Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Reverse (-)

17242583 .. 17243614

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGAAGGGCTCCTTGCTGTTCCAAGGTTGGTTTGCATAGAGGTCCATGGACTCCTAGAGAAGACACATTACTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGCCAAAAAAAGCTGGCCTCCTCAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGATGAACTATCTAAGACCAGACATAAAGAGAGGCAACATAACCCCCGATGAAGATGACCTAATTATCAGACTACATTCACTTCTTGGCAACCGTTGGTCTCTCATCGCCGGTAGGCTTCCGGGTCGAACCGATAATGAGATCAAGAACTACTGGAACACCCATCTTAGCAAAAGACTCAGAAACGAAGGCACCGACCCAAACACCCACAAAAAATTATCTGAGCCGATAGCCAAAGAAAATAAAAGGAGAAAGAACCAAAGAAGCAAGAACAACAACAATAAGAAGGAGATGGTGATGACGAAAGACAAGAACAAGAAAACAGCCCAACATGTGGAGCCACAAAAGCCTAAGGTTCATCTTCCAAAACCTACTAGGTTTACTTCCCTTTTATCCCTACCAAGAAATGACAGTTTTACTAGTAGTACTACAGTTACTACTGGGTCTTCAAGCCAAGACTTAAACAGAGGGGGAGGGAGAGGAGGAGGAGGAGGAGGTTTTGGTGTTAATACTTGGTGTAATAATGGGCTTGTGTTTTGTGTTGGTGATGAAGATCAAGATCATGATCCTATTAATTCTTCAGCTGATGGCGGTGATGATCATACGCTTGAAAATCTATATGAAGAATATCTACAGGCGCTTCTGAAGACAGACCATCATCATGATCATCAAAATCAACTTGAATTAGAGTCATTTGCTGAGTCACTGTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

295

Amino Acids

33.24

Weight (kDa)

9.31

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	1 cut(s)	759
AclWI	GGATC	2 cut(s)	108, 728
AcuI	CTGAAG	2 cut(s)	732, 833
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	89, 618, 779, 851
AhlI	ACTAGT	1 cut(s)	587
AluBI	AGCT	3 cut(s)	92, 131, 752
AluI	AGCT	3 cut(s)	92, 131, 752
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	108, 728
AoxI	GGCC	2 cut(s)	103, 133
AseI	ATTAAT	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	5 cut(s)	67, 110, 475, 725, 773
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	2 cut(s)	140, 519
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	4 cut(s)	54, 86, 783, 815
BbsI	GAAGAC	3 cut(s)	69, 606, 821
BccI	CCATC	4 cut(s)	339, 454, 749, 831
BclI	TGATCA	2 cut(s)	766, 832
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	3 cut(s)	57, 543, 588
BfmI	CTRYAG	2 cut(s)	597, 800
BfoI	RGCGCY	1 cut(s)	809
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	12, 361, 507
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	3 cut(s)	69, 606, 821
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	291
BsaBI	GATNNNNATC	3 cut(s)	720, 726, 732
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	24, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	326, 613
Bse21I	CCTNAGG	2 cut(s)	140, 519
Bse8I	GATNNNNATC	3 cut(s)	720, 726, 732
BseDI	CCNNGG	2 cut(s)	24, 47
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	3 cut(s)	720, 726, 732
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	4 cut(s)	154, 361, 381, 858
BseNI	ACTGG	2 cut(s)	326, 613
BseRI	GAGGAG	6 cut(s)	128, 663, 666, 669, 672, 675
BshFI	GGCC	2 cut(s)	105, 135
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	279, 290
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	105, 135
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	759
BspANI	GGCC	2 cut(s)	105, 135
BspCNI	CTCAG	4 cut(s)	153, 360, 382, 859
BspHI	TCATGA	2 cut(s)	730, 829
BspLI	GGNNCC	3 cut(s)	12, 361, 507
BspPI	GGATC	2 cut(s)	108, 728
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	326, 613
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	24, 47
BssMI	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
BssT1I	CCWWGG	2 cut(s)	24, 47
Bst4CI	ACNGT	4 cut(s)	263, 581, 601, 876
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	133, 161
BstDEI	CTNAG	8 cut(s)	140, 164, 182, 335, 347, 390, 519, 867
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	7 cut(s)	116, 312, 724, 730, 736, 769, 835
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	597, 800
BstV2I	GAAGAC	3 cut(s)	69, 606, 821
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
Bsu36I	CCTNAGG	2 cut(s)	140, 519
BsuRI	GGCC	2 cut(s)	105, 135
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	2 cut(s)	133, 161
CciI	TCATGA	2 cut(s)	730, 829
CfoI	GCGC	1 cut(s)	808
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	5 cut(s)	48, 95, 500, 731, 830
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	8 cut(s)	140, 164, 182, 335, 347, 390, 519, 867
DpnI	GATC	7 cut(s)	115, 311, 723, 729, 735, 768, 834
DpnII	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	24, 47
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	732, 833
Eco81I	CCTNAGG	2 cut(s)	140, 519
EcoT14I	CCWWGG	2 cut(s)	24, 47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	24, 47
FaeI	CATG	5 cut(s)	51, 98, 503, 734, 833
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	5 cut(s)	47, 94, 499, 730, 829
FbaI	TGATCA	2 cut(s)	766, 832
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	3 cut(s)	57, 543, 588
GlaI	GCGC	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	809
HaeIII	GGCC	2 cut(s)	105, 135
HapII	CCGG	2 cut(s)	279, 290
HhaI	GCGC	1 cut(s)	808
Hin1II	CATG	5 cut(s)	51, 98, 503, 734, 833
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HinfI	GANTC	4 cut(s)	52, 345, 857, 869
HpaII	CCGG	2 cut(s)	279, 290
HphI	GGTGA	5 cut(s)	67, 110, 475, 725, 773
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	5 cut(s)	239, 350, 391, 813, 884
Hpy188III	TCNNGA	4 cut(s)	313, 725, 731, 830
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	3 cut(s)	95, 350, 448
HpyCH4III	ACNGT	4 cut(s)	263, 581, 601, 876
HpyCH4V	TGCA	2 cut(s)	37, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	8 cut(s)	140, 164, 182, 335, 347, 390, 519, 867
Hsp92II	CATG	5 cut(s)	51, 98, 503, 734, 833
HspAI	GCGC	1 cut(s)	806
Ksp22I	TGATCA	2 cut(s)	766, 832
Kzo9I	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
LmnI	GCTCC	2 cut(s)	16, 505
LpnPI	CCDG	9 cut(s)	117, 127, 145, 201, 292, 303, 307, 594, 788
MaeI	CTAG	3 cut(s)	57, 543, 588
MaeIII	GTNAC	2 cut(s)	601, 870
MalI	GATC	7 cut(s)	115, 311, 723, 729, 735, 768, 834
MboI	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
MboII	GAAGA	9 cut(s)	74, 163, 233, 521, 606, 731, 738, 803, 826
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	231, 383, 742, 851
MlyI	GAGTC	4 cut(s)	46, 339, 866, 878
MseI	TTAA	4 cut(s)	629, 675, 741, 878
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	279, 290
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
NlaIII	CATG	5 cut(s)	51, 98, 503, 734, 833
NlaIV	GGNNCC	3 cut(s)	12, 361, 507
NmuCI	GTSAC	1 cut(s)	870
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	2 cut(s)	730, 829
PciI	ACATGT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	502
PleI	GAGTC	4 cut(s)	46, 339, 865, 877
PpsI	GAGTC	4 cut(s)	46, 339, 865, 877
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	741
PspN4I	GGNNCC	3 cut(s)	12, 361, 507
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	629, 675, 741, 878
Sau3AI	GATC	7 cut(s)	113, 309, 721, 727, 733, 766, 832
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	4 cut(s)	46, 339, 866, 878
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	597, 800
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	828
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	4 cut(s)	231, 383, 742, 851
SsiI	CCGC	1 cut(s)	759
SspMI	CTAG	3 cut(s)	57, 543, 588
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	24, 47
TaaI	ACNGT	4 cut(s)	263, 581, 601, 876
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	231, 383, 742, 851
TatI	WGTACW	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	629, 675, 741, 878
Tru9I	TTAA	4 cut(s)	629, 675, 741, 878
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	870
Tsp45I	GTSAC	1 cut(s)	870
TspDTI	ATGAA	5 cut(s)	188, 234, 515, 732, 804
TspRI	CASTG	1 cut(s)	879
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	741
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	3 cut(s)	57, 543, 588
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.