Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Forward (+)

64596162 .. 64597390

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTGTCCGAGTGTGGTTTGCTTGCTTTCCGCTTGCACGTTTTTGAAGGCTTTGGGGAAATGGAAAGACGTCCATGGCTATGGAACTAGACATCTTATTGACAATCATGATATGCCAAGTGATTGTGAAGTATGGCAACCAGAAAATCCAGAAATCGACCAATTATACGACACTTCTTCTGCAGAACCCGAGTTCTTGATTGAGCTTTATGCTTCCATTGACGAAAGTGTGCACTATGAAAAGTTCAATGCGCGGTGCCACCTTTTGACAGATAGTAGGACATCCTGGTCTGTAATATCCGTCATGCTTTCTCAGGTGGGGGTTCCCTATCATGTTCAGCCATTAATGATCCAAAAGATTTCGACTGATGCTCACCAGATAGCCAATGATCCTGGTAACATGTACCTCAAGACTATTCCGATGGTAGTGTCTCTTAGAGTACCTCAAGACGGATTGCCTGAATTTCCCGTCCATGAGATAAGGTTTGTGCCCACCAGTAAGTCAGCAATAGAAGAGATGCTGGAGTCGAGGGTGAAAATTGAAGGTTGCGAAGAGCAATGCATGGTATGTTTGGATGAAATTCTGATAGGGGGTGAAGCCACATGCATGCCTTGCTCGCATGTGTTTCACGAAAGTTGTATAGTGAATTGGCTGCAGAAGAGCAATCTTTGCCCATTGTGTCGATTTGAGATGCCTGCTGAATACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

236

Amino Acids

26.71

Weight (kDa)

4.85

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	177 - 231	2.4e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	185 - 228	1.6e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	186 - 228	9.8e-14	Ring finger domain
zf-C3HC4_2	PF13923	186 - 227	1.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	186 - 214	1.1e-08	RING-like zinc finger
zf-C3HC4	PF00097	187 - 227	3.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AatII	GACGTC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	30, 253
AclWI	GGATC	2 cut(s)	343, 383
AcsI	RAATTY	2 cut(s)	461, 579
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	404, 441
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	46, 247, 542
AjnI	CCWGG	2 cut(s)	284, 391
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	343, 383
Ama87I	CYCGRG	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	2 cut(s)	461, 579
AseI	ATTAAT	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	365, 544, 605
AvaI	CYCGRG	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	234, 492
BanI	GGYRCC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	286, 393
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	180, 653
BisI	GCNGC	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	2 cut(s)	286, 393
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	257, 324
BmrFI	CCNGG	2 cut(s)	286, 393
BmsI	GCATC	3 cut(s)	358, 507, 681
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	392, 429
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	2 cut(s)	286, 393
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	281, 580
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	495
BseSI	GKGCMC	2 cut(s)	234, 492
BseXI	GCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	435
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	234, 492
Bsp143I	GATC	2 cut(s)	348, 388
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	2 cut(s)	30, 253
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	257, 324
BspMAI	CTGCAG	2 cut(s)	184, 657
BspPI	GGATC	2 cut(s)	343, 383
BspQI	GCTCTTC	2 cut(s)	546, 653
BspT107I	GGYRCC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	348, 388
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	286, 393
Bst6I	CTCTTC	3 cut(s)	507, 546, 653
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	612, 669
BstC8I	GCNNGC	5 cut(s)	23, 34, 608, 617, 696
BstDEI	CTNAG	2 cut(s)	312, 434
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	281, 580
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	351, 391
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	2 cut(s)	348, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	612, 616, 669, 704
BstNI	CCWGG	2 cut(s)	286, 393
BstNSI	RCATGY	4 cut(s)	403, 606, 610, 623
BstSCI	CCNGG	2 cut(s)	284, 391
BstSFI	CTRYAG	2 cut(s)	180, 653
BstSLI	GKGCMC	2 cut(s)	234, 492
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	639
BstXI	CCANNNNNNTGG	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	281, 580
Cac8I	GCNNGC	5 cut(s)	23, 34, 608, 617, 696
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	403, 440
CviJI	RGCY	7 cut(s)	50, 78, 205, 340, 383, 599, 652
CviKI_1	RGCY	7 cut(s)	50, 78, 205, 340, 383, 599, 652
CviQI	GTAC	2 cut(s)	403, 440
DdeI	CTNAG	2 cut(s)	312, 434
DpnI	GATC	2 cut(s)	350, 390
DpnII	GATC	2 cut(s)	348, 388
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	507, 546, 653
EarI	CTCTTC	3 cut(s)	507, 546, 653
Eco130I	CCWWGG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	284, 391
EcoT14I	CCWWGG	1 cut(s)	73
EcoT22I	ATGCAT	2 cut(s)	563, 608
ErhI	CCWWGG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	2 cut(s)	268, 587
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	524
HphI	GGTGA	3 cut(s)	365, 544, 605
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	9, 420, 585
Hpy188III	TCNNGA	6 cut(s)	107, 149, 196, 409, 446, 629
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	40, 536
HpyCH4IV	ACGT	2 cut(s)	38, 69
HpyCH4V	TGCA	6 cut(s)	36, 182, 232, 561, 606, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	612, 616, 669, 704
HpyF3I	CTNAG	2 cut(s)	312, 434
HpySE526I	ACGT	2 cut(s)	38, 69
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	348, 388
LguI	GCTCTTC	2 cut(s)	546, 653
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	3 cut(s)	358, 507, 681
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	38, 69
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	2 cut(s)	350, 390
MboI	GATC	2 cut(s)	348, 388
MboII	GAAGA	4 cut(s)	168, 524, 563, 670
MhlI	GDGCHC	2 cut(s)	234, 492
MluCI	AATT	5 cut(s)	161, 461, 537, 579, 646
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	3 cut(s)	416, 453, 522
Mph1103I	ATGCAT	2 cut(s)	563, 608
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	78, 605
MspR9I	CCNGG	2 cut(s)	286, 393
MvaI	CCWGG	2 cut(s)	286, 393
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	612, 616, 669, 704
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	348, 388
NlaIV	GGNNCC	2 cut(s)	257, 324
NsiI	ATGCAT	2 cut(s)	563, 608
NspI	RCATGY	4 cut(s)	403, 606, 610, 623
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	106
PciI	ACATGT	1 cut(s)	399
PciSI	GCTCTTC	2 cut(s)	546, 653
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	284, 391
PspGI	CCWGG	2 cut(s)	284, 391
PspN4I	GGNNCC	2 cut(s)	257, 324
PstI	CTGCAG	2 cut(s)	184, 657
RsaI	GTAC	2 cut(s)	404, 441
RsaNI	GTAC	2 cut(s)	403, 440
RseI	CAYNNNNRTG	2 cut(s)	78, 605
SapI	GCTCTTC	2 cut(s)	546, 653
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	2 cut(s)	348, 388
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	286, 393
SduI	GDGCHC	2 cut(s)	234, 492
SetI	ASST	9 cut(s)	41, 72, 207, 264, 318, 408, 445, 485, 547
SfaNI	GCATC	3 cut(s)	358, 507, 681
SfcI	CTRYAG	2 cut(s)	180, 653
SmiMI	CAYNNNNRTG	2 cut(s)	78, 605
SmlI	CTYRAG	2 cut(s)	407, 444
SmoI	CTYRAG	2 cut(s)	407, 444
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	5 cut(s)	161, 461, 537, 579, 646
SsiI	CCGC	2 cut(s)	30, 253
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	284, 391
StyI	CCWWGG	1 cut(s)	73
TaiI	ACGT	2 cut(s)	41, 72
TaqI	TCGA	4 cut(s)	156, 362, 527, 682
TasI	AATT	5 cut(s)	161, 461, 537, 579, 646
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	252, 591
TspGWI	ACGGA	2 cut(s)	289, 465
VneI	GTGCAC	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	2 cut(s)	461, 579
XceI	RCATGY	4 cut(s)	403, 606, 610, 623
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	70
Zsp2I	ATGCAT	2 cut(s)	563, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.