Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Forward (+)

8628496 .. 8629304

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGAGTTGTGATGTATGGCAACCAGAAAGTCCAGAAATCGACCAATTATACAACACTTCCTCAGAAGAACCGGAGTTCTCGATTGAGATTTTTGCTTCCGTTGATGGAAGTGGGCGCTATGGACAGTTCAATGTGCAGTGCCATCTTTTGACAGATATTAGGGAATCCGGGTATGTAATCTCCATCATGCTTTCTCGGGTGGGGGTTCCCTATCATGTTCAGCCATCAATGATCCAAAAGATTTTTACTGATGCTCACCACATAGCTAATGATCCTAGTAACATGTACCTCAAGATTATTCCGATGGTAGTGTCTCTTAGAGTAGTATCTGATCAGGACCGGATACCTGAATTTCCCGTCCATGAGATAAGGTTTGTCTCCACCAGTAAGTCAGCAATAGAAGAGATGCTTGAGTCGAAGACAATTGAAGGCTGCGAAGAGCAATGCGTGGTGTGTTTGGATGAGATTCCAGTAGGGGATGAAGCCACATGCTTGCCTTGCTCACATGTGTTTCACGAAAGTTGCATAGTGACTTGGCTGGAGAAGAGCAATCTTTGCCCATTGTGTCGATTTGAGATGCCTGCCGCATACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

200

Amino Acids

22.42

Weight (kDa)

4.56

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	148 - 191	5.3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	149 - 191	9.3e-15	Ring finger domain
zf-C3HC4_2	PF13923	149 - 190	4.9e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	149 - 177	7.1e-10	RING-like zinc finger
zf-C3HC4	PF00097	150 - 190	2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	2 cut(s)	229, 269
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	285, 508
AgsI	TTSAA	2 cut(s)	133, 431
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	321, 385
AlwI	GGATC	2 cut(s)	229, 269
Ama87I	CYCGRG	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	5 cut(s)	101, 153, 194, 235, 301
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	321, 385
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	436, 588
BlsI	GCNGC	2 cut(s)	437, 589
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	3 cut(s)	244, 399, 570
BpiI	GAAGAC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	278, 434
BpuMI	CCSGG	1 cut(s)	172
BsaWI	WCCGGW	2 cut(s)	73, 342
Bse1I	ACTGG	2 cut(s)	387, 473
Bse3DI	GCAATG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	469, 487
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	387, 473
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	74, 171, 343
BsmAI	GTCTC	2 cut(s)	321, 385
BsoBI	CYCGRG	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	234, 274, 334
BspACI	CCGC	1 cut(s)	588
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	229, 269
BspQI	GCTCTTC	2 cut(s)	435, 542
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	387, 473
BssMI	GATC	3 cut(s)	234, 274, 334
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	3 cut(s)	399, 435, 542
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	497, 585
BstDEI	CTNAG	2 cut(s)	64, 320
BstF5I	GGATG	2 cut(s)	469, 487
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	237, 277, 337
BstMAI	GTCTC	2 cut(s)	321, 385
BstMBI	GATC	3 cut(s)	234, 274, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	501, 558, 593
BstNSI	RCATGY	3 cut(s)	289, 495, 512
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	469, 487
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	497, 585
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	7 cut(s)	190, 218, 286, 365, 492, 509, 597
CviJI	RGCY	5 cut(s)	226, 269, 435, 488, 541
CviKI_1	RGCY	5 cut(s)	226, 269, 435, 488, 541
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	64, 320
DpnI	GATC	3 cut(s)	236, 276, 336
DpnII	GATC	3 cut(s)	234, 274, 334
Eam1104I	CTCTTC	3 cut(s)	399, 435, 542
EarI	CTCTTC	3 cut(s)	399, 435, 542
Eco47I	GGWCC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	198
FaeI	CATG	7 cut(s)	193, 221, 289, 368, 495, 512, 600
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	7 cut(s)	189, 217, 285, 364, 491, 508, 596
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	436, 588
FokI	GGATG	2 cut(s)	476, 494
Fsp4HI	GCNGC	2 cut(s)	436, 588
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	436, 588
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	121
HapII	CCGG	3 cut(s)	74, 171, 343
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	7 cut(s)	193, 221, 289, 368, 495, 512, 600
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	167, 416, 469
HpaII	CCGG	3 cut(s)	74, 171, 343
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	67, 306, 334
Hpy188III	TCNNGA	5 cut(s)	35, 82, 295, 338, 518
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	139, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	501, 558, 593
HpyF3I	CTNAG	2 cut(s)	64, 320
Hsp92II	CATG	7 cut(s)	193, 221, 289, 368, 495, 512, 600
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	234, 274, 334
LguI	GCTCTTC	2 cut(s)	435, 542
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	3 cut(s)	244, 399, 570
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	281, 532
MalI	GATC	3 cut(s)	236, 276, 336
MboI	GATC	3 cut(s)	234, 274, 334
MboII	GAAGA	5 cut(s)	80, 416, 433, 452, 559
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	3 cut(s)	47, 353, 426
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	2 cut(s)	73, 302
MslI	CAYNNNNRTG	1 cut(s)	595
MspI	CCGG	3 cut(s)	74, 171, 343
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	501, 558, 593
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	234, 274, 334
NlaIII	CATG	7 cut(s)	193, 221, 289, 368, 495, 512, 600
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	3 cut(s)	289, 495, 512
PciI	ACATGT	2 cut(s)	285, 508
PciSI	GCTCTTC	2 cut(s)	435, 542
PfeI	GAWTC	2 cut(s)	167, 469
PkrI	GCNGC	2 cut(s)	437, 589
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PscI	ACATGT	2 cut(s)	285, 508
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	340
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	595
SapI	GCTCTTC	2 cut(s)	435, 542
SatI	GCNGC	2 cut(s)	436, 588
Sau3AI	GATC	3 cut(s)	234, 274, 334
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	4 cut(s)	271, 294, 352, 377
SfaNI	GCATC	3 cut(s)	244, 399, 570
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	2 cut(s)	293, 413
SmoI	CTYRAG	2 cut(s)	293, 413
Sse9I	AATT	3 cut(s)	47, 353, 426
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	42, 83, 419, 571
TasI	AATT	3 cut(s)	47, 353, 426
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	167, 469
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	498
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	3 cut(s)	289, 495, 512
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.