FvH4_5g14470

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8193316 .. 8197902
4587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14470.t5

Sequence Viewer

Length: 1410 bp
ATGAAGCAGCTGTTGTCTGGACTTGATCATTGTCACTCGCGGGGTGTAATGCATCGCGACATAAAAGGATCAAATCTTCTGGTGAATAATGAAGGAATTTTGAAGATGGCTGATTTTGGACTGGCAAACTTCTGTAATTCTGGGAATAGGCAACCCCTTACCAGTCGTGTAGTCACTCTGTGGTATCGTCCTCCTGAACTTTTGCTTGGATCGACTTCCTATGGAGCTTATATCGACCTTTGGAGTGTTGGCTGTGCATTTGCCGAACTCCTGGTTGGGAAAAATGTTCTTCAAGGGCGAACAGAGGTTGAACAACTACACAAGATTTTCAAGCTCTGCGGCACCCCGCCGGAAGAATACTGGAAAAAGTCCAAACTTCCACATGCAACTCTATTTAAACCCCAACAAGCTTATGACAGTACTCTGCAGGAGACCTTTAAAGATTTGCCAGCAGCCACTTTTAACCTATTAGAGACTCTTCTTTCTGTAGAACCAAACAAGCGTGGGACTGCCTCCTCTGCTCTTGCATCTGAGTATTTCAAAACGAAGCCTTATGCCTGTCATCCATCAAGCTTGCCAATTTACCCACCTAGCAAAGAAATTGACGCGAAAAATCGGGAGGAGGCAAAGAGGAAAAAGATTGGTGGTAGACTTCGTGGAGAAACAAGAAAGTCAACAAGAAAATCACTCGGAATAAGTAAATTGGCTCCAGTCGAGGACATCGCAACCCAAATCCAAGGTTCATATAAAATTAATGGCACTAATGGACACATTACCAAGCAAGAAAATGGTATCATAAGCAGGGAGTTGCCAAAGCCACCAGCTTCTAAAGCAGAAGAGGCTTTACATGTCAAGAATGCATCTCAAGGAGATGTTCCCTTCTCTGGACCATTAGAGGTTTCTACATCAAGTGGCTTCGCATGGGCAAAAAGACGAAGAGATGATGCTTCTAGAAGATCTCATACTCGATCTATCTCAAAAGGACACATATTTAACACGGTAGAACCTTCAATTGCAGTGCATACAAGGAAGAACTTCGACTCTAAGACACATGAAAATGGTGAATATAGAGGGTGTACCGACTCTAGAGGATATGATTCATATGAGGTTGCAAAGCTAGCAATGATGAATCAATGGGGAAAGCTTGGACGTCCAGATTCATTTGATGCGTCTGATGGGTATCACTCGCAGGAATTATCGTTGGCACTTTATCAGAGAGAGGAAAGGGTAGCTGCTACTAAAAGTGATCTGAGTTTTCAATTTCACGATGATGGAGACAAGGTTGAATTTTCAGGACCCTTGTTATCTCAACCATATAAAGTTGATGAATTTTTAGAAAGGCATGAGCGCCAGATCAGAAGGGCGACGCGGAACTCATGGTTCTATAGAGGTAAGAAGCAAGGGAAGTGA

Protein Analysis

470

Amino Acids

52.7

Weight (kDa)

9.43

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 241 4.5e-53 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 172 1.1e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1153
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 649
AccII CGCG 4 cut(s) 40, 57, 608, 1369
AciI CCGC 4 cut(s) 40, 339, 347, 1369
AclWI GGATC 2 cut(s) 76, 217
AcsI RAATTY 3 cut(s) 96, 1286, 1328
AcyI GRCGYC 1 cut(s) 1150
AdeI CACNNNGTG 1 cut(s) 180
AfaI GTAC 2 cut(s) 421, 1078
AfiI CCNNNNNNNGG 1 cut(s) 884
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 8 cut(s) 103, 293, 311, 331, 541, 1011, 1259, 1286
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 4 cut(s) 189, 221, 258, 290
AluBI AGCT 9 cut(s) 10, 227, 334, 410, 573, 824, 1117, 1144, 1232
AluI AGCT 9 cut(s) 10, 227, 334, 410, 573, 824, 1117, 1144, 1232
Alw26I GTCTC 3 cut(s) 425, 467, 1269
AlwI GGATC 2 cut(s) 76, 217
ApeKI GCWGC 3 cut(s) 7, 452, 1232
ApoI RAATTY 3 cut(s) 96, 1286, 1328
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 1 cut(s) 1350
AspS9I GGNCC 2 cut(s) 887, 1295
AsuHPI GGTGA 2 cut(s) 94, 1073
AsuNHI GCTAGC 1 cut(s) 1117
AvaII GGWCC 2 cut(s) 887, 1295
BanI GGYRCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 4 cut(s) 828, 860, 946, 978
BbvI GCAGC 3 cut(s) 19, 464, 1219
BccI CCATC 4 cut(s) 100, 574, 1169, 1265
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 3 cut(s) 425, 467, 1269
BfaI CTAG 4 cut(s) 591, 951, 1086, 1118
BfmI CTRYAG 3 cut(s) 425, 486, 1384
BfoI RGCGCY 1 cut(s) 1351
BglII AGATCT 1 cut(s) 956
BisI GCNGC 4 cut(s) 8, 340, 453, 1233
BlsI GCNGC 4 cut(s) 9, 341, 454, 1234
BmcAI AGTACT 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 2 cut(s) 887, 1295
BmgT120I GGNCC 2 cut(s) 887, 1295
BmiI GGNNCC 3 cut(s) 343, 708, 1297
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 5 cut(s) 61, 536, 869, 934, 1156
BmtI GCTAGC 1 cut(s) 1121
BpmI CTGGAG 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 1150
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 736
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bsc4I CCNNNNNNNGG 1 cut(s) 884
Bse1I ACTGG 4 cut(s) 126, 162, 365, 710
Bse3DI GCAATG 1 cut(s) 1128
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 1 cut(s) 884
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 2 cut(s) 522, 1241
BseNI ACTGG 4 cut(s) 126, 162, 365, 710
BseRI GAGGAG 2 cut(s) 505, 635
BseXI GCAGC 3 cut(s) 19, 464, 1219
Bsh1236I CGCG 4 cut(s) 40, 57, 608, 1369
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 884
BsmAI GTCTC 3 cut(s) 425, 467, 1269
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 862
Bso31I GGTCTC 1 cut(s) 425
Bsp143I GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 4 cut(s) 40, 339, 347, 1369
BspCNI CTCAG 2 cut(s) 523, 1242
BspFNI CGCG 4 cut(s) 40, 57, 608, 1369
BspLI GGNNCC 3 cut(s) 343, 708, 1297
BspMAI CTGCAG 1 cut(s) 429
BspOI GCTAGC 1 cut(s) 1121
BspPI GGATC 2 cut(s) 76, 217
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 4 cut(s) 126, 162, 365, 710
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
BssNI GRCGYC 1 cut(s) 1150
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 419, 1000
Bst6I CTCTTC 3 cut(s) 483, 831, 931
BstACI GRCGYC 1 cut(s) 1150
BstC8I GCNNGC 3 cut(s) 450, 575, 1119
BstDEI CTNAG 3 cut(s) 531, 1044, 1250
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 4 cut(s) 40, 57, 608, 1369
BstH2I RGCGCY 1 cut(s) 1351
BstHHI GCGC 1 cut(s) 1350
BstKTI GATC 7 cut(s) 28, 71, 212, 959, 971, 1249, 1356
BstMAI GTCTC 3 cut(s) 425, 467, 1269
BstMBI GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 518, 830, 839, 1118
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 2 cut(s) 386, 851
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 3 cut(s) 425, 486, 1384
BstUI CGCG 4 cut(s) 40, 57, 608, 1369
BstV1I GCAGC 3 cut(s) 19, 464, 1219
BstX2I RGATCY 1 cut(s) 956
BstYI RGATCY 1 cut(s) 956
BtgZI GCGATG 2 cut(s) 38, 706
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 1 cut(s) 1023
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 450, 575, 1119
CfoI GCGC 1 cut(s) 1350
Cfr13I GGNCC 2 cut(s) 887, 1295
CseI GACGC 3 cut(s) 614, 1158, 1375
Csp6I GTAC 2 cut(s) 420, 1077
CviAII CATG 6 cut(s) 383, 848, 921, 1052, 1343, 1377
CviQI GTAC 2 cut(s) 420, 1077
DdeI CTNAG 3 cut(s) 531, 1044, 1250
DpnI GATC 7 cut(s) 27, 70, 211, 958, 970, 1248, 1355
DpnII GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
DraI TTTAAA 2 cut(s) 397, 439
DraIII CACNNNGTG 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 483, 831, 931
EarI CTCTTC 3 cut(s) 483, 831, 931
Eco130I CCWWGG 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 887, 1295
EcoO109I RGGNCCY 1 cut(s) 1295
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 736
EcoT22I ATGCAT 2 cut(s) 54, 862
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 6 cut(s) 386, 851, 924, 1055, 1346, 1380
FaqI GGGAC 1 cut(s) 520
FatI CATG 6 cut(s) 382, 847, 920, 1051, 1342, 1376
FauI CCCGC 2 cut(s) 33, 354
FauNDI CATATG 1 cut(s) 1102
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 8, 340, 453, 1233
FokI GGATG 1 cut(s) 549
Fsp4HI GCNGC 4 cut(s) 8, 340, 453, 1233
FspBI CTAG 4 cut(s) 591, 951, 1086, 1118
GlaI GCGC 1 cut(s) 1349
GluI GCNGC 4 cut(s) 8, 340, 453, 1233
GsuI CTGGAG 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 1351
HapII CCGG 1 cut(s) 350
HgaI GACGC 3 cut(s) 614, 1158, 1375
HhaI GCGC 1 cut(s) 1350
Hin1I GRCGYC 1 cut(s) 1150
Hin1II CATG 6 cut(s) 386, 851, 924, 1055, 1346, 1380
Hin6I GCGC 1 cut(s) 1348
HinP1I GCGC 1 cut(s) 1348
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 3 cut(s) 408, 571, 1142
HinfI GANTC 6 cut(s) 475, 1040, 1082, 1097, 1129, 1157
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 94, 1073
Hpy166II GTNNAC 3 cut(s) 650, 675, 1077
Hpy188I TCNGA 6 cut(s) 532, 692, 1174, 1215, 1251, 1358
Hpy8I GTNNAC 3 cut(s) 650, 675, 1077
Hpy99I CGWCG 1 cut(s) 1369
HpyAV CCTTC 4 cut(s) 86, 889, 1017, 1353
HpyCH4III ACNGT 2 cut(s) 419, 1000
HpyCH4IV ACGT 1 cut(s) 1150
HpyCH4V TGCA 9 cut(s) 52, 257, 386, 427, 527, 860, 1016, 1021, 1112
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 830, 839, 1118
HpyF3I CTNAG 3 cut(s) 531, 1044, 1250
HpySE526I ACGT 1 cut(s) 1150
Hsp92I GRCGYC 1 cut(s) 1150
Hsp92II CATG 6 cut(s) 386, 851, 924, 1055, 1346, 1380
HspAI GCGC 1 cut(s) 1348
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
LmnI GCTCC 2 cut(s) 224, 712
Lsp1109I GCAGC 3 cut(s) 19, 464, 1219
LweI GCATC 5 cut(s) 61, 536, 869, 934, 1156
MaeI CTAG 4 cut(s) 591, 951, 1086, 1118
MaeII ACGT 1 cut(s) 1150
MaeIII GTNAC 2 cut(s) 32, 172
MalI GATC 7 cut(s) 27, 70, 211, 958, 970, 1248, 1355
MboI GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
MboII GAAGA 9 cut(s) 68, 115, 281, 365, 470, 848, 948, 966, 1042
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 1 cut(s) 956
MlyI GAGTC 3 cut(s) 469, 1034, 1076
Mph1103I ATGCAT 2 cut(s) 54, 862
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 5 cut(s) 396, 438, 462, 753, 993
MslI CAYNNNNRTG 2 cut(s) 1056, 1269
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 4 cut(s) 40, 57, 608, 1369
MwoI GCNNNNNNNGC 4 cut(s) 518, 830, 839, 1118
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
NheI GCTAGC 1 cut(s) 1117
NlaIII CATG 6 cut(s) 386, 851, 924, 1055, 1346, 1380
NlaIV GGNNCC 3 cut(s) 343, 708, 1297
NmuCI GTSAC 2 cut(s) 32, 172
NruI TCGCGA 1 cut(s) 57
NsiI ATGCAT 2 cut(s) 54, 862
NspI RCATGY 2 cut(s) 386, 851
PciI ACATGT 1 cut(s) 847
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 3 cut(s) 1097, 1129, 1157
PkrI GCNGC 4 cut(s) 9, 341, 454, 1234
PleI GAGTC 3 cut(s) 469, 1034, 1076
PpsI GAGTC 3 cut(s) 469, 1034, 1076
PpuMI RGGWCCY 1 cut(s) 1295
PscI ACATGT 1 cut(s) 847
PshBI ATTAAT 1 cut(s) 753
Psp5II RGGWCCY 1 cut(s) 1295
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 343, 708, 1297
PspPI GGNCC 2 cut(s) 887, 1295
PspPPI RGGWCCY 1 cut(s) 1295
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 10
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 2 cut(s) 421, 1078
RsaNI GTAC 2 cut(s) 420, 1077
RseI CAYNNNNRTG 2 cut(s) 1056, 1269
SaqAI TTAA 5 cut(s) 396, 438, 462, 753, 993
SatI GCNGC 4 cut(s) 8, 340, 453, 1233
Sau3AI GATC 7 cut(s) 25, 68, 209, 956, 968, 1246, 1353
Sau96I GGNCC 2 cut(s) 887, 1295
ScaI AGTACT 1 cut(s) 421
SchI GAGTC 3 cut(s) 469, 1034, 1076
ScrFI CCNGG 1 cut(s) 272
SfaNI GCATC 5 cut(s) 61, 536, 869, 934, 1156
SfcI CTRYAG 3 cut(s) 425, 486, 1384
SinI GGWCC 2 cut(s) 887, 1295
SmiMI CAYNNNNRTG 2 cut(s) 1056, 1269
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
SsiI CCGC 4 cut(s) 40, 339, 347, 1369
SspMI CTAG 4 cut(s) 591, 951, 1086, 1118
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 2 cut(s) 419, 1000
TaiI ACGT 1 cut(s) 1153
TaqI TCGA 5 cut(s) 212, 234, 714, 967, 1038
TatI WGTACW 1 cut(s) 419
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 3 cut(s) 1097, 1129, 1157
Tru1I TTAA 5 cut(s) 396, 438, 462, 753, 993
Tru9I TTAA 5 cut(s) 396, 438, 462, 753, 993
TscAI CASTG 1 cut(s) 1023
TseFI GTSAC 2 cut(s) 32, 172
TseI GCWGC 3 cut(s) 7, 452, 1232
Tsp45I GTSAC 2 cut(s) 32, 172
TspDTI ATGAA 8 cut(s) 17, 105, 732, 1068, 1089, 1142, 1149, 1341
TspRI CASTG 1 cut(s) 1023
VpaK11BI GGWCC 2 cut(s) 887, 1295
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 3 cut(s) 96, 1286, 1328
XbaI TCTAGA 2 cut(s) 950, 1085
XceI RCATGY 2 cut(s) 386, 851
XmiI GTMKAC 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 4 cut(s) 591, 951, 1086, 1118
ZraI GACGTC 1 cut(s) 1151
ZrmI AGTACT 1 cut(s) 421
Zsp2I ATGCAT 2 cut(s) 54, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.