Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Reverse (-)

8581386 .. 8582419

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGAAGGGTTCCTTGTTGCTCAAATAAGGTTGGTCTGCACAGAGGTCCTTGGACTCCCAGAGAGGACACATTGCTCACCAAATATGTTGAAGCTCATGGTCATGGCCTTTGGAGAACCTTGCCCAAAAAAGCTGGTCTCCTTAGGTGTGGGAAGAGTTGCAGGCTAAGATGGATGAGCTACCTGAGGCCAGACATCAAGAGAGGAAACATTACTCCAGACGAAGATAACCTAATTATCCGAATGCATTCACTTCTCGGAAACCGCTGGTCTCTCATAGCAGGTAGACTTCCAGGTCGAACCGATAACGATATCAAAAACTACTGGAACACCAATCTCAGAAAAAGGCTCCTGAGCGAAGGAACTGACCCGAGCACGCACCAAAAACTATCCCAGCCTCCGGCTTCCAAGGAAAACAAGAGTAAGACGCAGCAGAACCACAAAGCCAAGAACAAGAACAATAATGAAAAAAGCTTAGTGCCCGAAAAGCCTAAGGTCCATATCCCCAATCCCACCAGGGTCACTTCCTTTGTTAACCTACCAAGAAAAGATAGATTTACCACAGCAAGCACTGCACTGTCTTCTAGCCAGGATGAAGTTCTGGATCATGTTAACAATGTTGTTATTCCTTGGTCGGATTTCAAAGAGGGTGGGGTGGTCTTCTCTGACTGTGATTGGTCGTCGTCTAATTTCGAGTGTGATCAGTCTCGAATCATACCTAATGTTGCAGCTGGTGGTGATGACTACACTGGGGAAAATATATACGAGGAATATCTGCAGGCCCTTCTGAATACTACAGATCAAGATCAGAACTATCCAGTTGAGTTAGACTCGTTTGCTGAGTCACTGCTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

286

Amino Acids

32.31

Weight (kDa)

8.81

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	4.1e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	9.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 116	3.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	612
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	92, 643
AjnI	CCWGG	3 cut(s)	292, 515, 588
AluBI	AGCT	5 cut(s)	95, 134, 180, 474, 731
AluI	AGCT	5 cut(s)	95, 134, 180, 474, 731
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	3 cut(s)	143, 276, 711
AlwI	GGATC	1 cut(s)	612
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	106, 188, 780
ApeKI	GCWGC	2 cut(s)	430, 728
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	47, 496, 781
AsuHPI	GGTGA	2 cut(s)	70, 749
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	47, 496
AxyI	CCTNAGG	3 cut(s)	143, 185, 492
BaeGI	GKGCMC	1 cut(s)	483
BbsI	GAAGAC	2 cut(s)	573, 652
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	442, 740
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	3 cut(s)	294, 517, 590
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	3 cut(s)	143, 276, 711
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	2 cut(s)	776, 795
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	431, 729
BlsI	GCNGC	2 cut(s)	432, 730
Bme1390I	CCNGG	3 cut(s)	294, 517, 590
Bme18I	GGWCC	2 cut(s)	47, 496
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	47, 496, 781
BmiI	GGNNCC	2 cut(s)	12, 350
BmrFI	CCNGG	3 cut(s)	294, 517, 590
BmrI	ACTGGG	1 cut(s)	759
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	2 cut(s)	573, 652
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	804
BsaI	GGTCTC	2 cut(s)	143, 276
BsaJI	CCNNGG	4 cut(s)	50, 408, 516, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	3 cut(s)	329, 754, 818
Bse21I	CCTNAGG	3 cut(s)	143, 185, 492
Bse3DI	GCAATG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	294, 517, 590
BseDI	CCNNGG	4 cut(s)	50, 408, 516, 629
BseGI	GGATG	2 cut(s)	180, 598
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	4 cut(s)	176, 344, 352, 831
BseNI	ACTGG	3 cut(s)	329, 754, 818
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	442, 740
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	2 cut(s)	23, 558
BshFI	GGCC	3 cut(s)	108, 190, 782
BsiHKAI	GWGCWC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	3 cut(s)	143, 276, 711
BsmI	GAATGC	2 cut(s)	247, 249
BsnI	GGCC	3 cut(s)	108, 190, 782
Bso31I	GGTCTC	2 cut(s)	143, 276
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	377, 483
Bsp143I	GATC	5 cut(s)	604, 700, 799, 805, 852
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	3 cut(s)	108, 190, 782
BspCNI	CTCAG	4 cut(s)	177, 345, 351, 832
BspLI	GGNNCC	2 cut(s)	12, 350
BspMAI	CTGCAG	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	612
BspTNI	GGTCTC	2 cut(s)	143, 276
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	329, 754, 818
BssECI	CCNNGG	4 cut(s)	50, 408, 516, 629
BssMI	GATC	5 cut(s)	604, 700, 799, 805, 852
BssT1I	CCWWGG	3 cut(s)	50, 408, 629
Bst2UI	CCWGG	3 cut(s)	294, 517, 590
Bst4CI	ACNGT	2 cut(s)	579, 671
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	164, 377, 568, 780
BstDEI	CTNAG	8 cut(s)	143, 167, 185, 338, 353, 475, 492, 840
BstF5I	GGATG	2 cut(s)	180, 598
BstKTI	GATC	5 cut(s)	607, 703, 802, 808, 855
BstMAI	GTCTC	3 cut(s)	143, 276, 711
BstMBI	GATC	5 cut(s)	604, 700, 799, 805, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 572
BstNI	CCWGG	3 cut(s)	294, 517, 590
BstSCI	CCNGG	3 cut(s)	292, 515, 588
BstSFI	CTRYAG	2 cut(s)	776, 795
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	442, 740
BstV2I	GAAGAC	2 cut(s)	573, 652
Bsu36I	CCTNAGG	3 cut(s)	143, 185, 492
BsuRI	GGCC	3 cut(s)	108, 190, 782
BtsCI	GGATG	2 cut(s)	180, 598
BtsI	GCAGTG	2 cut(s)	570, 845
BtsIMutI	CAGTG	4 cut(s)	570, 575, 747, 845
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	4 cut(s)	164, 377, 568, 780
Cfr13I	GGNCC	3 cut(s)	47, 496, 781
CseI	GACGC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	3 cut(s)	98, 104, 608
DdeI	CTNAG	8 cut(s)	143, 167, 185, 338, 353, 475, 492, 840
DpnI	GATC	5 cut(s)	606, 702, 801, 807, 854
DpnII	GATC	5 cut(s)	604, 700, 799, 805, 852
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	3 cut(s)	50, 408, 629
Eco31I	GGTCTC	2 cut(s)	143, 276
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	47, 496
Eco81I	CCTNAGG	3 cut(s)	143, 185, 492
Eco88I	CYCGRG	1 cut(s)	370
EcoO109I	RGGNCCY	2 cut(s)	47, 781
EcoRII	CCWGG	3 cut(s)	292, 515, 588
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	3 cut(s)	50, 408, 629
EcoT22I	ATGCAT	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	50, 408, 629
FaeI	CATG	3 cut(s)	101, 107, 611
FaiI	YATR	9 cut(s)	87, 99, 105, 278, 501, 609, 716, 761, 763
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	3 cut(s)	97, 103, 607
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	431, 729
FokI	GGATG	2 cut(s)	187, 605
Fsp4HI	GCNGC	2 cut(s)	431, 729
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	2 cut(s)	431, 729
GsaI	CCCAGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	108, 190, 782
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	3 cut(s)	101, 107, 611
HincII	GTYRAC	2 cut(s)	535, 613
HindII	GTYRAC	2 cut(s)	535, 613
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	4 cut(s)	55, 711, 830, 842
HpaI	GTTAAC	2 cut(s)	535, 613
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	70, 749
Hpy166II	GTNNAC	3 cut(s)	287, 535, 613
Hpy188I	TCNGA	8 cut(s)	242, 260, 341, 637, 667, 789, 810, 857
Hpy188III	TCNNGA	6 cut(s)	199, 218, 352, 602, 708, 803
Hpy8I	GTNNAC	3 cut(s)	287, 535, 613
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	353, 794
HpyCH4III	ACNGT	2 cut(s)	579, 671
HpyCH4V	TGCA	6 cut(s)	40, 162, 247, 575, 728, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 572
HpyF3I	CTNAG	8 cut(s)	143, 167, 185, 338, 353, 475, 492, 840
Hsp92II	CATG	3 cut(s)	101, 107, 611
Ksp22I	TGATCA	1 cut(s)	700
KspAI	GTTAAC	2 cut(s)	535, 613
Kzo9I	GATC	5 cut(s)	604, 700, 799, 805, 852
LmnI	GCTCC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	442, 740
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	520, 843
MalI	GATC	5 cut(s)	606, 702, 801, 807, 854
MboI	GATC	5 cut(s)	604, 700, 799, 805, 852
MboII	GAAGA	4 cut(s)	166, 236, 573, 652
MhlI	GDGCHC	2 cut(s)	377, 483
MluCI	AATT	2 cut(s)	234, 688
MlyI	GAGTC	3 cut(s)	49, 824, 851
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	7 cut(s)	38, 58, 180, 197, 408, 640, 760
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	2 cut(s)	534, 612
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	267, 731
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	294, 517, 590
Mva1269I	GAATGC	2 cut(s)	247, 249
MvaI	CCWGG	3 cut(s)	294, 517, 590
MwoI	GCNNNNNNNGC	2 cut(s)	487, 572
NdeII	GATC	5 cut(s)	604, 700, 799, 805, 852
NlaIII	CATG	3 cut(s)	101, 107, 611
NlaIV	GGNNCC	2 cut(s)	12, 350
NmuCI	GTSAC	2 cut(s)	520, 843
NsiI	ATGCAT	1 cut(s)	249
PctI	GAATGC	2 cut(s)	247, 249
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	432, 730
PleI	GAGTC	3 cut(s)	49, 824, 850
PpsI	GAGTC	3 cut(s)	49, 824, 850
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	292, 515, 588
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	292, 515, 588
PspN4I	GGNNCC	2 cut(s)	12, 350
PspPI	GGNCC	3 cut(s)	47, 496, 781
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	780
PvuII	CAGCTG	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	534, 612
SatI	GCNGC	2 cut(s)	431, 729
Sau3AI	GATC	5 cut(s)	604, 700, 799, 805, 852
Sau96I	GGNCC	3 cut(s)	47, 496, 781
SchI	GAGTC	3 cut(s)	49, 824, 851
ScrFI	CCNGG	3 cut(s)	294, 517, 590
SduI	GDGCHC	2 cut(s)	377, 483
SfcI	CTRYAG	2 cut(s)	776, 795
SinI	GGWCC	2 cut(s)	47, 496
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	234, 688
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	292, 515, 588
StyI	CCWWGG	3 cut(s)	50, 408, 629
TaaI	ACNGT	2 cut(s)	579, 671
TaqI	TCGA	3 cut(s)	298, 693, 709
TasI	AATT	2 cut(s)	234, 688
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	2 cut(s)	534, 612
Tru9I	TTAA	2 cut(s)	534, 612
TscAI	CASTG	4 cut(s)	577, 582, 754, 852
TseFI	GTSAC	2 cut(s)	520, 843
TseI	GCWGC	2 cut(s)	430, 728
Tsp45I	GTSAC	2 cut(s)	520, 843
TspDTI	ATGAA	2 cut(s)	480, 609
TspRI	CASTG	4 cut(s)	577, 582, 754, 852
VpaK11BI	GGWCC	2 cut(s)	47, 496
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.