Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Forward (+)

16345621 .. 16347008

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGAAGGGCTCCTTGTTGTTCAAAGGTTGGTTTGCACAGAGGCCCATGGACTCCCAGAGAGGACACATTGCTCACCAAATATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGCCCAAAAAAGCCGGCCTCCTTAGGTGTGGGAAGAGTTGCAGGCTAAGATGGATGAACTACCTAAGGCCAGATATCAAGAGAGGAAACATTACTCCAGACGAAGATGACCTAATTATCCGACTGCATTCACTTCTCGGAAACCGCTGGTCTCTCATCGCCGGTAGACTTCCTGGTCGAACCGATAACGAGATCAAGAACTACTGGAACACCCATCTCAGCAAAAGGCTCATGAGCGAAGGAACTGACCCGAACACGCACCAAAAACTATCCCAGCCTCCTGCCCCCAAGGAAAACAAGAGGAAGAAGAAGCAGAACCACAAAGCCAAGAACAAGAACAATACTGAAGATCGCATAGTGCCAGAAAAGCCTAAGGTCCATCTCCCCAAACCCACCAGGGTAACTTCCTTTGTTAACCTACCAAGAAACGATAGCTTTACCACGGCTAGCACTACTGTGTCTTCTAGCCAGGATCATGTTAACAAGATTATTCCTTGGTCTGATTTCAAAGAGGGTGGGGTGGTCTTCTCTGTTGGTGATGGGTCGTCGTCGGATTTCGAGTGTGATCAGTCTCGAATAATCCTTAATGTCGTAGCTGGTGAGGATGATGACCACAATTTGGAAAATATTTACGAGGAATATCTGCAGGCCCTTCTGAAAACGACAGAGCAAGATCAGAACTGCCAAGTTGAGTTAGACTCGTTTGCTGAGTCACTGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.86

Weight (kDa)

8.81

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 72	2e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	6.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	108, 597
AcuI	CTGAAG	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	24, 89, 625
AjnI	CCWGG	3 cut(s)	289, 512, 585
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	92, 552, 713
AluI	AGCT	3 cut(s)	92, 552, 713
Alw26I	GTCTC	2 cut(s)	273, 693
AlwI	GGATC	2 cut(s)	108, 597
AoxI	GGCC	5 cut(s)	43, 103, 133, 185, 765
AspS9I	GGNCC	3 cut(s)	44, 493, 766
AsuHPI	GGTGA	4 cut(s)	67, 110, 665, 728
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	493
AxyI	CCTNAGG	3 cut(s)	140, 182, 489
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	570, 634
BccI	CCATC	4 cut(s)	162, 339, 504, 650
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	3 cut(s)	291, 514, 587
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	273, 693
BfaI	CTAG	2 cut(s)	564, 582
BfmI	CTRYAG	1 cut(s)	761
Bme1390I	CCNGG	3 cut(s)	291, 514, 587
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	44, 493, 766
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	3 cut(s)	291, 514, 587
BmtI	GCTAGC	1 cut(s)	567
BpiI	GAAGAC	2 cut(s)	570, 634
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	5 cut(s)	47, 405, 513, 558, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	736
Bse118I	RCCGGY	2 cut(s)	131, 278
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	3 cut(s)	140, 182, 489
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	291, 514, 587
BseDI	CCNNGG	5 cut(s)	47, 405, 513, 558, 611
BseGI	GGATG	2 cut(s)	177, 727
BseLI	CCNNNNNNNGG	1 cut(s)	736
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	349, 816
BseNI	ACTGG	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	5 cut(s)	45, 105, 135, 187, 767
BsiSI	CCGG	2 cut(s)	132, 279
BslI	CCNNNNNNNGG	1 cut(s)	736
BsmAI	GTCTC	2 cut(s)	273, 693
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	5 cut(s)	45, 105, 135, 187, 767
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	5 cut(s)	45, 105, 135, 187, 767
BspCNI	CTCAG	2 cut(s)	348, 817
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	765
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	108, 597
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	131, 278
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	2 cut(s)	131, 278
BssECI	CCNNGG	5 cut(s)	47, 405, 513, 558, 611
BssMI	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
BssT1I	CCWWGG	3 cut(s)	47, 405, 611
Bst2UI	CCWGG	3 cut(s)	291, 514, 587
Bst4CI	ACNGT	2 cut(s)	574, 834
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	4 cut(s)	133, 161, 565, 765
BstDEI	CTNAG	6 cut(s)	140, 164, 182, 335, 489, 825
BstDSI	CCRYGG	2 cut(s)	47, 558
BstF5I	GGATG	2 cut(s)	177, 727
BstKTI	GATC	7 cut(s)	116, 312, 469, 592, 685, 793, 840
BstMAI	GTCTC	2 cut(s)	273, 693
BstMBI	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	3 cut(s)	291, 514, 587
BstSCI	CCNGG	3 cut(s)	289, 512, 585
BstSFI	CTRYAG	1 cut(s)	761
BstV2I	GAAGAC	2 cut(s)	570, 634
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
Bsu36I	CCTNAGG	3 cut(s)	140, 182, 489
BsuRI	GGCC	5 cut(s)	45, 105, 135, 187, 767
BtgI	CCRYGG	2 cut(s)	47, 558
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	177, 727
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	4 cut(s)	133, 161, 565, 765
CciI	TCATGA	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	131, 278
Cfr13I	GGNCC	3 cut(s)	44, 493, 766
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	48, 95, 349, 593
DdeI	CTNAG	6 cut(s)	140, 164, 182, 335, 489, 825
DpnI	GATC	7 cut(s)	115, 311, 468, 591, 684, 792, 839
DpnII	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
DrdI	GACNNNNNNGTC	1 cut(s)	291
DseDI	GACNNNNNNGTC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	3 cut(s)	47, 405, 611
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	483
Eco81I	CCTNAGG	3 cut(s)	140, 182, 489
EcoO109I	RGGNCCY	1 cut(s)	766
EcoRII	CCWGG	3 cut(s)	289, 512, 585
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	3 cut(s)	47, 405, 611
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	3 cut(s)	47, 405, 611
FaeI	CATG	4 cut(s)	51, 98, 352, 596
FaiI	YATR	6 cut(s)	49, 84, 96, 350, 473, 594
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	4 cut(s)	47, 94, 348, 592
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	283
FokI	GGATG	2 cut(s)	184, 734
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	2 cut(s)	564, 582
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	45, 105, 135, 187, 767
HapII	CCGG	2 cut(s)	132, 279
Hin1II	CATG	4 cut(s)	51, 98, 352, 596
HincII	GTYRAC	2 cut(s)	532, 598
HindII	GTYRAC	2 cut(s)	532, 598
HinfI	GANTC	3 cut(s)	52, 815, 827
HpaI	GTTAAC	2 cut(s)	532, 598
HpaII	CCGG	2 cut(s)	132, 279
HphI	GGTGA	4 cut(s)	67, 110, 665, 728
Hpy166II	GTNNAC	3 cut(s)	284, 532, 598
Hpy188I	TCNGA	7 cut(s)	239, 257, 619, 670, 774, 795, 842
Hpy188III	TCNNGA	5 cut(s)	196, 215, 313, 349, 690
Hpy8I	GTNNAC	3 cut(s)	284, 532, 598
Hpy99I	CGWCG	2 cut(s)	667, 670
HpyAV	CCTTC	3 cut(s)	95, 350, 779
HpyCH4III	ACNGT	2 cut(s)	574, 834
HpyCH4V	TGCA	4 cut(s)	37, 159, 244, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	6 cut(s)	140, 164, 182, 335, 489, 825
Hsp92II	CATG	4 cut(s)	51, 98, 352, 596
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	2 cut(s)	532, 598
Kzo9I	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
LmnI	GCTCC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	564, 582
MaeIII	GTNAC	2 cut(s)	517, 828
MalI	GATC	7 cut(s)	115, 311, 468, 591, 684, 792, 839
MboI	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
MboII	GAAGA	7 cut(s)	163, 233, 433, 436, 476, 570, 634
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	231, 733
MlyI	GAGTC	3 cut(s)	46, 809, 836
MmeI	TCCRAC	2 cut(s)	262, 648
MnlI	CCTC	9 cut(s)	35, 55, 146, 194, 405, 411, 622, 712, 745
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	3 cut(s)	531, 597, 702
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	132, 279
MspR9I	CCNGG	3 cut(s)	291, 514, 587
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	291, 514, 587
MwoI	GCNNNNNNNGC	1 cut(s)	484
NaeI	GCCGGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
NgoMIV	GCCGGC	1 cut(s)	131
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	4 cut(s)	51, 98, 352, 596
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	828
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	736
PleI	GAGTC	3 cut(s)	46, 809, 835
PpsI	GAGTC	3 cut(s)	46, 809, 835
Psp6I	CCWGG	3 cut(s)	289, 512, 585
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	3 cut(s)	289, 512, 585
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	44, 493, 766
PstI	CTGCAG	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	531, 597, 702
Sau3AI	GATC	7 cut(s)	113, 309, 466, 589, 682, 790, 837
Sau96I	GGNCC	3 cut(s)	44, 493, 766
SchI	GAGTC	3 cut(s)	46, 809, 836
ScrFI	CCNGG	3 cut(s)	291, 514, 587
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	30, 94, 146, 183, 231, 495, 537, 554, 715
SfcI	CTRYAG	1 cut(s)	761
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	231, 733
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	2 cut(s)	564, 582
StyD4I	CCNGG	3 cut(s)	289, 512, 585
StyI	CCWWGG	3 cut(s)	47, 405, 611
TaaI	ACNGT	2 cut(s)	574, 834
TaqI	TCGA	3 cut(s)	295, 675, 691
TasI	AATT	2 cut(s)	231, 733
Tru1I	TTAA	3 cut(s)	531, 597, 702
Tru9I	TTAA	3 cut(s)	531, 597, 702
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	828
Tsp45I	GTSAC	1 cut(s)	828
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	837
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	2 cut(s)	564, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.