Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Reverse (-)

22334415 .. 22335883

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1153200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGAAGGGCTCCTTGTTGTTCCAAGGTTGGTTTGCATAGAGGTCCATGGACTCCTAGAGAAGACACATTACTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGCCAAAAAAAGCTGGCCTCCTCAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGATGAACTATCTAAGACCAGACATAAAGAGAGGCAACATAACCCCCGATGAAGATGACCTAATTATCAGACTACATTCACTTCTTGGCAACCGTTGGTCTCTCATCGCCGGTAGGCTTCCGGGTCGAACCGATAATGAGATCAAGAACTACTGGAACACCCATCTTAGCAAAAGACTCAGAAACGAAGGCACCGACCCAAACACCCACAAAAAATTATCTGAGCCGATAGCCAGGGAAAATAAAAGGAGAAAGAACCAAAGAAGCAAGAGCAACAACAATAAGAAGGAGATGGTGATGACGAAAGACAAGAACAATAAAACTGCCCAACATGTGGAGCCACAAAAGCCTAAGGTTCATCTCCCAAAACCTACTAGGTTTACTTCCTTTTTATCCCTACCAAGAAATGACAGTTTTACTAGTAGTACTACAGTTACTACTGGGTCTTCAAGCCAAGACTTAAACGGAGGGGGGGGGAGAGGAGGAGGAGGAGGAGGTTTTGGTGTTAATACTTGGTGTAATAATGGTGGGCTTGTGTTTTGTGTTGGTGATGAAGATCAAGATCATGATCCTATTAATTCTTCAGCTGATGGCGGTGATGATCATACGCTTGAAAATCTATATGAAGAATATCTACAGGCGCTTCTGAAGATAGACCATCATCATGATCATCAAAATCAACTTGAATTAGAGTCATTTGCCGAGTCACTGTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

296

Amino Acids

33.23

Weight (kDa)

9.16

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 72	2.1e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	7.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	2 cut(s)	108, 731
AcuI	CTGAAG	2 cut(s)	735, 836
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	89, 618, 782, 854
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	3 cut(s)	92, 131, 755
AluI	AGCT	3 cut(s)	92, 131, 755
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	108, 731
AoxI	GGCC	2 cut(s)	103, 133
AseI	ATTAAT	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	5 cut(s)	67, 110, 475, 728, 776
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	2 cut(s)	140, 519
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	4 cut(s)	54, 86, 786, 818
BbsI	GAAGAC	2 cut(s)	69, 606
BccI	CCATC	4 cut(s)	339, 454, 752, 834
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	2 cut(s)	769, 835
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	3 cut(s)	57, 543, 588
BfmI	CTRYAG	2 cut(s)	597, 803
BfoI	RGCGCY	1 cut(s)	812
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	291, 403
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	12, 361, 507
BmrFI	CCNGG	2 cut(s)	291, 403
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	2 cut(s)	69, 606
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	291
BsaBI	GATNNNNATC	3 cut(s)	723, 729, 735
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	24, 47, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	326, 613
Bse21I	CCTNAGG	2 cut(s)	140, 519
Bse8I	GATNNNNATC	3 cut(s)	723, 729, 735
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	24, 47, 402
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	3 cut(s)	723, 729, 735
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	154, 361, 381
BseNI	ACTGG	2 cut(s)	326, 613
BseRI	GAGGAG	6 cut(s)	128, 663, 666, 669, 672, 675
BshFI	GGCC	2 cut(s)	105, 135
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	279, 290
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	105, 135
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	2 cut(s)	105, 135
BspCNI	CTCAG	3 cut(s)	153, 360, 382
BspHI	TCATGA	2 cut(s)	733, 832
BspLI	GGNNCC	3 cut(s)	12, 361, 507
BspPI	GGATC	2 cut(s)	108, 731
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	326, 613
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	24, 47, 402
BssMI	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
BssT1I	CCWWGG	2 cut(s)	24, 47
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	4 cut(s)	263, 581, 601, 879
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	133, 161
BstDEI	CTNAG	7 cut(s)	140, 164, 182, 335, 347, 390, 519
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	7 cut(s)	116, 312, 727, 733, 739, 772, 838
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	289, 401
BstSFI	CTRYAG	2 cut(s)	597, 803
BstV2I	GAAGAC	2 cut(s)	69, 606
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
Bsu36I	CCTNAGG	2 cut(s)	140, 519
BsuRI	GGCC	2 cut(s)	105, 135
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	875
Cac8I	GCNNGC	2 cut(s)	133, 161
CciI	TCATGA	2 cut(s)	733, 832
CfoI	GCGC	1 cut(s)	811
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	5 cut(s)	48, 95, 500, 734, 833
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	7 cut(s)	140, 164, 182, 335, 347, 390, 519
DpnI	GATC	7 cut(s)	115, 311, 726, 732, 738, 771, 837
DpnII	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	24, 47
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	735, 836
Eco81I	CCTNAGG	2 cut(s)	140, 519
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	24, 47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	24, 47
FaeI	CATG	5 cut(s)	51, 98, 503, 737, 836
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	5 cut(s)	47, 94, 499, 733, 832
FbaI	TGATCA	2 cut(s)	769, 835
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	3 cut(s)	57, 543, 588
GlaI	GCGC	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	105, 135
HapII	CCGG	2 cut(s)	279, 290
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	5 cut(s)	51, 98, 503, 737, 836
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HinfI	GANTC	4 cut(s)	52, 345, 860, 872
HpaII	CCGG	2 cut(s)	279, 290
HphI	GGTGA	5 cut(s)	67, 110, 475, 728, 776
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	5 cut(s)	239, 350, 391, 816, 887
Hpy188III	TCNNGA	4 cut(s)	313, 728, 734, 833
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	3 cut(s)	95, 350, 448
HpyCH4III	ACNGT	4 cut(s)	263, 581, 601, 879
HpyCH4V	TGCA	2 cut(s)	37, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	7 cut(s)	140, 164, 182, 335, 347, 390, 519
Hsp92II	CATG	5 cut(s)	51, 98, 503, 737, 836
HspAI	GCGC	1 cut(s)	809
Ksp22I	TGATCA	2 cut(s)	769, 835
Kzo9I	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
LmnI	GCTCC	2 cut(s)	16, 505
MaeI	CTAG	3 cut(s)	57, 543, 588
MaeIII	GTNAC	2 cut(s)	601, 873
MalI	GATC	7 cut(s)	115, 311, 726, 732, 738, 771, 837
MboI	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
MboII	GAAGA	8 cut(s)	74, 163, 233, 606, 734, 741, 806, 829
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	231, 383, 745, 854
MlyI	GAGTC	4 cut(s)	46, 339, 869, 881
MseI	TTAA	4 cut(s)	629, 675, 744, 881
MslI	CAYNNNNRTG	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	2 cut(s)	279, 290
MspR9I	CCNGG	2 cut(s)	291, 403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
NlaIII	CATG	5 cut(s)	51, 98, 503, 737, 836
NlaIV	GGNNCC	3 cut(s)	12, 361, 507
NmuCI	GTSAC	1 cut(s)	873
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	2 cut(s)	733, 832
PciI	ACATGT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	502
PleI	GAGTC	4 cut(s)	46, 339, 868, 880
PpsI	GAGTC	4 cut(s)	46, 339, 868, 880
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	12, 361, 507
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	831
SaqAI	TTAA	4 cut(s)	629, 675, 744, 881
Sau3AI	GATC	7 cut(s)	113, 309, 724, 730, 736, 769, 835
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	4 cut(s)	46, 339, 869, 881
ScrFI	CCNGG	2 cut(s)	291, 403
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	597, 803
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	831
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	4 cut(s)	231, 383, 745, 854
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	3 cut(s)	57, 543, 588
StyD4I	CCNGG	2 cut(s)	289, 401
StyI	CCWWGG	2 cut(s)	24, 47
TaaI	ACNGT	4 cut(s)	263, 581, 601, 879
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	231, 383, 745, 854
TatI	WGTACW	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	629, 675, 744, 881
Tru9I	TTAA	4 cut(s)	629, 675, 744, 881
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	1 cut(s)	873
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	5 cut(s)	188, 234, 515, 735, 807
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	1 cut(s)	882
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	744
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	3 cut(s)	57, 543, 588
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.