Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014741

Physical Location & Seq

Genomic Coordinates Reverse (-)

14542827 .. 14544303

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGAAGGGCTCCTTGTTGTTCGAAGGTTGGTTTGCACAGAGGTCCTTGGACTCCCAGAGAAGACACATTGCTCACCAAATATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCTTGCCCAAAAAAGCTGGCCTCCTTAGGTGTGGGAAGAGTTGCAGGCTAAGATGGATGAACTACCTCAGGCCAGATATCAAGAGAGGAAACATTACTCCAGACGAAGACGACCTAATAATCCGACTGCATTCACTTCTCGGAAACCGCTGGTCTCTCATAGCAGGTAGACTTCCGGGTCGGACCGATAACGAGATCAAGAACTACTGGAACACCCATCTGAGCAAAAGGCTCATGAACGAAGGAACTGACCCGAACACGCATCAAAAACTATCCCAGCCTCCGCCGCCCAAGGAAAACAAGAGGAAGAAGAAGCAGAACCACAAATCCAAGCACAAGAACAAGACTGAGAAACGCTCATTACCTGAAAAGCCTAAGGTCCATCTCCCCAAACCCACCAGGATCACTTCCTTTGTTAACCTACCAAGGCAAGATAGCTTTACCACAGCTAGTACCAATGTGTCTTCTAGTCAGGATCAAGTTCAGGATCATATTAACAATATTATTCCTTGGTCTGATATCAAAGAGGGTGGGGCGGTCTTCTCCGTCGGTGATGGGTCGACGTCGTCGGATTTCGAGTGTGATCAGTCTCGGATAATACCTAATGTTGCAGCCGGTGGGGATGACCACAGTCTGGAAAATATTTACGAGGAATATCTGCAGGCCCTTCTGAAGACGACAGATCAAGATCAGAACTATCAGGTTGAGTTGGATACTTTTGCTGAGTCGCTGCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

285

Amino Acids

32.32

Weight (kDa)

9.18

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 72	2e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	6.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	2.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014741)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15200 FvH4_7g16990
malus_domestica	MD01G1084400.v1.1 MD07G1153200.v1.1
prunus_persica	Prupe.2G192100_v2.0.a1
pyrus_communis	pycom07g15110
rosa_chinensis	RchiOBHm_Chr1g0360311
rosa_laevigata	RLG00000027815
rosa_multiflora	Rmu_ssc0000368.1_g000058
rosa_roxburghii	Rroxscaffold_4G00296250
rosa_rugosa	Rorug01G0276300
rosa_samantha	Rh1AG290100 Rh1BG255500 Rh1CG273100 Rh1DG285200
rosa_wichuraiana	Rw0G022430 Rw0G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	291
AatII	GACGTC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccI	GTMKAC	2 cut(s)	283, 674
AciI	CCGC	4 cut(s)	262, 398, 401, 650
AclWI	GGATC	4 cut(s)	108, 524, 597, 609
AcuI	CTGAAG	1 cut(s)	806
AcyI	GRCGYC	1 cut(s)	677
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	748
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	512
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	4 cut(s)	92, 131, 552, 563
AluI	AGCT	4 cut(s)	92, 131, 552, 563
Alw26I	GTCTC	2 cut(s)	273, 708
AlwI	GGATC	4 cut(s)	108, 524, 597, 609
AoxI	GGCC	4 cut(s)	103, 133, 185, 777
ApeKI	GCWGC	2 cut(s)	725, 844
AspS9I	GGNCC	4 cut(s)	44, 297, 493, 778
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	67, 677
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	3 cut(s)	44, 297, 493
AxyI	CCTNAGG	3 cut(s)	140, 182, 489
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	5 cut(s)	69, 228, 570, 646, 794
BbvI	GCAGC	2 cut(s)	737, 831
BccI	CCATC	4 cut(s)	162, 339, 504, 662
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	820
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	273, 708
BfaI	CTAG	2 cut(s)	564, 582
BfmI	CTRYAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	820
BisI	GCNGC	3 cut(s)	401, 726, 845
BlsI	GCNGC	3 cut(s)	402, 727, 846
Bme1390I	CCNGG	2 cut(s)	291, 514
Bme18I	GGWCC	3 cut(s)	44, 297, 493
BmgT120I	GGNCC	4 cut(s)	44, 297, 493, 778
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	291, 514
BmsI	GCATC	1 cut(s)	385
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	5 cut(s)	69, 228, 570, 646, 794
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	47, 405, 539, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	3 cut(s)	140, 182, 489
Bse3DI	GCAATG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	4 cut(s)	47, 405, 539, 623
BseGI	GGATG	2 cut(s)	177, 742
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	4 cut(s)	196, 326, 453, 828
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	737, 831
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	4 cut(s)	105, 135, 187, 779
BsiSI	CCGG	2 cut(s)	290, 729
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmAI	GTCTC	2 cut(s)	273, 708
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	4 cut(s)	105, 135, 187, 779
Bso31I	GGTCTC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
BspACI	CCGC	4 cut(s)	262, 398, 401, 650
BspANI	GGCC	4 cut(s)	105, 135, 187, 779
BspCNI	CTCAG	4 cut(s)	195, 327, 454, 829
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	4 cut(s)	108, 524, 597, 609
BspT104I	TTCGAA	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	4 cut(s)	47, 405, 539, 623
BssMI	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
BssNI	GRCGYC	1 cut(s)	677
BssT1I	CCWWGG	4 cut(s)	47, 405, 539, 623
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	133, 161, 777
BstDEI	CTNAG	7 cut(s)	140, 164, 182, 335, 462, 489, 837
BstF5I	GGATG	2 cut(s)	177, 742
BstKTI	GATC	9 cut(s)	116, 312, 519, 592, 604, 700, 799, 805, 852
BstMAI	GTCTC	2 cut(s)	273, 708
BstMBI	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	514
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	2 cut(s)	289, 512
BstSFI	CTRYAG	1 cut(s)	773
BstV1I	GCAGC	2 cut(s)	737, 831
BstV2I	GAAGAC	5 cut(s)	69, 228, 570, 646, 794
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
Bsu36I	CCTNAGG	3 cut(s)	140, 182, 489
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	4 cut(s)	105, 135, 187, 779
BtsCI	GGATG	2 cut(s)	177, 742
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	3 cut(s)	133, 161, 777
CciI	TCATGA	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	4 cut(s)	44, 297, 493, 778
CpoI	CGGWCCG	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	567
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CspI	CGGWCCG	1 cut(s)	297
CviAII	CATG	2 cut(s)	95, 349
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	7 cut(s)	140, 164, 182, 335, 462, 489, 837
DpnI	GATC	9 cut(s)	115, 311, 518, 591, 603, 699, 798, 804, 851
DpnII	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
DrdI	GACNNNNNNGTC	1 cut(s)	291
DseDI	GACNNNNNNGTC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	4 cut(s)	47, 405, 539, 623
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	273
Eco32I	GATATC	2 cut(s)	193, 634
Eco47I	GGWCC	3 cut(s)	44, 297, 493
Eco57I	CTGAAG	1 cut(s)	806
Eco81I	CCTNAGG	3 cut(s)	140, 182, 489
EcoO109I	RGGNCCY	2 cut(s)	44, 778
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	2 cut(s)	193, 634
EcoT14I	CCWWGG	4 cut(s)	47, 405, 539, 623
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	4 cut(s)	47, 405, 539, 623
FaeI	CATG	2 cut(s)	98, 352
FaiI	YATR	5 cut(s)	84, 96, 275, 350, 606
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	2 cut(s)	94, 348
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	2 cut(s)	283, 674
Fnu4HI	GCNGC	3 cut(s)	401, 726, 845
FokI	GGATG	2 cut(s)	184, 749
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	401, 726, 845
FspBI	CTAG	2 cut(s)	564, 582
GluI	GCNGC	3 cut(s)	401, 726, 845
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	105, 135, 187, 779
HapII	CCGG	2 cut(s)	290, 729
Hin1I	GRCGYC	1 cut(s)	677
Hin1II	CATG	2 cut(s)	98, 352
HincII	GTYRAC	2 cut(s)	532, 675
HindII	GTYRAC	2 cut(s)	532, 675
HinfI	GANTC	2 cut(s)	52, 839
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	2 cut(s)	290, 729
HphI	GGTGA	2 cut(s)	67, 677
Hpy166II	GTNNAC	3 cut(s)	284, 532, 675
Hpy188I	TCNGA	9 cut(s)	239, 257, 297, 336, 631, 685, 708, 786, 807
Hpy188III	TCNNGA	8 cut(s)	196, 215, 313, 349, 587, 599, 749, 800
Hpy8I	GTNNAC	3 cut(s)	284, 532, 675
Hpy99I	CGWCG	4 cut(s)	665, 679, 682, 685
HpyAV	CCTTC	4 cut(s)	19, 95, 350, 791
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	5 cut(s)	37, 159, 244, 725, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	7 cut(s)	140, 164, 182, 335, 462, 489, 837
HpySE526I	ACGT	1 cut(s)	677
Hsp92I	GRCGYC	1 cut(s)	677
Hsp92II	CATG	2 cut(s)	98, 352
Ksp22I	TGATCA	1 cut(s)	697
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	737, 831
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	564, 582
MaeII	ACGT	1 cut(s)	677
MalI	GATC	9 cut(s)	115, 311, 518, 591, 603, 699, 798, 804, 851
MboI	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
MboII	GAAGA	8 cut(s)	74, 163, 233, 433, 436, 570, 646, 799
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	46, 848
MmeI	TCCRAC	4 cut(s)	262, 275, 663, 804
MnlI	CCTC	8 cut(s)	35, 146, 191, 194, 405, 411, 634, 757
MseI	TTAA	2 cut(s)	531, 609
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	290, 729
MspR9I	CCNGG	2 cut(s)	291, 514
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	400
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
NlaIII	CATG	2 cut(s)	98, 352
NlaIV	GGNNCC	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	23
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	3 cut(s)	402, 727, 846
PleI	GAGTC	2 cut(s)	46, 847
PpsI	GAGTC	2 cut(s)	46, 847
PpuMI	RGGWCCY	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	4 cut(s)	44, 297, 493, 778
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	679
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
Rsr2I	CGGWCCG	1 cut(s)	297
RsrII	CGGWCCG	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	531, 609
SatI	GCNGC	3 cut(s)	401, 726, 845
Sau3AI	GATC	9 cut(s)	113, 309, 516, 589, 601, 697, 796, 802, 849
Sau96I	GGNCC	4 cut(s)	44, 297, 493, 778
SchI	GAGTC	2 cut(s)	46, 848
ScrFI	CCNGG	2 cut(s)	291, 514
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	773
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	3 cut(s)	44, 297, 493
SsiI	CCGC	4 cut(s)	262, 398, 401, 650
SspI	AATATT	2 cut(s)	616, 757
SspMI	CTAG	2 cut(s)	564, 582
StyD4I	CCNGG	2 cut(s)	289, 512
StyI	CCWWGG	4 cut(s)	47, 405, 539, 623
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	3 cut(s)	23, 674, 690
TaqII	GACCGA	1 cut(s)	314
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	531, 609
Tru9I	TTAA	2 cut(s)	531, 609
TseI	GCWGC	2 cut(s)	725, 844
TspDTI	ATGAA	2 cut(s)	188, 365
TspGWI	ACGGA	1 cut(s)	649
Tth111I	GACNNNGTC	1 cut(s)	679
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	3 cut(s)	44, 297, 493
XmiI	GTMKAC	2 cut(s)	283, 674
XspI	CTAG	2 cut(s)	564, 582
ZraI	GACGTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.