Rw7G004520

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0018041
Physical Location & Seq
Reverse (-)
3817200 .. 3818889
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004520.1

Sequence Viewer

Length: 1521 bp
ATGGTGAAGTTCAACCAGCGCTTCGACTTCTACGAGCTCTTAGGCATCGAACCGGAAGACCTCTTAGACCTCGACCTCGATGACGCAGAACGCTATGTCGAAAAGGCTTACAAAGAAACGGCGAGGAGAATCCACCCGGACAAAGTCAGAGTCGCCGGCCTGAGCGAAGCCGAAGCCCAAGAGAAACAAGACGAAGCCACCGCAAAGTTCCAAGAGCTCCAAAAGGCCTACAACGTCATCAAAGACCCCATGCAGAGAGCCGACTATGACTTGTACCGCAAGAAAAACTTCACCCCGGAAACTTTCAAACCCAACCTCGTGCCCACCGAGGGCCTCAGATTCTCCGGCTACTCCAACGAGGGCCGGGGATTCTTCAAGGTCTACGGTGACGTTTTTGAGAAGATATACGCCAACGAGGTTGCTTTTCAAGAGGAGAAGAAGTTGCCGCCGGATTCGGTGATCAAGCCGCCGGAGATAGGGGACGAGCACAGACCCTATCCGGCGGTGGTACAGTTCTACAACTACTGGCTCAACTTTGGGACCATAATGGACTTCACGTGGGAGGAGCCACACGACGAGTACGACTTGGCGGCGGCGCCTACCAAGAAGGGAGTGGCGGTGATGCGGAGGAAGAACATAAAGGCCAGGAAGAGGGCTAAGACTGAGTATAATAATAAAGTGAGGAGGTTGGCGCAGAATCCGGAGTGGACGAAGCCGGTGGAGAGGAAGAGGAAGTATGGTGTGGAGGAGAAGGAGGAAGAGGAGAGGGAGGAATGGGAGTGCGTGGTGTGTAGGAAGGAGTTTAAGAGCGAGAAGCAGTGCTTGAATCACGAGATGTCGAAGAAGCATAGGGATATGGTAGCAGTGTTGATGGGGTTGAAGCACCGCGATTTGGTTGAGGAGGTCTTGGAGTTGATGGAGGAGGAGGGAGATGAGGATAAGGAACTTGAGCATGATGGTGTAGATGAGGTTTTGGAGGGAGAAGGTGAAGAAGAAAGGGAGAGTGAGAGTGAAGATGAGGTATCCGAATGTGTCGATGAAAATCCGAAAGAAGAGGTTGGTGAAGAAGTTGTTGATGGTGATGAAGAGGAAGAAGAGAATAAGGAGGATGATGAGATGGAAGTTCTTGAAGCAATGGTGGCTAGACGAAAGACTAGTGTAAAAGTTGGTGAACCAATTTTTGAGCCCATGGCAACCATCATTCACGAGGAGACAAAGAACATGGATAAGAATGGAGGAGAGAAGAAACAGAGGAGGAGGAGGAGTGTGAAGAGTACTAGAATCAATGAACATGATGATAAGAAGGAATCAAAATCGGATTCTAGTGCGGAATCTTGCGTTGACAATGGGAGTGAAGATGAGCAGAAGAGAAAGAAGGGAGGGAAGAAAGAGAAGAGGAGTAAAAGGAATACCAAAAGTAATGGTGAGAGTGAGGATTCTGGTGTAAAGAATTCCAAGTCTAGTAATAGGATAAGGTATGCAGGGAAGAAGAGTAGAGTGATTTTACCAAACATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

506

Amino Acids

59.02

Weight (kDa)

5.09

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 90 4.3e-11 DnaJ domain
ZUO1-like_ZHD PF21884 124 - 233 1.7e-12 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 259 - 284 4.6e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13880
rosa_chinensis RchiOBHm_Chr7g0183051
rosa_laevigata RLG00000005083
rosa_multiflora Rmu_co8037088.1_g000001 Rmu_sc0000014.1_g000004 Rmu_ssc0000111.1_g000002
rosa_roxburghii Rroxscaffold_3G00270810
rosa_rugosa Rorug06G0452100
rosa_samantha Rh7AG055600 Rh7DG055100
rosa_wichuraiana Rw7G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 888
AccIII TCCGGA 1 cut(s) 700
AcsI RAATTY 1 cut(s) 1450
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 4 cut(s) 275, 510, 581, 1276
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 892
AgsI TTSAA 7 cut(s) 13, 307, 376, 428, 826, 880, 1130
AhlI ACTAGT 1 cut(s) 1154
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 2 cut(s) 37, 217
AluI AGCT 2 cut(s) 37, 217
Alw21I GWGCWC 3 cut(s) 39, 219, 489
Alw26I GTCTC 1 cut(s) 1205
Aor13HI TCCGGA 1 cut(s) 700
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 5 cut(s) 157, 225, 331, 361, 642
ApoI RAATTY 1 cut(s) 1450
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AseI ATTAAT 1 cut(s) 1515
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 3 cut(s) 21, 598, 694
AspS9I GGNCC 3 cut(s) 331, 361, 540
AsuC2I CCSGG 3 cut(s) 137, 296, 365
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 3 cut(s) 39, 219, 1188
BauI CACGAG 3 cut(s) 317, 830, 1205
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 39, 219, 489
BccI CCATC 6 cut(s) 865, 910, 950, 1070, 1111, 1205
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 1033
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 3 cut(s) 137, 296, 365
BcoDI GTCTC 1 cut(s) 1205
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 5 cut(s) 1143, 1155, 1278, 1323, 1461
BfoI RGCGCY 2 cut(s) 22, 599
BfuI GTATCC 1 cut(s) 1033
BisI GCNGC 4 cut(s) 446, 467, 591, 594
BlsI GCNGC 4 cut(s) 447, 468, 592, 595
BmcAI AGTACT 1 cut(s) 1276
Bme1390I CCNGG 4 cut(s) 137, 296, 365, 646
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 331, 361, 540
BmiI GGNNCC 3 cut(s) 541, 567, 597
BmrFI CCNGG 4 cut(s) 137, 296, 365, 646
BmsI GCATC 2 cut(s) 54, 612
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 968
BpuMI CCSGG 3 cut(s) 137, 296, 365
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 1041
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 294, 327, 364, 1188
BsaWI WCCGGW 2 cut(s) 52, 700
BsaXI ACNNNNNCTCC 6 cut(s) 425, 455, 603, 633, 1249, 1279
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 476, 651, 892
Bse118I RCCGGY 2 cut(s) 155, 715
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 1 cut(s) 1041
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 4 cut(s) 294, 327, 364, 1188
BseGI GGATG 1 cut(s) 1114
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 892
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 3 cut(s) 152, 349, 654
BseNI ACTGG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 888
BshFI GGCC 5 cut(s) 159, 227, 333, 363, 644
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 3 cut(s) 39, 219, 489
BslFI GGGAC 2 cut(s) 494, 553
BslI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 892
BsmAI GTCTC 1 cut(s) 1205
BsmFI GGGAC 2 cut(s) 494, 553
BsnI GGCC 5 cut(s) 159, 227, 333, 363, 644
Bsp1286I GDGCHC 5 cut(s) 39, 219, 324, 489, 1188
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 1188
BspANI GGCC 5 cut(s) 159, 227, 333, 363, 644
BspCNI CTCAG 3 cut(s) 153, 348, 655
BspEI TCCGGA 1 cut(s) 700
BspFNI CGCG 1 cut(s) 888
BspLI GGNNCC 3 cut(s) 541, 567, 597
BspT107I GGYRCC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 2 cut(s) 155, 715
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 2 cut(s) 155, 715
BssECI CCNNGG 4 cut(s) 294, 327, 364, 1188
BssMI GATC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 3 cut(s) 317, 830, 1205
BssT1I CCWWGG 1 cut(s) 1188
Bst2BI CACGAG 3 cut(s) 317, 830, 1205
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 2 cut(s) 386, 513
BstACI GRCGYC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 6 cut(s) 40, 64, 161, 335, 657, 663
BstDSI CCRYGG 1 cut(s) 1188
BstF5I GGATG 1 cut(s) 1114
BstFNI CGCG 1 cut(s) 888
BstH2I RGCGCY 2 cut(s) 22, 599
BstHHI GCGC 3 cut(s) 21, 598, 694
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 1 cut(s) 1205
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 1 cut(s) 1139
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 4 cut(s) 135, 294, 363, 644
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 5 cut(s) 159, 227, 333, 363, 644
BtgI CCRYGG 1 cut(s) 1188
BtsCI GGATG 1 cut(s) 1114
BtsI GCAGTG 2 cut(s) 824, 870
BtsIMutI CAGTG 2 cut(s) 824, 870
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 3 cut(s) 21, 598, 694
Cfr10I RCCGGY 2 cut(s) 155, 715
Cfr13I GGNCC 3 cut(s) 331, 361, 540
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 274, 509, 580, 1275
CviAII CATG 5 cut(s) 250, 953, 1189, 1222, 1292
CviQI GTAC 4 cut(s) 274, 509, 580, 1275
DdeI CTNAG 6 cut(s) 40, 64, 161, 335, 657, 663
DinI GGCGCC 1 cut(s) 597
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
Ecl136II GAGCTC 2 cut(s) 37, 217
Eco130I CCWWGG 1 cut(s) 1188
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 3 cut(s) 39, 219, 1188
Eco47I GGWCC 1 cut(s) 540
Eco47III AGCGCT 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 37, 217
Eco72I CACGTG 1 cut(s) 558
EcoICRI GAGCTC 2 cut(s) 37, 217
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1450
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 1188
EcoT38I GRGCYC 3 cut(s) 39, 219, 1188
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 1188
FaeI CATG 5 cut(s) 253, 956, 1192, 1225, 1295
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 806, 838
FaqI GGGAC 2 cut(s) 494, 553
FatI CATG 5 cut(s) 249, 952, 1188, 1221, 1291
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 446, 467, 591, 594
FokI GGATG 1 cut(s) 1121
FriOI GRGCYC 3 cut(s) 39, 219, 1188
Fsp4HI GCNGC 4 cut(s) 446, 467, 591, 594
FspBI CTAG 5 cut(s) 1143, 1155, 1278, 1323, 1461
GlaI GCGC 3 cut(s) 20, 597, 693
GluI GCNGC 4 cut(s) 446, 467, 591, 594
HaeII RGCGCY 2 cut(s) 22, 599
HaeIII GGCC 5 cut(s) 159, 227, 333, 363, 644
HgaI GACGC 1 cut(s) 92
HhaI GCGC 3 cut(s) 21, 598, 694
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 5 cut(s) 253, 956, 1192, 1225, 1295
Hin6I GCGC 3 cut(s) 19, 596, 692
HinP1I GCGC 3 cut(s) 19, 596, 692
HincII GTYRAC 1 cut(s) 1342
HindII GTYRAC 1 cut(s) 1342
Hpy166II GTNNAC 4 cut(s) 382, 708, 1172, 1342
Hpy188I TCNGA 5 cut(s) 149, 338, 1027, 1047, 1318
Hpy188III TCNNGA 5 cut(s) 428, 701, 830, 1127, 1205
Hpy8I GTNNAC 4 cut(s) 382, 708, 1172, 1342
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 6 cut(s) 601, 745, 790, 977, 1297, 1369
HpyCH4III ACNGT 2 cut(s) 386, 513
HpyCH4IV ACGT 3 cut(s) 234, 390, 557
HpyCH4V TGCA 2 cut(s) 253, 1481
HpyF10VI GCNNNNNNNGC 1 cut(s) 1139
HpyF3I CTNAG 6 cut(s) 40, 64, 161, 335, 657, 663
HpySE526I ACGT 3 cut(s) 234, 390, 557
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 5 cut(s) 253, 956, 1192, 1225, 1295
HspAI GCGC 3 cut(s) 19, 596, 692
KasI GGCGCC 1 cut(s) 595
Kpn2I TCCGGA 1 cut(s) 700
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 222, 565
LweI GCATC 2 cut(s) 54, 612
MaeI CTAG 5 cut(s) 1143, 1155, 1278, 1323, 1461
MaeII ACGT 3 cut(s) 234, 390, 557
MaeIII GTNAC 1 cut(s) 386
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MhlI GDGCHC 5 cut(s) 39, 219, 324, 489, 1188
MluCI AATT 3 cut(s) 1176, 1450, 1516
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 378
MroI TCCGGA 1 cut(s) 700
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 3 cut(s) 804, 1515, 1519
MslI CAYNNNNRTG 1 cut(s) 957
MspR9I CCNGG 4 cut(s) 137, 296, 365, 646
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 1 cut(s) 1139
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 3 cut(s) 137, 296, 365
NcoI CCATGG 1 cut(s) 1188
NdeII GATC 1 cut(s) 459
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 253, 956, 1192, 1225, 1295
NlaIV GGNNCC 3 cut(s) 541, 567, 597
NmuCI GTSAC 1 cut(s) 386
PacI TTAATTAA 1 cut(s) 1519
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 324, 579
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 447, 468, 592, 595
PleI GAGTC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 599
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 558
PshBI ATTAAT 1 cut(s) 1515
Psp124BI GAGCTC 2 cut(s) 39, 219
Psp6I CCWGG 1 cut(s) 644
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 541, 567, 597
PspPI GGNCC 3 cut(s) 331, 361, 540
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 4 cut(s) 275, 510, 581, 1276
RsaNI GTAC 4 cut(s) 274, 509, 580, 1275
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 2 cut(s) 39, 219
SaqAI TTAA 3 cut(s) 804, 1515, 1519
SatI GCNGC 4 cut(s) 446, 467, 591, 594
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 3 cut(s) 331, 361, 540
ScaI AGTACT 1 cut(s) 1276
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 137, 296, 365, 646
SduI GDGCHC 5 cut(s) 39, 219, 324, 489, 1188
SfaNI GCATC 2 cut(s) 54, 612
SfoI GGCGCC 1 cut(s) 597
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SpeI ACTAGT 1 cut(s) 1154
Sse9I AATT 3 cut(s) 1176, 1450, 1516
SseBI AGGCCT 1 cut(s) 227
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 5 cut(s) 1143, 1155, 1278, 1323, 1461
SstI GAGCTC 2 cut(s) 39, 219
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 135, 294, 363, 644
StyI CCWWGG 1 cut(s) 1188
TaaI ACNGT 2 cut(s) 386, 513
TaiI ACGT 3 cut(s) 237, 393, 560
TaqI TCGA 7 cut(s) 24, 48, 72, 78, 99, 839, 1035
TasI AATT 3 cut(s) 1176, 1450, 1516
TatI WGTACW 1 cut(s) 1274
TauI GCSGC 4 cut(s) 448, 469, 593, 596
Tru1I TTAA 3 cut(s) 804, 1515, 1519
Tru9I TTAA 3 cut(s) 804, 1515, 1519
TscAI CASTG 2 cut(s) 824, 870
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 1053, 1098, 1302
TspRI CASTG 2 cut(s) 824, 870
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 1515
XapI RAATTY 1 cut(s) 1450
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 5 cut(s) 1143, 1155, 1278, 1323, 1461
ZrmI AGTACT 1 cut(s) 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.