RchiOBHm_Chr7g0183051

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018041
Physical Location & Seq
Reverse (-)
4106915 .. 4108588
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16329

Sequence Viewer

Length: 1674 bp
ATGGTGAAGTTCAACCAGCGCTTCGACTTCTACGAGCTCTTAGGCATCGAACCGGAAGACCTCTTAGACCTCGACCTCGATGACGCAGAACGCTATGTCGAAAAGGCTTACAAAGAAACGGCGAGGAGAATCCACCCGGACAAAGTCAGAGTCGCCGGCCTGAGCGAAGCCGAAGCCCAAGAGAAACAAGACGAAGCCACCGCAAAGTTCCAAGAGCTCCAAAAGGCCTACAACGTCATCAAAGACCCCATGCAGAGAGCCGACTATGACTTGTACCGCAAGAAAAACTTCACCCCGGAAACTTTCAAACCCAACCTCGTGCCCACCGAGGGCCTCAGATTCTCCGGCTACTCCAACGAGGGCCGGGGATTCTTCAAGGTCTACGGTGACGTTTTTGAGAAGATATACGCCAACGAGGTTGCTTTTCAAGAGGAGAAGAAGTTGCCGCCGGATTCGGTGATCAAGCCGCCGGAGATAGGGGACGAGCACAGACCCTATCCGGCGGTGGTGCAGTTCTACAACTACTGGCTCAACTTTGGGACCATAATGGACTTCACGTGGGAGGAGCCACACGACGAGTACGACTTGGCGGCGGCGCCTACCAAGAAGGGAGTGGCGGTGATGCGGAGGAAGAACATAAAGGCCAGGAAGAGGGCTAAGAATGAGTATAATAATAAAGTGAGGAGGTTGGCGCAGAATGTGAAGAGGAGGGACATTAGGGTTTTGGAGATGATGGCGCACAGGGAGGAGGAGAGGAAGAAGGAGATGGAGGAGGAGAAGGAGAGGAGGAGGAGGTTGAAGAAGGAGAAGATGGAGAAGGCTTTGGAGTTTGAGGAGCCGGAGTGGACGAAGCCTGTGGAGAGGAAGAGGAAGTATGGTGTGGAGGAGAAGGAGGAAGAGGAGAGGGAGGAATGGGAGTGCGTGGTGTGTAGGAAGGAGTTTAAGAGCGAGAAGCAGTGCTTGAATCACGAGATGTCGAAGAAGCATAGGGATATGGTAGCAGTGTTGATGGGGTTGAAGCACCGCGATTTGGTTGAGGAGGTCTTGGAGTTGATGGAGGAGGAGGGAGATGAGGATAAGGAACTTGAGCATGATGGTGTAGATGAGGTTTTGGAGGGAGAAGGTGAAGAAGAAAAGGAGAGTGAGAGTGAAGATGAGGTATCCGAATGTGTTGATGAAAATCCGAAAGAAGAAGTTGTTGATGGTGATGAAGAGGAAGAAGAGAATAAGGAGGATGATGAGATGGAAGTTCTTGAAGCAATGGTGGCTAGGCGAAAAACTAGTGTAAAAGTTGGTGAACCAATTTTTGAGCCCATGGCAACCATCATTGTTGTAGAGGAGGATGAGGTGGATATGGAGCACGAGGAGACAAAGAACATGGATAAGAATGGAGGAGAGAAGAAACAGAGGAGGAGGAGGAGTGTGAAGAGTACTAGAATCAATGAACATGATGATAAGAAGGAATCAAAATCGGATTCTAGTGCGGAATCTTGCGTTGACAATGGGAGTGAAGATGAGCAGAAGAGAAAGAAGGGAGGGAAGAAAGAGAAGAGGAGTAAAAGGAATACCAAAAGTAATGGTGAGAATGAGGATTCTGGTGTAAAGAATTCCAAGTCTAGTAATAGGATAAGGTATGCAGGGAAGAAGAGTAGAGGTGATTTTACCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

557

Amino Acids

65.67

Weight (kDa)

5.16

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 90 4.1e-11 DnaJ domain
ZUO1-like_ZHD PF21884 124 - 241 5.9e-14 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 305 - 330 5.2e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13880
rosa_chinensis RchiOBHm_Chr7g0183051
rosa_laevigata RLG00000005083
rosa_multiflora Rmu_co8037088.1_g000001 Rmu_sc0000014.1_g000004 Rmu_ssc0000111.1_g000002
rosa_roxburghii Rroxscaffold_3G00270810
rosa_rugosa Rorug06G0452100
rosa_samantha Rh7AG055600 Rh7DG055100
rosa_wichuraiana Rw7G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 1026
AcsI RAATTY 1 cut(s) 1606
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 3 cut(s) 275, 581, 1432
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
AgsI TTSAA 8 cut(s) 13, 307, 376, 428, 799, 964, 1018, 1256
AhlI ACTAGT 1 cut(s) 1280
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 2 cut(s) 37, 217
AluI AGCT 2 cut(s) 37, 217
Alw21I GWGCWC 4 cut(s) 39, 219, 489, 1362
Alw26I GTCTC 1 cut(s) 1361
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 5 cut(s) 157, 225, 331, 361, 642
ApoI RAATTY 1 cut(s) 1606
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 4 cut(s) 21, 598, 694, 739
AspS9I GGNCC 3 cut(s) 331, 361, 540
AsuC2I CCSGG 3 cut(s) 137, 296, 365
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 3 cut(s) 39, 219, 1314
BauI CACGAG 3 cut(s) 317, 968, 1361
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 4 cut(s) 39, 219, 489, 1362
BccI CCATC 9 cut(s) 727, 760, 805, 1003, 1048, 1088, 1196, 1237, 1331
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 1171
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 3 cut(s) 137, 296, 365
BcoDI GTCTC 1 cut(s) 1361
BcuI ACTAGT 1 cut(s) 1280
BfaI CTAG 5 cut(s) 1269, 1281, 1434, 1479, 1617
BfoI RGCGCY 2 cut(s) 22, 599
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 4 cut(s) 446, 467, 591, 594
BlsI GCNGC 4 cut(s) 447, 468, 592, 595
BmcAI AGTACT 1 cut(s) 1432
Bme1390I CCNGG 4 cut(s) 137, 296, 365, 646
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 331, 361, 540
BmiI GGNNCC 4 cut(s) 541, 567, 597, 837
BmrFI CCNGG 4 cut(s) 137, 296, 365, 646
BmsI GCATC 2 cut(s) 54, 612
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 3 cut(s) 137, 296, 365
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 294, 327, 364, 1314
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 8 cut(s) 425, 455, 603, 633, 827, 857, 1405, 1435
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1266
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 4 cut(s) 294, 327, 364, 1314
BseGI GGATG 2 cut(s) 1240, 1348
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BseMI GCAATG 1 cut(s) 1266
BseMII CTCAG 2 cut(s) 152, 349
BseNI ACTGG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 5 cut(s) 159, 227, 333, 363, 644
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 4 cut(s) 39, 219, 489, 1362
BslFI GGGAC 3 cut(s) 494, 553, 725
BslI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BsmAI GTCTC 1 cut(s) 1361
BsmFI GGGAC 3 cut(s) 494, 553, 725
BsnI GGCC 5 cut(s) 159, 227, 333, 363, 644
Bsp1286I GDGCHC 6 cut(s) 39, 219, 324, 489, 1314, 1362
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 1314
BspANI GGCC 5 cut(s) 159, 227, 333, 363, 644
BspCNI CTCAG 2 cut(s) 153, 348
BspFNI CGCG 1 cut(s) 1026
BspLI GGNNCC 4 cut(s) 541, 567, 597, 837
BspT107I GGYRCC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 1266
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 294, 327, 364, 1314
BssMI GATC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 3 cut(s) 317, 968, 1361
BssT1I CCWWGG 1 cut(s) 1314
Bst2BI CACGAG 3 cut(s) 317, 968, 1361
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 5 cut(s) 40, 64, 161, 335, 657
BstDSI CCRYGG 1 cut(s) 1314
BstF5I GGATG 2 cut(s) 1240, 1348
BstFNI CGCG 1 cut(s) 1026
BstH2I RGCGCY 2 cut(s) 22, 599
BstHHI GCGC 4 cut(s) 21, 598, 694, 739
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 1 cut(s) 1361
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 1 cut(s) 1265
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 4 cut(s) 135, 294, 363, 644
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 1 cut(s) 1026
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 5 cut(s) 159, 227, 333, 363, 644
BtgI CCRYGG 1 cut(s) 1314
BtsCI GGATG 2 cut(s) 1240, 1348
BtsI GCAGTG 2 cut(s) 962, 1008
BtsIMutI CAGTG 2 cut(s) 962, 1008
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 4 cut(s) 21, 598, 694, 739
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 3 cut(s) 331, 361, 540
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 274, 580, 1431
CviAII CATG 5 cut(s) 250, 1091, 1315, 1378, 1448
CviQI GTAC 3 cut(s) 274, 580, 1431
DdeI CTNAG 5 cut(s) 40, 64, 161, 335, 657
DinI GGCGCC 1 cut(s) 597
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
Ecl136II GAGCTC 2 cut(s) 37, 217
Eco130I CCWWGG 1 cut(s) 1314
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 3 cut(s) 39, 219, 1314
Eco47I GGWCC 1 cut(s) 540
Eco47III AGCGCT 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 37, 217
Eco72I CACGTG 1 cut(s) 558
EcoICRI GAGCTC 2 cut(s) 37, 217
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1606
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 1314
EcoT38I GRGCYC 3 cut(s) 39, 219, 1314
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 1314
FaeI CATG 5 cut(s) 253, 1094, 1318, 1381, 1451
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 944, 976
FaqI GGGAC 3 cut(s) 494, 553, 725
FatI CATG 5 cut(s) 249, 1090, 1314, 1377, 1447
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 446, 467, 591, 594
FokI GGATG 2 cut(s) 1247, 1355
FriOI GRGCYC 3 cut(s) 39, 219, 1314
Fsp4HI GCNGC 4 cut(s) 446, 467, 591, 594
FspBI CTAG 5 cut(s) 1269, 1281, 1434, 1479, 1617
GlaI GCGC 4 cut(s) 20, 597, 693, 738
GluI GCNGC 4 cut(s) 446, 467, 591, 594
HaeII RGCGCY 2 cut(s) 22, 599
HaeIII GGCC 5 cut(s) 159, 227, 333, 363, 644
HgaI GACGC 1 cut(s) 92
HhaI GCGC 4 cut(s) 21, 598, 694, 739
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 5 cut(s) 253, 1094, 1318, 1381, 1451
Hin6I GCGC 4 cut(s) 19, 596, 692, 737
HinP1I GCGC 4 cut(s) 19, 596, 692, 737
HincII GTYRAC 1 cut(s) 1498
HindII GTYRAC 1 cut(s) 1498
Hpy166II GTNNAC 4 cut(s) 382, 846, 1298, 1498
Hpy188I TCNGA 5 cut(s) 149, 338, 1165, 1185, 1474
Hpy188III TCNNGA 3 cut(s) 428, 968, 1253
Hpy8I GTNNAC 4 cut(s) 382, 846, 1298, 1498
Hpy99I CGWCG 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 234, 390, 557
HpyCH4V TGCA 3 cut(s) 253, 511, 1637
HpyF10VI GCNNNNNNNGC 1 cut(s) 1265
HpyF3I CTNAG 5 cut(s) 40, 64, 161, 335, 657
HpySE526I ACGT 3 cut(s) 234, 390, 557
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 5 cut(s) 253, 1094, 1318, 1381, 1451
HspAI GCGC 4 cut(s) 19, 596, 692, 737
KasI GGCGCC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 4 cut(s) 222, 565, 835, 1357
LweI GCATC 2 cut(s) 54, 612
MaeI CTAG 5 cut(s) 1269, 1281, 1434, 1479, 1617
MaeII ACGT 3 cut(s) 234, 390, 557
MaeIII GTNAC 1 cut(s) 386
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MhlI GDGCHC 6 cut(s) 39, 219, 324, 489, 1314, 1362
MluCI AATT 2 cut(s) 1302, 1606
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 2 cut(s) 942, 1672
MslI CAYNNNNRTG 1 cut(s) 1095
MspR9I CCNGG 4 cut(s) 137, 296, 365, 646
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 1 cut(s) 1265
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 3 cut(s) 137, 296, 365
NcoI CCATGG 1 cut(s) 1314
NdeII GATC 1 cut(s) 459
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 253, 1094, 1318, 1381, 1451
NlaIV GGNNCC 4 cut(s) 541, 567, 597, 837
NmuCI GTSAC 1 cut(s) 386
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 324, 579
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 447, 468, 592, 595
PleI GAGTC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 599
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 558
Psp124BI GAGCTC 2 cut(s) 39, 219
Psp6I CCWGG 1 cut(s) 644
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 4 cut(s) 541, 567, 597, 837
PspPI GGNCC 3 cut(s) 331, 361, 540
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 3 cut(s) 275, 581, 1432
RsaNI GTAC 3 cut(s) 274, 580, 1431
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 2 cut(s) 39, 219
SaqAI TTAA 2 cut(s) 942, 1672
SatI GCNGC 4 cut(s) 446, 467, 591, 594
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 3 cut(s) 331, 361, 540
ScaI AGTACT 1 cut(s) 1432
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 137, 296, 365, 646
SduI GDGCHC 6 cut(s) 39, 219, 324, 489, 1314, 1362
SfaNI GCATC 2 cut(s) 54, 612
SfoI GGCGCC 1 cut(s) 597
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
SpeI ACTAGT 1 cut(s) 1280
Sse9I AATT 2 cut(s) 1302, 1606
SseBI AGGCCT 1 cut(s) 227
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 5 cut(s) 1269, 1281, 1434, 1479, 1617
SstI GAGCTC 2 cut(s) 39, 219
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 135, 294, 363, 644
StyI CCWWGG 1 cut(s) 1314
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 237, 393, 560
TaqI TCGA 6 cut(s) 24, 48, 72, 78, 99, 977
TasI AATT 2 cut(s) 1302, 1606
TatI WGTACW 1 cut(s) 1430
TauI GCSGC 4 cut(s) 448, 469, 593, 596
Tru1I TTAA 2 cut(s) 942, 1672
Tru9I TTAA 2 cut(s) 942, 1672
TscAI CASTG 2 cut(s) 962, 1008
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 1191, 1224, 1458
TspRI CASTG 2 cut(s) 962, 1008
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 540
XapI RAATTY 1 cut(s) 1606
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 5 cut(s) 1269, 1281, 1434, 1479, 1617
ZrmI AGTACT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.