s) 326, 1181, 1268, 1284
MaeII ACGT 5 cut(s) 39, 399, 584, 657, 1062
MalI GATC 2 cut(s) 245, 1104
MbiI CCGCTC 1 cut(s) 635
MboI GATC 2 cut(s) 243, 1102
MhlI GDGCHC 2 cut(s) 45, 228
MluCI AATT 2 cut(s) 547, 1317
Mly113I GGCGCC 1 cut(s) 617
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 5 cut(s) 36, 79, 387, 591, 1047
MroI TCCGGA 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 2 cut(s) 558, 1681
MslI CAYNNNNRTG 2 cut(s) 587, 1110
MspA1I CMGCKG 1 cut(s) 649
MspR9I CCNGG 3 cut(s) 146, 305, 321
Mva1269I GAATGC 1 cut(s) 1169
MvnI CGCG 2 cut(s) 191, 286
MwoI GCNNNNNNNGC 2 cut(s) 487, 1280
NaeI GCCGGC 1 cut(s) 166
NarI GGCGCC 1 cut(s) 617
NciI CCSGG 3 cut(s) 146, 305, 321
NcoI CCATGG 1 cut(s) 257
NdeII GATC 2 cut(s) 243, 1102
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 6 cut(s) 250, 261, 602, 1109, 1373, 1457
NlaIV GGNNCC 5 cut(s) 594, 618, 858, 1635, 1636
NmeAIII GCCGAG 1 cut(s) 295
PagI TCATGA 1 cut(s) 246
PceI AGGCCT 2 cut(s) 236, 342
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 617
PctI GAATGC 1 cut(s) 1169
PdiI GCCGGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 7 cut(s) 138, 348, 378, 985, 1443, 1481, 1493
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 5 cut(s) 453, 529, 597, 637, 648
PleI GAGTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 620
PmaCI CACGTG 1 cut(s) 585
PmlI CACGTG 1 cut(s) 585
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 2 cut(s) 40, 585
PpuMI RGGWCCY 1 cut(s) 1634
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 1634
PspCI CACGTG 1 cut(s) 585
PspN4I GGNNCC 5 cut(s) 594, 618, 858, 1635, 1636
PspPI GGNCC 1 cut(s) 1634
PspPPI RGGWCCY 1 cut(s) 1634
PsyI GACNNNGTC 1 cut(s) 152
RseI CAYNNNNRTG 2 cut(s) 587, 1110
SacI GAGCTC 1 cut(s) 228
SalI GTCGAC 2 cut(s) 29, 1502
SaqAI TTAA 2 cut(s) 558, 1681
SatI GCNGC 5 cut(s) 452, 528, 596, 636, 647
Sau3AI GATC 2 cut(s) 243, 1102
Sau96I GGNCC 1 cut(s) 1634
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 146, 305, 321
SduI GDGCHC 2 cut(s) 45, 228
SfaNI GCATC 2 cut(s) 252, 633
SfoI GGCGCC 1 cut(s) 618
SinI GGWCC 1 cut(s) 1634
SmiMI CAYNNNNRTG 2 cut(s) 587, 1110
Sse9I AATT 2 cut(s) 547, 1317
SseBI AGGCCT 2 cut(s) 236, 342
SsiI CCGC 9 cut(s) 189, 210, 527, 530, 596, 635, 638, 649, 1229
SspDI GGCGCC 1 cut(s) 616
SspMI CTAG 4 cut(s) 326, 1181, 1268, 1284
SstI GAGCTC 1 cut(s) 228
StuI AGGCCT 2 cut(s) 236, 342
StyD4I CCNGG 3 cut(s) 144, 303, 319
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 5 cut(s) 42, 402, 587, 660, 1065
TaqI TCGA 8 cut(s) 30, 69, 81, 108, 998, 1206, 1472, 1503
TasI AATT 2 cut(s) 547, 1317
TauI GCSGC 3 cut(s) 530, 598, 638
TfiI GAWTC 7 cut(s) 138, 348, 378, 985, 1443, 1481, 1493
Tru1I TTAA 2 cut(s) 558, 1681
Tru9I TTAA 2 cut(s) 558, 1681
TscAI CASTG 1 cut(s) 983
TseI GCWGC 2 cut(s) 451, 646
TspDTI ATGAA 5 cut(s) 263, 458, 1188, 1230, 1464
TspRI CASTG 1 cut(s) 983
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 1634
XbaI TCTAGA 1 cut(s) 1180
XmiI GTMKAC 3 cut(s) 30, 390, 1503
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 4 cut(s) 326, 1181, 1268, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.