Rorug06G0452100

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018041
Physical Location & Seq
Reverse (-)
58119729 .. 58121198
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0452100.1

Sequence Viewer

Length: 1470 bp
ATGGTGGATGTGTGCGACTACAGTGGGAATGTAGACTATGCTAGCTTGCTATTCAAACAAGTTGTTGAGCCAAATGTGTTTCTGTTCAATGCGATGATCCGAGCTTATACGCATAATCATATATATGGTTTGGCGATAACTTTGTATAAGCAGATGCTGGGACACCCAGAATCTGGAAACCCTATTTTTCCAGACAAATTCACATTCCCATTTGTTATAAAATGTTGTGCAGGGCTATATTGTGAAGATTTGGGGAGGCAAGTTCATGGTCAAGTATGTAAAATTGGGCCAGAGTCGCATTTGCTGATTGAGAATGCACTGGTGGATTTTTATACCAAGTGTGATCATTTGAGGGATGCACATAAGGTGTTTGAGGAAATGACTGAGAGAGATGTGATTACTTGGAACAGTCTTCTTACTGGGTATGTTAGGTTGGGGCAGATGAGAAAGGCAAGAGCAGTGTTTGAGGAAATTCCTGACAAGACTGTTGTGTCTTGGACAGCAATGGTTTCAGGGTACACTCGAATCGGGTGTTATGGGGATGCTTTGGATATTTTTCGACGAATGCAAATGCTGGGTATTGAGCCTGATGAGATCAGTGTTGTTGCTGTTTTGCCAGCATGCTCCCAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACAGGTACTCGGATAAAAAGCGGCTACTACAGTCGGTGTCTGTGTGCAATGCCCTGATTGAAATGTATGTCAAATGCGGTTGCATTGATCAAGCTTGGCAGTTGTTTGATCAGATGTTGGAGAGGGATGTGATTTCTTGGAGTACCATGATTGCCGGACTGGCGAATAATGGTAAAGCTCGCGAAGCAGTTGAGCTCTTTCAAGAGATGCAGAGAGCGAAGATTGAACCCAATGGGATTACATTTCTTGGTCTTTTATCAGCCTGCAGCCATGCTGGTTTATGGAAGGAGGGACTCGAGTATTTTGACTCTATGAGATATGAGTATAAAATAGAGCCAGGAATTGAGCATTATGGTTGTTTAGTTGATCTTCTGGGACGTGCCGGGCACCTTGATCAGGCTCTCGACAAAATAAAGCAGATGCCAATGAAGCCAGACTCAAAGATTTGGGGCTCCTTGTTAAGCTCTTGCAGGACTTATTGCAATCTTGAGATTGCTCTAGATGCAATGGAGCAACTTCAAGAGCTTGAACCAGATGATGCAGGAAACTATGTACTACTTTCCAATATATATGCAGACCTGGGGAGGTGGGAGGATGTGTCGAGGATGAGGAAACTCATAAGAAGCAAAAGCATGAAGAAAACCCCAGGTTGCAGTTTGATCGAGGTTAACAATGCAGTTTTAGAATTCGTATCAGGGGATGATACAAAACCATTTGCAAAAGACATATTTTCCATGCTAGAGCTGCTGGTTTCACACCAAAGCATACCAGATGACAACATTGAAGCTGTGTCAGAGGATTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

489

Amino Acids

55.31

Weight (kDa)

5.18

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 130 - 161 6.4e-06 PPR repeat family
PPR PF01535 133 - 160 4.9e-06 PPR repeat
PPR_2 PF13041 162 - 208 7.3e-07 PPR repeat family
PPR PF01535 164 - 194 1.3e-06 PPR repeat
PPR_2 PF13041 232 - 263 1.5e-06 PPR repeat family
PPR_1 PF12854 260 - 291 1.4e-06 PPR repeat
PPR_3 PF13812 260 - 309 2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 262 - 310 2.2e-12 PPR repeat family
PPR PF01535 265 - 294 6.9e-08 PPR repeat
E_motif PF20431 380 - 442 8e-24 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13880
rosa_chinensis RchiOBHm_Chr7g0183051
rosa_laevigata RLG00000005083
rosa_multiflora Rmu_co8037088.1_g000001 Rmu_sc0000014.1_g000004 Rmu_ssc0000111.1_g000002
rosa_roxburghii Rroxscaffold_3G00270810
rosa_rugosa Rorug06G0452100
rosa_samantha Rh7AG055600 Rh7DG055100
rosa_wichuraiana Rw7G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AasI GACNNNNNNGTC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 1047
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 843
AciI CCGC 2 cut(s) 682, 738
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 3 cut(s) 197, 471, 1346
AfaI GTAC 4 cut(s) 518, 668, 805, 1215
AfiI CCNNNNNNNGG 2 cut(s) 173, 1057
AgsI TTSAA 8 cut(s) 55, 88, 722, 863, 887, 1181, 1190, 1445
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 3 cut(s) 997, 1239, 1306
Alw21I GWGCWC 2 cut(s) 640, 858
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 2 cut(s) 157, 173
Ama87I CYCGRG 1 cut(s) 956
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 927, 1405, 1464
ApoI RAATTY 3 cut(s) 197, 471, 1346
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 1045
AsuNHI GCTAGC 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 1050
BanI GGYRCC 1 cut(s) 1047
BanII GRGCYC 3 cut(s) 640, 858, 1115
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 640, 858
BbvI GCAGC 3 cut(s) 939, 1392, 1451
BcgI CGANNNNNNTGC 2 cut(s) 1303, 1337
BciT130I CCWGG 3 cut(s) 999, 1241, 1308
BclI TGATCA 4 cut(s) 343, 748, 769, 1054
BcnI CCSGG 1 cut(s) 1045
BfaI CTAG 3 cut(s) 42, 1160, 1400
BfmI CTRYAG 3 cut(s) 19, 689, 925
BglI GCCNNNNNGGC 1 cut(s) 821
BisI GCNGC 4 cut(s) 683, 928, 1406, 1465
BlsI GCNGC 4 cut(s) 684, 929, 1407, 1466
Bme1390I CCNGG 4 cut(s) 999, 1045, 1241, 1308
BmeT110I CYCGRG 1 cut(s) 956
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 1049, 1114
BmrFI CCNGG 4 cut(s) 999, 1045, 1241, 1308
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 7 cut(s) 144, 346, 532, 858, 1071, 1153, 1189
BmtI GCTAGC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 662, 1169
BpuMI CCSGG 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 1240, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 1244, 1274
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 1057
Bse1I ACTGG 3 cut(s) 324, 424, 825
Bse3DI GCAATG 3 cut(s) 510, 715, 1173
BseBI CCWGG 3 cut(s) 999, 1241, 1308
BseDI CCNNGG 2 cut(s) 1240, 1306
BseGI GGATG 7 cut(s) 13, 361, 547, 793, 1261, 1272, 1366
BseLI CCNNNNNNNGG 2 cut(s) 173, 1057
BseMI GCAATG 3 cut(s) 510, 715, 1173
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 3 cut(s) 324, 424, 825
BseSI GKGCMC 1 cut(s) 1050
BseXI GCAGC 3 cut(s) 939, 1392, 1451
BseYI CCCAGC 3 cut(s) 157, 574, 627
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 1047
BsiHKAI GWGCWC 2 cut(s) 640, 858
BsiHKCI CYCGRG 1 cut(s) 956
BsiSI CCGG 2 cut(s) 816, 1044
BslFI GGGAC 3 cut(s) 174, 966, 1050
BslI CCNNNNNNNGG 2 cut(s) 173, 1057
BsmFI GGGAC 3 cut(s) 174, 966, 1050
BsmI GAATGC 2 cut(s) 319, 570
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 956
Bsp1286I GDGCHC 4 cut(s) 640, 858, 1050, 1115
Bsp143I GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
Bsp68I TCGCGA 1 cut(s) 843
BspACI CCGC 2 cut(s) 682, 738
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 843
BspLI GGNNCC 2 cut(s) 1049, 1114
BspMAI CTGCAG 1 cut(s) 929
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 1047
BsrDI GCAATG 3 cut(s) 510, 715, 1173
BsrI ACTGG 3 cut(s) 324, 424, 825
BssECI CCNNGG 2 cut(s) 1240, 1306
BssMI GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
Bst2UI CCWGG 3 cut(s) 999, 1241, 1308
Bst4CI ACNGT 4 cut(s) 23, 410, 487, 693
BstC8I GCNNGC 6 cut(s) 43, 47, 618, 622, 841, 925
BstDEI CTNAG 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 7 cut(s) 13, 361, 547, 793, 1261, 1272, 1366
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 8 cut(s) 99, 346, 597, 751, 772, 1030, 1057, 1323
BstMBI GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
BstMWI GCNNNNNNNGC 6 cut(s) 295, 821, 845, 1090, 1163, 1405
BstNI CCWGG 3 cut(s) 999, 1241, 1308
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 4 cut(s) 997, 1043, 1239, 1306
BstSFI CTRYAG 3 cut(s) 19, 689, 925
BstSLI GKGCMC 1 cut(s) 1050
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 939, 1392, 1451
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 7 cut(s) 13, 361, 547, 793, 1261, 1272, 1366
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 28, 317, 465, 604
BtuMI TCGCGA 1 cut(s) 843
Cac8I GCNNGC 6 cut(s) 43, 47, 618, 622, 841, 925
CaiI CAGNNNCTG 2 cut(s) 157, 173
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 4 cut(s) 517, 667, 804, 1214
CviAII CATG 6 cut(s) 266, 621, 808, 932, 1294, 1396
CviQI GTAC 4 cut(s) 517, 667, 804, 1214
DdeI CTNAG 1 cut(s) 384
DpnI GATC 8 cut(s) 98, 345, 596, 750, 771, 1029, 1056, 1322
DpnII GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
DrdI GACNNNNNNGTC 1 cut(s) 490
DseDI GACNNNNNNGTC 1 cut(s) 490
Ecl136II GAGCTC 2 cut(s) 638, 856
Eco24I GRGCYC 3 cut(s) 640, 858, 1115
Eco53kI GAGCTC 2 cut(s) 638, 856
Eco88I CYCGRG 1 cut(s) 956
EcoICRI GAGCTC 2 cut(s) 638, 856
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 3 cut(s) 997, 1239, 1306
EcoT38I GRGCYC 3 cut(s) 640, 858, 1115
FaeI CATG 6 cut(s) 269, 624, 811, 935, 1297, 1399
FaqI GGGAC 3 cut(s) 174, 966, 1050
FatI CATG 6 cut(s) 265, 620, 807, 931, 1293, 1395
FbaI TGATCA 4 cut(s) 343, 748, 769, 1054
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 683, 928, 1406, 1465
FokI GGATG 7 cut(s) 20, 368, 554, 800, 1268, 1279, 1373
FriOI GRGCYC 3 cut(s) 640, 858, 1115
Fsp4HI GCNGC 4 cut(s) 683, 928, 1406, 1465
FspBI CTAG 3 cut(s) 42, 1160, 1400
GluI GCNGC 4 cut(s) 683, 928, 1406, 1465
GsaI CCCAGC 3 cut(s) 161, 578, 631
HaeIII GGCC 1 cut(s) 289
HapII CCGG 2 cut(s) 816, 1044
Hin1II CATG 6 cut(s) 269, 624, 811, 935, 1297, 1399
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 7 cut(s) 170, 293, 525, 658, 954, 968, 1097
HpaI GTTAAC 1 cut(s) 1330
HpaII CCGG 2 cut(s) 816, 1044
Hpy166II GTNNAC 3 cut(s) 34, 519, 1330
Hpy188I TCNGA 4 cut(s) 101, 673, 774, 1456
Hpy8I GTNNAC 3 cut(s) 34, 519, 1330
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 4 cut(s) 23, 410, 487, 693
HpyCH4IV ACGT 1 cut(s) 1039
HpyF10VI GCNNNNNNNGC 6 cut(s) 295, 821, 845, 1090, 1163, 1405
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 6 cut(s) 269, 624, 811, 935, 1297, 1399
Ksp22I TGATCA 4 cut(s) 343, 748, 769, 1054
KspAI GTTAAC 1 cut(s) 1330
Kzo9I GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
LmnI GCTCC 4 cut(s) 629, 635, 1118, 1171
Lsp1109I GCAGC 3 cut(s) 939, 1392, 1451
LweI GCATC 7 cut(s) 144, 346, 532, 858, 1071, 1153, 1189
MaeI CTAG 3 cut(s) 42, 1160, 1400
MaeII ACGT 1 cut(s) 1039
MalI GATC 8 cut(s) 98, 345, 596, 750, 771, 1029, 1056, 1322
MboI GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
MboII GAAGA 5 cut(s) 257, 404, 892, 1022, 1309
MhlI GDGCHC 4 cut(s) 640, 858, 1050, 1115
MluCI AATT 5 cut(s) 197, 282, 471, 1002, 1346
MlyI GAGTC 4 cut(s) 302, 948, 962, 1091
MmeI TCCRAC 1 cut(s) 759
MseI TTAA 2 cut(s) 1121, 1329
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 816, 1044
MspR9I CCNGG 4 cut(s) 999, 1045, 1241, 1308
Mva1269I GAATGC 2 cut(s) 319, 570
MvaI CCWGG 3 cut(s) 999, 1241, 1308
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 6 cut(s) 295, 821, 845, 1090, 1163, 1405
NciI CCSGG 1 cut(s) 1045
NdeII GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 6 cut(s) 269, 624, 811, 935, 1297, 1399
NlaIV GGNNCC 2 cut(s) 1049, 1114
NruI TCGCGA 1 cut(s) 843
NspI RCATGY 1 cut(s) 624
PaeI GCATGC 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 956
PctI GAATGC 2 cut(s) 319, 570
PfeI GAWTC 3 cut(s) 170, 525, 658
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 4 cut(s) 684, 929, 1407, 1466
PleI GAGTC 4 cut(s) 301, 948, 962, 1091
PpsI GAGTC 4 cut(s) 301, 948, 962, 1091
PsiI TTATAA 1 cut(s) 218
Psp124BI GAGCTC 2 cut(s) 640, 858
Psp6I CCWGG 3 cut(s) 997, 1239, 1306
PspFI CCCAGC 3 cut(s) 157, 574, 627
PspGI CCWGG 3 cut(s) 997, 1239, 1306
PspN4I GGNNCC 2 cut(s) 1049, 1114
PspPI GGNCC 1 cut(s) 287
PspXI VCTCGAGB 1 cut(s) 956
PstI CTGCAG 1 cut(s) 929
PstNI CAGNNNCTG 2 cut(s) 157, 173
RruI TCGCGA 1 cut(s) 843
RsaI GTAC 4 cut(s) 518, 668, 805, 1215
RsaNI GTAC 4 cut(s) 517, 667, 804, 1214
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 2 cut(s) 640, 858
SaqAI TTAA 2 cut(s) 1121, 1329
SatI GCNGC 4 cut(s) 683, 928, 1406, 1465
Sau3AI GATC 8 cut(s) 96, 343, 594, 748, 769, 1027, 1054, 1320
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 4 cut(s) 302, 948, 962, 1091
ScrFI CCNGG 4 cut(s) 999, 1045, 1241, 1308
SduI GDGCHC 4 cut(s) 640, 858, 1050, 1115
SfaNI GCATC 7 cut(s) 144, 346, 532, 858, 1071, 1153, 1189
SfcI CTRYAG 3 cut(s) 19, 689, 925
Sfr274I CTCGAG 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 956
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 3 cut(s) 641, 956, 1148
SmoI CTYRAG 3 cut(s) 641, 956, 1148
SphI GCATGC 1 cut(s) 624
Sse9I AATT 5 cut(s) 197, 282, 471, 1002, 1346
SsiI CCGC 2 cut(s) 682, 738
SspMI CTAG 3 cut(s) 42, 1160, 1400
SstI GAGCTC 2 cut(s) 640, 858
StyD4I CCNGG 4 cut(s) 997, 1043, 1239, 1306
TaaI ACNGT 4 cut(s) 23, 410, 487, 693
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 6 cut(s) 523, 559, 957, 1065, 1262, 1323
TasI AATT 5 cut(s) 197, 282, 471, 1002, 1346
TatI WGTACW 1 cut(s) 1213
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 3 cut(s) 170, 525, 658
Tru1I TTAA 2 cut(s) 1121, 1329
Tru9I TTAA 2 cut(s) 1121, 1329
TscAI CASTG 4 cut(s) 28, 324, 465, 604
TseI GCWGC 3 cut(s) 927, 1405, 1464
TspDTI ATGAA 3 cut(s) 254, 1103, 1310
TspRI CASTG 4 cut(s) 28, 324, 465, 604
Van91I CCANNNNNTGG 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 1055
XapI RAATTY 3 cut(s) 197, 471, 1346
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 1 cut(s) 624
XhoI CTCGAG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 3 cut(s) 42, 1160, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.