RLG00000005083

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018041
Physical Location & Seq
Forward (+)
64872846 .. 64874531
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005083

Sequence Viewer

Length: 1686 bp
ATGGTGAAGTTCAACCAGCGCTTCGACTACTACGAGCTCTTAGGCATCGAACCGGAAGACCTCTTAGACCTCGACCTCGATGACGCAGAACGCTATGTCGAAAAGGCTTACAAAGAAACGGCGAGGAGAATCCACCCGGACAAAGTCAGAGTCGCCGGCCTGAGCGAAGCCGAAGCCAAAGAGAAACAAGACGAAGCCACCGCAAAGTTCCAAGAGCTCCAAAAGGCCTACGACGTCATCAAAGACCCCATGCAAAGAGCTGACTATGACTTGTACCGCAAGAAAAACTTCACCCCGGAAACTTTCAAACCCAACCTCGTGCCCACCGAGGGCCTCAGATTCTCCGGCTACTCCAACGAGGGCCGGGGATTCTTCAAGGTCTACGGTGACGTTTTTGAGAAGATATACGCCAACGAGGTTGCTTTTCAAGAGGAGAAGAAGTTGCCGCCGGATTCAGTGATCAAGCCGCCGGAGATAGGGGACGAACACAGACCCTATCCGGCGGTGGTGCAGTTCTACAACTACTGGCTCAACTTTGGGACCATAATGGACTTCACGTGGGAGGATCCGCACGACGAGTACGACTTGGCGGCAGCGCCTACCAAGAAGGGAGTGGCGGTGATGCGGAGGAAGAACATAAAGGCCAGGAAGAGGGCTAAGAATGAGTATAATAATAAAGTGAGGAGGTTGGCGCAGAATGTGAGGAGGAGGGACATTAGGGTTTTGGAGATGATGGCGCACAGGGAGGAGGAGAGGAAGAAGGAGATGGAGGAGGAGAAGGAGAGGAGGAGGAGGTTGAAGAAGGAGAAGATGGAGAAGGCTTTGGAGTATGAGGAGCCGGAGTGGACGAAGCCGGTGGAGAGGAAGAGGAAGTATGGTGTGGAGGAGAAGGAGGAAGAGGAGAGGGAGGAATGGGAGTGCGTGTTGTGTAGGAAGGAGTTTAAGAGCGAGAAGCAGTGCTTGAATCACGAGATGTCGAAGAAGCATAGGGACATGGTAGCAGTGTTGATGGGGTTGAAGCACCGCGATTTGGTTGAGGAGGTCTTGGAGTTGATGGAGGAGGAGGGAGATGAGGATAAGGAACTTGAGCATGATGGTGTAGATGAGGTTTTGGAGGGAGAAGGTGAAGAAGAAAGGGAGAGTGAGAGTGAAGATGAGGTATCCGAATGTGTTGATGAAAATCCGAAAGAAGAGGTTGGTGAAGAAGTTGTTGATGGTGATGAAGAGAAAGAAGATGATAAGGAGGATGATGAGATGGAAGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACTAGTGTAAAAGTTGGTGAACCAATTTTTGAGCCCATGGCAACCATCATTGACGTAGCGGAGGATGAGGTGGATATGGAGCACGAGGAGACAAAGAACATGGATAAGAATGGAGGAGAGAAGAAACAGAGGAGGAGGAGGAGTGTGAAGAGTACTAGAATCAATGAACATGATGATAAGAAGGAATCAAAATCGGATTCTAGTGCGGAATCTTGCGTTGACAATGGGAGTGAAGATGAGCAGAAGAGAAAGAAGGGAGGGAAGAAAGAGAAGAGGAGTAAAAGGAATACCAAAAGTAATGGTGACAGTGAGGATTCTGGTGTAAAGAATTCCAAGTCTAGTAATAGGATAAGGTATGCAGGGAAGAAGAGTAGAGATGATTTTGCCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

562

Amino Acids

66.11

Weight (kDa)

5.11

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 90 5.3e-11 DnaJ domain
ZUO1-like_ZHD PF21884 124 - 241 2.9e-14 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 305 - 330 3.9e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13880
rosa_chinensis RchiOBHm_Chr7g0183051
rosa_laevigata RLG00000005083
rosa_multiflora Rmu_co8037088.1_g000001 Rmu_sc0000014.1_g000004 Rmu_ssc0000111.1_g000002
rosa_roxburghii Rroxscaffold_3G00270810
rosa_rugosa Rorug06G0452100
rosa_samantha Rh7AG055600 Rh7DG055100
rosa_wichuraiana Rw7G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 1026
AclWI GGATC 2 cut(s) 560, 573
AcsI RAATTY 1 cut(s) 1618
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 3 cut(s) 275, 581, 1444
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
AgsI TTSAA 8 cut(s) 13, 307, 376, 428, 799, 964, 1018, 1268
AhlI ACTAGT 1 cut(s) 1292
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 3 cut(s) 37, 217, 260
AluI AGCT 3 cut(s) 37, 217, 260
Alw21I GWGCWC 3 cut(s) 39, 219, 1374
Alw26I GTCTC 1 cut(s) 1373
AlwI GGATC 2 cut(s) 560, 573
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 5 cut(s) 157, 225, 331, 361, 642
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 1618
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 4 cut(s) 21, 598, 694, 739
AspS9I GGNCC 3 cut(s) 331, 361, 540
AsuC2I CCSGG 3 cut(s) 137, 296, 365
AsuHPI GGTGA 9 cut(s) 16, 283, 398, 631, 1136, 1211, 1229, 1319, 1604
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 324
BamHI GGATCC 1 cut(s) 565
BanII GRGCYC 3 cut(s) 39, 219, 1326
BauI CACGAG 3 cut(s) 317, 968, 1373
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 39, 219, 1374
BbvI GCAGC 1 cut(s) 605
BccI CCATC 9 cut(s) 727, 760, 805, 1003, 1048, 1088, 1208, 1249, 1343
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 1171
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 3 cut(s) 137, 296, 365
BcoDI GTCTC 1 cut(s) 1373
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 4 cut(s) 1293, 1446, 1491, 1629
BfoI RGCGCY 2 cut(s) 22, 599
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 4 cut(s) 446, 467, 591, 594
BlsI GCNGC 4 cut(s) 447, 468, 592, 595
BmcAI AGTACT 1 cut(s) 1444
Bme1390I CCNGG 4 cut(s) 137, 296, 365, 646
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 331, 361, 540
BmiI GGNNCC 3 cut(s) 541, 567, 837
BmrFI CCNGG 4 cut(s) 137, 296, 365, 646
BmsI GCATC 2 cut(s) 54, 612
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 3 cut(s) 137, 296, 365
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 294, 327, 364, 1326
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
Bse118I RCCGGY 2 cut(s) 155, 853
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1278
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 4 cut(s) 294, 327, 364, 1326
BseGI GGATG 2 cut(s) 1252, 1360
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 2 cut(s) 152, 349
BseNI ACTGG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 5 cut(s) 159, 227, 333, 363, 644
BsiHKAI GWGCWC 3 cut(s) 39, 219, 1374
BslFI GGGAC 4 cut(s) 494, 553, 725, 1004
BslI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BsmAI GTCTC 1 cut(s) 1373
BsmFI GGGAC 4 cut(s) 494, 553, 725, 1004
BsnI GGCC 5 cut(s) 159, 227, 333, 363, 644
Bsp1286I GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
Bsp143I GATC 2 cut(s) 459, 565
Bsp19I CCATGG 1 cut(s) 1326
BspANI GGCC 5 cut(s) 159, 227, 333, 363, 644
BspCNI CTCAG 2 cut(s) 153, 348
BspFNI CGCG 1 cut(s) 1026
BspLI GGNNCC 3 cut(s) 541, 567, 837
BspPI GGATC 2 cut(s) 560, 573
BsrDI GCAATG 1 cut(s) 1278
BsrFI RCCGGY 2 cut(s) 155, 853
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 2 cut(s) 155, 853
BssECI CCNNGG 4 cut(s) 294, 327, 364, 1326
BssMI GATC 2 cut(s) 459, 565
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 3 cut(s) 317, 968, 1373
BssT1I CCWWGG 1 cut(s) 1326
Bst2BI CACGAG 3 cut(s) 317, 968, 1373
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 2 cut(s) 386, 1598
Bst6I CTCTTC 9 cut(s) 644, 860, 891, 1185, 1218, 1433, 1529, 1556, 1652
BstACI GRCGYC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 5 cut(s) 40, 64, 161, 335, 657
BstDSI CCRYGG 1 cut(s) 1326
BstF5I GGATG 2 cut(s) 1252, 1360
BstFNI CGCG 1 cut(s) 1026
BstH2I RGCGCY 2 cut(s) 22, 599
BstHHI GCGC 4 cut(s) 21, 598, 694, 739
BstKTI GATC 2 cut(s) 462, 568
BstMAI GTCTC 1 cut(s) 1373
BstMBI GATC 2 cut(s) 459, 565
BstMWI GCNNNNNNNGC 1 cut(s) 1277
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 4 cut(s) 135, 294, 363, 644
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 5 cut(s) 159, 227, 333, 363, 644
BtgI CCRYGG 1 cut(s) 1326
BtsCI GGATG 2 cut(s) 1252, 1360
BtsI GCAGTG 2 cut(s) 962, 1008
BtsIMutI CAGTG 4 cut(s) 462, 962, 1008, 1603
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 4 cut(s) 21, 598, 694, 739
Cfr10I RCCGGY 2 cut(s) 155, 853
Cfr13I GGNCC 3 cut(s) 331, 361, 540
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 274, 580, 1443
CviAII CATG 6 cut(s) 250, 994, 1091, 1327, 1390, 1460
CviQI GTAC 3 cut(s) 274, 580, 1443
DdeI CTNAG 5 cut(s) 40, 64, 161, 335, 657
DpnI GATC 2 cut(s) 461, 567
DpnII GATC 2 cut(s) 459, 565
Eam1104I CTCTTC 9 cut(s) 644, 860, 891, 1185, 1218, 1433, 1529, 1556, 1652
EarI CTCTTC 9 cut(s) 644, 860, 891, 1185, 1218, 1433, 1529, 1556, 1652
Ecl136II GAGCTC 2 cut(s) 37, 217
Eco130I CCWWGG 1 cut(s) 1326
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 3 cut(s) 39, 219, 1326
Eco47I GGWCC 1 cut(s) 540
Eco47III AGCGCT 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 37, 217
Eco72I CACGTG 1 cut(s) 558
EcoICRI GAGCTC 2 cut(s) 37, 217
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1618
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 1326
EcoT38I GRGCYC 3 cut(s) 39, 219, 1326
ErhI CCWWGG 1 cut(s) 1326
FaeI CATG 6 cut(s) 253, 997, 1094, 1330, 1393, 1463
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 944, 976
FaqI GGGAC 4 cut(s) 494, 553, 725, 1004
FatI CATG 6 cut(s) 249, 993, 1090, 1326, 1389, 1459
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 446, 467, 591, 594
FokI GGATG 2 cut(s) 1259, 1367
FriOI GRGCYC 3 cut(s) 39, 219, 1326
Fsp4HI GCNGC 4 cut(s) 446, 467, 591, 594
FspBI CTAG 4 cut(s) 1293, 1446, 1491, 1629
GlaI GCGC 4 cut(s) 20, 597, 693, 738
GluI GCNGC 4 cut(s) 446, 467, 591, 594
HaeII RGCGCY 2 cut(s) 22, 599
HaeIII GGCC 5 cut(s) 159, 227, 333, 363, 644
HgaI GACGC 1 cut(s) 92
HhaI GCGC 4 cut(s) 21, 598, 694, 739
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 253, 997, 1094, 1330, 1393, 1463
Hin6I GCGC 4 cut(s) 19, 596, 692, 737
HinP1I GCGC 4 cut(s) 19, 596, 692, 737
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HphI GGTGA 9 cut(s) 16, 283, 398, 631, 1136, 1211, 1229, 1319, 1604
Hpy166II GTNNAC 4 cut(s) 382, 846, 1310, 1510
Hpy188I TCNGA 5 cut(s) 149, 338, 1165, 1185, 1486
Hpy188III TCNNGA 3 cut(s) 428, 968, 1265
Hpy8I GTNNAC 4 cut(s) 382, 846, 1310, 1510
Hpy99I CGWCG 2 cut(s) 236, 578
HpyCH4III ACNGT 2 cut(s) 386, 1598
HpyCH4IV ACGT 4 cut(s) 234, 390, 557, 1344
HpyCH4V TGCA 3 cut(s) 253, 511, 1649
HpyF10VI GCNNNNNNNGC 1 cut(s) 1277
HpyF3I CTNAG 5 cut(s) 40, 64, 161, 335, 657
HpySE526I ACGT 4 cut(s) 234, 390, 557, 1344
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 253, 997, 1094, 1330, 1393, 1463
HspAI GCGC 4 cut(s) 19, 596, 692, 737
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 2 cut(s) 459, 565
LmnI GCTCC 3 cut(s) 222, 835, 1369
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 2 cut(s) 54, 612
MaeI CTAG 4 cut(s) 1293, 1446, 1491, 1629
MaeII ACGT 4 cut(s) 234, 390, 557, 1344
MaeIII GTNAC 2 cut(s) 386, 1592
MalI GATC 2 cut(s) 461, 567
MboI GATC 2 cut(s) 459, 565
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
MluCI AATT 2 cut(s) 1314, 1618
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 2 cut(s) 942, 1684
MslI CAYNNNNRTG 1 cut(s) 1095
MspR9I CCNGG 4 cut(s) 137, 296, 365, 646
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 1 cut(s) 1277
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 3 cut(s) 137, 296, 365
NcoI CCATGG 1 cut(s) 1326
NdeII GATC 2 cut(s) 459, 565
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 6 cut(s) 253, 997, 1094, 1330, 1393, 1463
NlaIV GGNNCC 3 cut(s) 541, 567, 837
NmuCI GTSAC 2 cut(s) 386, 1592
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 324, 579
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 447, 468, 592, 595
PleI GAGTC 1 cut(s) 158
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 558
Psp124BI GAGCTC 2 cut(s) 39, 219
Psp6I CCWGG 1 cut(s) 644
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 541, 567, 837
PspPI GGNCC 3 cut(s) 331, 361, 540
PsuI RGATCY 1 cut(s) 565
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 3 cut(s) 275, 581, 1444
RsaNI GTAC 3 cut(s) 274, 580, 1443
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 2 cut(s) 39, 219
SaqAI TTAA 2 cut(s) 942, 1684
SatI GCNGC 4 cut(s) 446, 467, 591, 594
Sau3AI GATC 2 cut(s) 459, 565
Sau96I GGNCC 3 cut(s) 331, 361, 540
ScaI AGTACT 1 cut(s) 1444
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 137, 296, 365, 646
SduI GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
SfaNI GCATC 2 cut(s) 54, 612
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
SpeI ACTAGT 1 cut(s) 1292
Sse9I AATT 2 cut(s) 1314, 1618
SseBI AGGCCT 1 cut(s) 227
SspMI CTAG 4 cut(s) 1293, 1446, 1491, 1629
SstI GAGCTC 2 cut(s) 39, 219
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 135, 294, 363, 644
StyI CCWWGG 1 cut(s) 1326
TaaI ACNGT 2 cut(s) 386, 1598
TaiI ACGT 4 cut(s) 237, 393, 560, 1347
TaqI TCGA 6 cut(s) 24, 48, 72, 78, 99, 977
TasI AATT 2 cut(s) 1314, 1618
TatI WGTACW 1 cut(s) 1442
TauI GCSGC 3 cut(s) 448, 469, 593
Tru1I TTAA 2 cut(s) 942, 1684
Tru9I TTAA 2 cut(s) 942, 1684
TscAI CASTG 4 cut(s) 462, 962, 1008, 1603
TseFI GTSAC 2 cut(s) 386, 1592
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 2 cut(s) 386, 1592
TspDTI ATGAA 3 cut(s) 1191, 1236, 1470
TspRI CASTG 4 cut(s) 462, 962, 1008, 1603
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 540
XapI RAATTY 1 cut(s) 1618
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 4 cut(s) 1293, 1446, 1491, 1629
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.