Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Reverse (-)

19060549 .. 19061584

Gene Structure 1036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1084400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAAGGGCTCCTTGTTGTTCTAAGGTTGGTTTGAATAGAGGTCCATGGAGTAACAGAGAAGACACATTACTCACCCAGTATATTGAAGCTCATGGTGAAGGCCAATGGAGATCCTTGCCAGAAAAAGCTGGCCTCCTCAGGTGTGGAAAGAGTTGCAGGCTAAGGTGGATGAACTATCTAAAACCAGACATAAAGAGAGGCAACATAACCTCCGATGAAGATGACCTAATTATCAGACTACATTCATTACTTGGCAACCGTTGGTCTCTCATTGCCGGTAGGCTTCCAGGTCGAACTGACAACGAGATCAAGAACTACTGGAACACCCATCTTAGCAAAAGACTCATATGTGAAGGAACCGACCCAAACACCCACAAAAAATTATCTGAGCCGATAGCCAAAGAAAATAAAAGGAGAGAGAACCAAAGTTGCAAGAACAGAAACAATAAGAAGGAAATGGTGAAGACGATGATGAAAAGCAAGACGAAAACAGGTCAACATGTGGAGCCACAAAAGCCTAAAGTTCATCTCCCAAAACCCACTAGGATTACTTCCTTTTTGTCCCTACCAAGAAATGACAGTTTTACTAGCAGCACTACAGTTACTACTGCGTCTTCAATCCAAGATTTAAACGGAGGAGGAGGAGGAGCTTTCGGTGTTAATCCATGGTGTAATAATGGGGTTGTGCTTTGTGTTGGTGATCCAGATCAAGATCCTATTAATTCTTCAGCTGATGGCGGCGATGATCACTCACTTGAAAATCTTTATGAAGAATATCTACAAGCGCTTCTCACAGACCATCATCACGATCATCAAAATCAACTTGAATTAGACTCATTTGCCGAGTCACTGTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.26

Weight (kDa)

8.56

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.5e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 71	9.4e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 113	1.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	741
AclWI	GGATC	3 cut(s)	108, 698, 710
AcuI	CTGAAG	1 cut(s)	714
AfeI	AGCGCT	1 cut(s)	789
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	5 cut(s)	37, 89, 621, 761, 830
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	92, 131, 653, 734
AluI	AGCT	4 cut(s)	92, 131, 653, 734
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	108, 698, 710
Aor51HI	AGCGCT	1 cut(s)	789
AoxI	GGCC	2 cut(s)	103, 133
ApeKI	GCWGC	1 cut(s)	594
AseI	ATTAAT	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	67, 110, 475, 713
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	4 cut(s)	54, 86, 765, 797
BbsI	GAAGAC	3 cut(s)	69, 473, 609
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	3 cut(s)	339, 731, 810
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	546, 591
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	791
BisI	GCNGC	2 cut(s)	595, 742
BlsI	GCNGC	2 cut(s)	596, 743
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	12, 361, 510
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	3 cut(s)	69, 473, 609
Bpu10I	CCTNAGC	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	708, 714
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	47, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	79, 326
Bse21I	CCTNAGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	2 cut(s)	708, 714
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 668
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	2 cut(s)	708, 714
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	154, 381
BseNI	ACTGG	2 cut(s)	79, 326
BseRI	GAGGAG	5 cut(s)	128, 654, 657, 660, 663
BseXI	GCAGC	1 cut(s)	606
BshFI	GGCC	2 cut(s)	105, 135
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	105, 135
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
Bsp19I	CCATGG	2 cut(s)	47, 668
BspACI	CCGC	1 cut(s)	741
BspANI	GGCC	2 cut(s)	105, 135
BspCNI	CTCAG	2 cut(s)	153, 382
BspLI	GGNNCC	3 cut(s)	12, 361, 510
BspPI	GGATC	3 cut(s)	108, 698, 710
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	79, 326
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	47, 668
BssMI	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
BssT1I	CCWWGG	2 cut(s)	47, 668
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	263, 584, 604, 855
BstC8I	GCNNGC	2 cut(s)	133, 161
BstDEI	CTNAG	5 cut(s)	24, 140, 164, 335, 390
BstDSI	CCRYGG	2 cut(s)	47, 668
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	791
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	7 cut(s)	116, 312, 706, 712, 718, 751, 814
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	606
BstV2I	GAAGAC	3 cut(s)	69, 473, 609
BstX2I	RGATCY	2 cut(s)	113, 715
BstYI	RGATCY	2 cut(s)	113, 715
Bsu36I	CCTNAGG	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	105, 135
BtgI	CCRYGG	2 cut(s)	47, 668
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	851
Cac8I	GCNNGC	2 cut(s)	133, 161
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	603
CviAII	CATG	4 cut(s)	48, 95, 503, 669
DdeI	CTNAG	5 cut(s)	24, 140, 164, 335, 390
DpnI	GATC	7 cut(s)	115, 311, 705, 711, 717, 750, 813
DpnII	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
DraI	TTTAAA	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	47, 668
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	44
Eco47III	AGCGCT	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	47, 668
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 668
FaeI	CATG	4 cut(s)	51, 98, 506, 672
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	4 cut(s)	47, 94, 502, 668
FauNDI	CATATG	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	595, 742
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	595, 742
FspBI	CTAG	2 cut(s)	546, 591
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	2 cut(s)	595, 742
HaeII	RGCGCY	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	105, 135
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	603
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	4 cut(s)	51, 98, 506, 672
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	1 cut(s)	500
HindII	GTYRAC	1 cut(s)	500
HinfI	GANTC	3 cut(s)	345, 836, 848
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	4 cut(s)	67, 110, 475, 713
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	4 cut(s)	217, 239, 391, 863
Hpy188III	TCNNGA	4 cut(s)	313, 707, 713, 809
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	95, 350, 448
HpyCH4III	ACNGT	4 cut(s)	263, 584, 604, 855
HpyCH4V	TGCA	2 cut(s)	159, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	5 cut(s)	24, 140, 164, 335, 390
Hsp92II	CATG	4 cut(s)	51, 98, 506, 672
HspAI	GCGC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
LmnI	GCTCC	3 cut(s)	16, 508, 650
Lsp1109I	GCAGC	1 cut(s)	606
MaeI	CTAG	2 cut(s)	546, 591
MaeIII	GTNAC	3 cut(s)	53, 604, 849
MalI	GATC	7 cut(s)	115, 311, 705, 711, 717, 750, 813
MboI	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
MboII	GAAGA	6 cut(s)	74, 233, 478, 609, 720, 785
MflI	RGATCY	2 cut(s)	113, 715
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	231, 383, 724, 830
MlyI	GAGTC	3 cut(s)	339, 830, 857
MnlI	CCTC	9 cut(s)	35, 146, 149, 194, 223, 632, 635, 638, 641
MseI	TTAA	4 cut(s)	632, 663, 723, 857
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	517
NcoI	CCATGG	2 cut(s)	47, 668
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
NlaIII	CATG	4 cut(s)	51, 98, 506, 672
NlaIV	GGNNCC	3 cut(s)	12, 361, 510
NmuCI	GTSAC	1 cut(s)	849
NspI	RCATGY	1 cut(s)	506
PciI	ACATGT	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	596, 743
PleI	GAGTC	3 cut(s)	339, 830, 856
PpsI	GAGTC	3 cut(s)	339, 830, 856
PscI	ACATGT	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	12, 361, 510
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	113, 715
PvuII	CAGCTG	1 cut(s)	734
SaqAI	TTAA	4 cut(s)	632, 663, 723, 857
SatI	GCNGC	2 cut(s)	595, 742
Sau3AI	GATC	7 cut(s)	113, 309, 703, 709, 715, 748, 811
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	339, 830, 857
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	4 cut(s)	231, 383, 724, 830
SsiI	CCGC	1 cut(s)	741
SspMI	CTAG	2 cut(s)	546, 591
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 668
TaaI	ACNGT	4 cut(s)	263, 584, 604, 855
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	231, 383, 724, 830
TauI	GCSGC	1 cut(s)	744
Tru1I	TTAA	4 cut(s)	632, 663, 723, 857
Tru9I	TTAA	4 cut(s)	632, 663, 723, 857
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	6 cut(s)	188, 234, 237, 491, 518, 786
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	723
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	2 cut(s)	546, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.