Rmu_co8037088.1_g000001

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8037088.1
OG0018041
Physical Location & Seq
Forward (+)
1 .. 550
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8037088.1_g000001.1.cds

Sequence Viewer

Length: 550 bp
ttgcttttcaagaggagaagaagttgccgccggattcggtgatcaagccgccggagataggggacgagcacagaccctatccggcggtggtgcagttctacaactactggctcaactttgggaccataatggacttcacgtgggaggagccacacgacgagtacgacttggcggcggcgcctaccaagaagggagtggcggtgatgcggaggaagaacataaaggccaggaagagggctaagaatgagtataataataaagtgaggaggttggcgcagaatgtgaggaggagggacattagggttttggagatgatggcgcacagggaggaggagaggaagaaggagatggaggaggagaaggagaggaggaggaggttgaagaaggagaagatggagaaggctttggagtttgaggagccggagtggacgaagcctgtggagaggaagaggaagtatggtgtggaggagaaggaggaagaggagagggaggaatgggagtgcgtggtgtgtaggaaggagtttaagagcgagaagcagtgcttgaatca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

182

Amino Acids

22.34

Weight (kDa)

8.82

Isoelectric Point (pI)

74.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13880
rosa_chinensis RchiOBHm_Chr7g0183051
rosa_laevigata RLG00000005083
rosa_multiflora Rmu_co8037088.1_g000001 Rmu_sc0000014.1_g000004 Rmu_ssc0000111.1_g000002
rosa_roxburghii Rroxscaffold_3G00270810
rosa_rugosa Rorug06G0452100
rosa_samantha Rh7AG055600 Rh7DG055100
rosa_wichuraiana Rw7G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AciI CCGC 7 cut(s) 28, 49, 85, 172, 175, 199, 207
AcvI CACGTG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 58, 233
AgsI TTSAA 3 cut(s) 10, 381, 546
AjnI CCWGG 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 71
AoxI GGCC 1 cut(s) 224
AspLEI GCGC 3 cut(s) 180, 276, 321
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 51, 213
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 177
BbrPI CACGTG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 3 cut(s) 309, 342, 387
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 4 cut(s) 28, 49, 173, 176
BlsI GCNGC 4 cut(s) 29, 50, 174, 177
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 4 cut(s) 123, 149, 179, 419
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 178
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 185, 215, 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 233
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 58, 233
BseNI ACTGG 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 4 cut(s) 31, 52, 82, 421
BslFI GGGAC 3 cut(s) 76, 135, 307
BslI CCNNNNNNNGG 2 cut(s) 58, 233
BsmFI GGGAC 3 cut(s) 76, 135, 307
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 41
BspACI CCGC 7 cut(s) 28, 49, 85, 172, 175, 199, 207
BspANI GGCC 1 cut(s) 226
BspLI GGNNCC 4 cut(s) 123, 149, 179, 419
BspT107I GGYRCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 112
BssMI GATC 1 cut(s) 41
BssNI GRCGYC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 3 cut(s) 226, 442, 473
BstACI GRCGYC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 3 cut(s) 180, 276, 321
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BsuRI GGCC 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 544
CfoI GCGC 3 cut(s) 180, 276, 321
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 8 cut(s) 48, 111, 150, 226, 238, 403, 420, 435
CviKI_1 RGCY 8 cut(s) 48, 111, 150, 226, 238, 403, 420, 435
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 239
DinI GGCGCC 1 cut(s) 179
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 226, 442, 473
EarI CTCTTC 3 cut(s) 226, 442, 473
Eco47I GGWCC 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
FaiI YATR 4 cut(s) 127, 220, 251, 458
FalI AAGNNNNNCTT 1 cut(s) 526
FaqI GGGAC 3 cut(s) 76, 135, 307
FbaI TGATCA 1 cut(s) 41
Fnu4HI GCNGC 4 cut(s) 28, 49, 173, 176
Fsp4HI GCNGC 4 cut(s) 28, 49, 173, 176
GlaI GCGC 3 cut(s) 179, 275, 320
GluI GCNGC 4 cut(s) 28, 49, 173, 176
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 226
HapII CCGG 4 cut(s) 31, 52, 82, 421
HhaI GCGC 3 cut(s) 180, 276, 321
Hin1I GRCGYC 1 cut(s) 178
Hin6I GCGC 3 cut(s) 178, 274, 319
HinP1I GCGC 3 cut(s) 178, 274, 319
HinfI GANTC 2 cut(s) 34, 546
HpaII CCGG 4 cut(s) 31, 52, 82, 421
HphI GGTGA 2 cut(s) 51, 213
Hpy166II GTNNAC 1 cut(s) 428
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 7 cut(s) 183, 336, 354, 378, 393, 465, 510
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 178
HspAI GCGC 3 cut(s) 178, 274, 319
KasI GGCGCC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 41
Kzo9I GATC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 147, 417
LpnPI CCDG 9 cut(s) 44, 65, 93, 95, 213, 240, 309, 434, 449
LweI GCATC 1 cut(s) 194
MaeII ACGT 1 cut(s) 139
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 8 cut(s) 30, 225, 243, 351, 393, 402, 459, 490
MhlI GDGCHC 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 178
MseI TTAA 1 cut(s) 524
MspI CCGG 4 cut(s) 31, 52, 82, 421
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
NarI GGCGCC 1 cut(s) 178
NdeII GATC 1 cut(s) 41
NlaIV GGNNCC 4 cut(s) 123, 149, 179, 419
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 2 cut(s) 34, 546
PkrI GCNGC 4 cut(s) 29, 50, 174, 177
PluTI GGCGCC 1 cut(s) 181
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 226
PspCI CACGTG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 4 cut(s) 123, 149, 179, 419
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 28, 49, 173, 176
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 71
SetI ASST 3 cut(s) 142, 271, 379
SfaNI GCATC 1 cut(s) 194
SfoI GGCGCC 1 cut(s) 179
SinI GGWCC 1 cut(s) 122
SsiI CCGC 7 cut(s) 28, 49, 85, 172, 175, 199, 207
SspDI GGCGCC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 142
TauI GCSGC 4 cut(s) 30, 51, 175, 178
TfiI GAWTC 2 cut(s) 34, 546
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 544
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.