Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Forward (+)

57087412 .. 57090620

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0436700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGCACAGAGACCAGAACAAGTGGAAGTCGAGGTCGACGGTACCGGAGAAAGAAGCCCGAGAAACACAGTTGGTGGGGAGTCTTTCCGGCGAAGAAGCAAAGATCAGGTACCGGAGGCTGCACCCAACTCGGGTGGACCTCGGGTTCTGAGGTGTAGCTCAAGCGCTTCGTTTTCTAGTAAAGGTTGGAAACCCCCAATGAGCAAGACCAGGTCGAGGCTTATTGACCCACTTGAGGAACGGTGTCCCAAATCAGATAGGTTGGTCCATTCCGGACGACTGGTCGGAAAACATGAAGAGGACGATGGTTTTGACGTTGATGATATACCCGAAGAGTACAAGAAGATGAAGTTCAACACTTTGACGTTACTTCAATGGGTGAGTCTTGTTTGTGTTTTAGGTGCTTTGGTTTGTAATCTTTGGATTCCGATGATAAGGAGACTAAGGCCGTGGGATCTTCCGATTTGGAAATGGGAGTTGTTGGTTTTGGCATTGATTTGTGGGCGTTTGGTTTCGGGTTGGGGGATTCGGGTGGTTGTGTTCTTTGTGGAGAGAAATTTTCTGATGAGGAAAAGGGTGTTGTATTTTGTTTATGGGTTGAGAAAGGCTGTGCAGAATTGTCTCTGGTTGGGTTTGGTTTTGGTTGTGTGGCATTTGATTTTTGATAAAAAGGTTGAGAAGGAGACCAAGAGTAGGATCTTACCTTATGTGACTAGGACACTAGTGTGTTTTCTGGTTGCTACTTTGATTTGGCTTGTGAAAACATTACTTGTCAAGGTCCTTGCTTTGTCTTTCCATGTCAATGCCTTTTTCGAACGAATTCGGGAGGCTTTGTTCAATCAGTATGTGATTGAGACGCTTTCTGGTCCTCCTTTGTTCGAAAGGCAGCAGATACAAGAGGAAGAGGAAAAGGCTGCCGCAGAGATTAGGGAGTTTCAGAAGGCAGGGGCTTGTATGCCTCGCGAGCTCAGGGCAACTCTTCTTCCAAGGAATGGGCCGGTTGTGGGGAGTGGTGGACTGCAGAGTAGCCCCACAATCGGGAGGAGTCCTAGATTTTCTTCTACGCCTACAACGCCTAAGTCTGTGAAGCAAGATGAGGAGATCCCAGTTAACCACTTGAATAAGCTAAATCAGAAGAATGTATCAGCTTGGAATATGAGGCGAATGATGAATATCATCCGGCACGGCTCCTTAACCACTCTAGATGAACAGATACTGGATGTTGAGGACGACTCTTCTGTGGAGATCAAAACTGAATGCCAGGCAAAAGAGGCAGCGAGGAAGATATTCCTCAAAGTAGCCAAGCCAGGGGCCAAATGCATTTTCCTTGACGATCTGATGCTTTTTATGAATAAAGATGAAGCCTTGAAGACAATTGTTCTCTTTGGAGCAGCAGGTGAACATGATGGGATCAGCAAGTCTTCTCTTAAACATTGGATGGTGAGAGCATTTAGAGAGAGAAGAGCTCTATCATTGTCTCTCAATGATACGAAAACAGCAGTGGACGAACTCCACAATTTATTAAACATTCTTGTGGGTGTGATCATTGTGATAACCTGGCTGATTATACTTGGGATTCCAATCACCCATTTCCTTGTGTTCATAAGCTCACAGATTCTTTTGGTTGTATTTATCTTTGGGAACACATGCAAGACAGTTTTTGAAGCAATAATCTTTCTGTTTGTAATGCACCCATATGATGTGGGTGATCGTTGTGAGGTGGATGGAGTCCAGTTGGTAGTTGAGGAGATGAATCTATTAACAACAGTCTTTCTGAAGTTTGATAACCAGAAGGTTATATACCCCAACAGTGTTCTTGCTACCAAGCCGATTGCTAATTATTATCGTAGTCCTGACATGGGAGATGCTGTTGATTTCTGTGTTCATATATCAACTCCATTGGAAAAGTTGAACATTGTGAAAGAAAGAATCATAGGGTACATTGAAACCAGGACTGACCACTGGCACCCAGCACCAATGGTGGTCTTGAGGGATGTGGAGGAACTGAACAAACTGAAGATATCAGTGTGGCTTACACACAAAATGAACCACCAGGACATGGTGGAGAGATGGAGTCGTAGAGCCCTTTTGATTGAAGCCATGGTCAAAGTGTTCAAAGAGCTTGACATTCAGTATCGCTTGCTGCCTATCGATGTCAATGTCCGAAACATGCCAAGTTTAACCTCCAAGCCCCCTTCAAATTGGACTGCTTGTGCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

740

Amino Acids

84.57

Weight (kDa)

9.04

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	558 - 615	5.5e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1385
Acc36I	ACCTGC	1 cut(s)	1385
Acc65I	GGTACC	2 cut(s)	41, 109
AccB1I	GGYRCC	3 cut(s)	41, 109, 1965
AccB7I	CCANNNNNTGG	2 cut(s)	992, 2059
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	963
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	1 cut(s)	918
AclWI	GGATC	4 cut(s)	462, 704, 1096, 1418
AcsI	RAATTY	2 cut(s)	556, 819
AcuI	CTGAAG	2 cut(s)	1796, 2036
AfaI	GTAC	4 cut(s)	43, 111, 338, 1940
AfeI	AGCGCT	1 cut(s)	166
AhdI	GACNNNNNGTC	1 cut(s)	281
AhlI	ACTAGT	1 cut(s)	721
AjnI	CCWGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
AjuI	GAANNNNNNNTTGG	2 cut(s)	1307, 1339
AleI	CACNNNNGTG	1 cut(s)	724
AloI	GAACNNNNNNTCC	4 cut(s)	129, 161, 818, 850
AluBI	AGCT	7 cut(s)	159, 967, 1126, 1148, 1466, 1608, 2122
AluI	AGCT	7 cut(s)	159, 967, 1126, 1148, 1466, 1608, 2122
Alw21I	GWGCWC	3 cut(s)	969, 1468, 2218
Alw26I	GTCTC	6 cut(s)	4, 433, 626, 677, 848, 1482
AlwI	GGATC	4 cut(s)	462, 704, 1096, 1418
AlwNI	CAGNNNCTG	1 cut(s)	1216
Ama87I	CYCGRG	3 cut(s)	58, 130, 141
Aor13HI	TCCGGA	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	446, 995, 1311
ApeKI	GCWGC	6 cut(s)	119, 886, 914, 1274, 1391, 2143
ApoI	RAATTY	2 cut(s)	556, 819
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
Asp700I	GAANNNNTTC	2 cut(s)	819, 1286
Asp718I	GGTACC	2 cut(s)	41, 109
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	6 cut(s)	137, 265, 778, 866, 995, 1311
AsuHPI	GGTGA	5 cut(s)	391, 1409, 1453, 1576, 1718
AsuII	TTCGAA	2 cut(s)	813, 879
AvaI	CYCGRG	3 cut(s)	58, 130, 141
AvaII	GGWCC	4 cut(s)	137, 265, 778, 866
BanI	GGYRCC	3 cut(s)	41, 109, 1965
BanII	GRGCYC	3 cut(s)	969, 1468, 2086
BarI	GAAGNNNNNNTAC	2 cut(s)	1784, 1816
BbsI	GAAGAC	2 cut(s)	1376, 1413
Bbv12I	GWGCWC	3 cut(s)	969, 1468, 2218
BbvI	GCAGC	6 cut(s)	106, 898, 901, 1286, 1403, 2130
BccI	CCATC	5 cut(s)	299, 1400, 1432, 1718, 2064
BceAI	ACGGC	2 cut(s)	433, 1201
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciT130I	CCWGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
BclI	TGATCA	1 cut(s)	1542
BcoDI	GTCTC	6 cut(s)	4, 433, 626, 677, 848, 1482
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	5 cut(s)	177, 714, 722, 1050, 1202
BfmI	CTRYAG	1 cut(s)	1019
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	1385
BisI	GCNGC	7 cut(s)	120, 887, 915, 918, 1275, 1392, 2144
BlsI	GCNGC	7 cut(s)	121, 888, 916, 919, 1276, 1393, 2145
Bme1390I	CCNGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
Bme18I	GGWCC	4 cut(s)	137, 265, 778, 866
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmeT110I	CYCGRG	3 cut(s)	58, 130, 141
BmgT120I	GGNCC	6 cut(s)	137, 265, 778, 866, 995, 1311
BmiI	GGNNCC	5 cut(s)	43, 111, 1189, 1312, 1967
BmrFI	CCNGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
BmrI	ACTGGG	1 cut(s)	1100
BmsI	GCATC	2 cut(s)	1329, 1855
BmuI	ACTGGG	1 cut(s)	1100
BpiI	GAAGAC	2 cut(s)	1376, 1413
BplI	GAGNNNNNCTC	4 cut(s)	1217, 1249, 1450, 1482
Bpu10I	CCTNAGC	1 cut(s)	968
Bpu14I	TTCGAA	2 cut(s)	813, 879
BpuEI	CTTGAG	3 cut(s)	145, 254, 2008
Bsa29I	ATCGAT	1 cut(s)	2151
BsaBI	GATNNNNATC	2 cut(s)	1172, 1580
BsaI	GGTCTC	2 cut(s)	4, 677
BsaJI	CCNNGG	5 cut(s)	140, 449, 986, 1307, 2100
BsaWI	WCCGGW	3 cut(s)	44, 112, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	818, 848, 1854, 1884
Bse118I	RCCGGY	1 cut(s)	997
Bse1I	ACTGG	5 cut(s)	285, 1106, 1221, 1732, 1967
Bse8I	GATNNNNATC	2 cut(s)	1172, 1580
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
BseCI	ATCGAT	1 cut(s)	2151
BseDI	CCNNGG	5 cut(s)	140, 449, 986, 1307, 2100
BseGI	GGATG	5 cut(s)	1176, 1225, 1443, 1729, 1999
BseJI	GATNNNNATC	2 cut(s)	1172, 1580
BseMII	CTCAG	2 cut(s)	140, 982
BseNI	ACTGG	5 cut(s)	285, 1106, 1221, 1732, 1967
BseRI	GAGGAG	3 cut(s)	1057, 1112, 1760
BseXI	GCAGC	6 cut(s)	106, 898, 901, 1286, 1403, 2130
BseYI	CCCAGC	1 cut(s)	1969
BsgI	GTGCAG	2 cut(s)	105, 632
Bsh1236I	CGCG	1 cut(s)	963
BshFI	GGCC	3 cut(s)	448, 997, 1313
BshNI	GGYRCC	3 cut(s)	41, 109, 1965
BshVI	ATCGAT	1 cut(s)	2151
BsiHKAI	GWGCWC	3 cut(s)	969, 1468, 2218
BsiHKCI	CYCGRG	3 cut(s)	58, 130, 141
BsiSI	CCGG	6 cut(s)	45, 88, 113, 273, 998, 1180
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	6 cut(s)	4, 433, 626, 677, 848, 1482
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	1262
BsnI	GGCC	3 cut(s)	448, 997, 1313
Bso31I	GGTCTC	2 cut(s)	4, 677
BsoBI	CYCGRG	3 cut(s)	58, 130, 141
Bsp119I	TTCGAA	2 cut(s)	813, 879
Bsp1286I	GDGCHC	4 cut(s)	969, 1468, 2086, 2218
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
Bsp19I	CCATGG	1 cut(s)	2100
Bsp68I	TCGCGA	1 cut(s)	963
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	3 cut(s)	448, 997, 1313
BspCNI	CTCAG	2 cut(s)	141, 981
BspDI	ATCGAT	1 cut(s)	2151
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	963
BspLI	GGNNCC	5 cut(s)	43, 111, 1189, 1312, 1967
BspMAI	CTGCAG	1 cut(s)	1023
BspMI	ACCTGC	1 cut(s)	1385
BspPI	GGATC	4 cut(s)	462, 704, 1096, 1418
BspQI	GCTCTTC	1 cut(s)	1456
BspT104I	TTCGAA	2 cut(s)	813, 879
BspT107I	GGYRCC	3 cut(s)	41, 109, 1965
BspTNI	GGTCTC	2 cut(s)	4, 677
BsrFI	RCCGGY	1 cut(s)	997
BsrI	ACTGG	5 cut(s)	285, 1106, 1221, 1732, 1967
BssAI	RCCGGY	1 cut(s)	997
BssECI	CCNNGG	5 cut(s)	140, 449, 986, 1307, 2100
BssMI	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
BssT1I	CCWWGG	2 cut(s)	986, 2100
Bst2UI	CCWGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
Bst4CI	ACNGT	6 cut(s)	41, 70, 243, 1657, 1768, 1811
Bst6I	CTCTTC	6 cut(s)	291, 327, 897, 984, 1240, 1456
BstBI	TTCGAA	2 cut(s)	813, 879
BstC8I	GCNNGC	2 cut(s)	965, 2141
BstDEI	CTNAG	4 cut(s)	149, 443, 968, 1077
BstDSI	CCRYGG	2 cut(s)	449, 2100
BstF5I	GGATG	5 cut(s)	1176, 1225, 1443, 1729, 1999
BstFNI	CGCG	1 cut(s)	963
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	9 cut(s)	106, 457, 699, 1104, 1248, 1336, 1413, 1545, 1711
BstMAI	GTCTC	6 cut(s)	4, 433, 626, 677, 848, 1482
BstMBI	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
BstMWI	GCNNNNNNNGC	3 cut(s)	964, 1072, 1271
BstNI	CCWGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
BstNSI	RCATGY	2 cut(s)	1650, 2173
BstSCI	CCNGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
BstSFI	CTRYAG	1 cut(s)	1019
BstUI	CGCG	1 cut(s)	963
BstV1I	GCAGC	6 cut(s)	106, 898, 901, 1286, 1403, 2130
BstV2I	GAAGAC	2 cut(s)	1376, 1413
BstX2I	RGATCY	3 cut(s)	454, 696, 1101
BstYI	RGATCY	3 cut(s)	454, 696, 1101
Bsu15I	ATCGAT	1 cut(s)	2151
BsuRI	GGCC	3 cut(s)	448, 997, 1313
BsuTUI	ATCGAT	1 cut(s)	2151
BtgI	CCRYGG	2 cut(s)	449, 2100
BtsCI	GGATG	5 cut(s)	1176, 1225, 1443, 1729, 1999
BtsI	GCAGTG	1 cut(s)	1506
BtsIMutI	CAGTG	4 cut(s)	1506, 1816, 1960, 2031
BtuMI	TCGCGA	1 cut(s)	963
BveI	ACCTGC	1 cut(s)	1385
Cac8I	GCNNGC	2 cut(s)	965, 2141
CaiI	CAGNNNCTG	1 cut(s)	1216
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	997
Cfr13I	GGNCC	6 cut(s)	137, 265, 778, 866, 995, 1311
ClaI	ATCGAT	1 cut(s)	2151
CseI	GACGC	1 cut(s)	865
CsiI	ACCWGGT	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	42, 110, 337, 1939
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	8 cut(s)	293, 797, 1403, 1647, 1858, 2059, 2101, 2170
CviQI	GTAC	4 cut(s)	42, 110, 337, 1939
DdeI	CTNAG	4 cut(s)	149, 443, 968, 1077
DpnI	GATC	9 cut(s)	105, 456, 698, 1103, 1247, 1335, 1412, 1544, 1710
DpnII	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
DriI	GACNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	6 cut(s)	291, 327, 897, 984, 1240, 1456
Eam1105I	GACNNNNNGTC	1 cut(s)	281
EarI	CTCTTC	6 cut(s)	291, 327, 897, 984, 1240, 1456
Ecl136II	GAGCTC	2 cut(s)	967, 1466
Eco130I	CCWWGG	2 cut(s)	986, 2100
Eco24I	GRGCYC	3 cut(s)	969, 1468, 2086
Eco31I	GGTCTC	2 cut(s)	4, 677
Eco32I	GATATC	1 cut(s)	2022
Eco47I	GGWCC	4 cut(s)	137, 265, 778, 866
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	2 cut(s)	967, 1466
Eco57I	CTGAAG	2 cut(s)	1796, 2036
Eco88I	CYCGRG	3 cut(s)	58, 130, 141
EcoICRI	GAGCTC	2 cut(s)	967, 1466
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	819
EcoRII	CCWGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
EcoRV	GATATC	1 cut(s)	2022
EcoT14I	CCWWGG	2 cut(s)	986, 2100
EcoT22I	ATGCAT	1 cut(s)	1322
EcoT38I	GRGCYC	3 cut(s)	969, 1468, 2086
ErhI	CCWWGG	2 cut(s)	986, 2100
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	8 cut(s)	296, 800, 1406, 1650, 1861, 2062, 2104, 2173
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	8 cut(s)	292, 796, 1402, 1646, 1857, 2058, 2100, 2169
FauNDI	CATATG	1 cut(s)	1696
FbaI	TGATCA	1 cut(s)	1542
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	7 cut(s)	120, 887, 915, 918, 1275, 1392, 2144
FokI	GGATG	5 cut(s)	1163, 1232, 1450, 1736, 2006
FriOI	GRGCYC	3 cut(s)	969, 1468, 2086
Fsp4HI	GCNGC	7 cut(s)	120, 887, 915, 918, 1275, 1392, 2144
FspBI	CTAG	5 cut(s)	177, 714, 722, 1050, 1202
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	7 cut(s)	120, 887, 915, 918, 1275, 1392, 2144
GsaI	CCCAGC	1 cut(s)	1973
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	448, 997, 1313
HapII	CCGG	6 cut(s)	45, 88, 113, 273, 998, 1180
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	8 cut(s)	296, 800, 1406, 1650, 1861, 2062, 2104, 2173
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	37, 1111
HindII	GTYRAC	2 cut(s)	37, 1111
HpaI	GTTAAC	1 cut(s)	1111
HpaII	CCGG	6 cut(s)	45, 88, 113, 273, 998, 1180
HphI	GGTGA	5 cut(s)	391, 1409, 1453, 1576, 1718
Hpy166II	GTNNAC	6 cut(s)	37, 137, 1016, 1111, 1400, 1504
Hpy188III	TCNNGA	7 cut(s)	273, 824, 962, 1039, 1202, 1853, 1987
Hpy8I	GTNNAC	6 cut(s)	37, 137, 1016, 1111, 1400, 1504
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	673, 934, 1786, 2205
HpyCH4III	ACNGT	6 cut(s)	41, 70, 243, 1657, 1768, 1811
HpyCH4IV	ACGT	2 cut(s)	315, 365
HpyCH4V	TGCA	6 cut(s)	122, 613, 1021, 1320, 1650, 1690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	964, 1072, 1271
HpyF3I	CTNAG	4 cut(s)	149, 443, 968, 1077
HpySE526I	ACGT	2 cut(s)	315, 365
Hsp92II	CATG	8 cut(s)	296, 800, 1406, 1650, 1861, 2062, 2104, 2173
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	272
KpnI	GGTACC	2 cut(s)	45, 113
Ksp22I	TGATCA	1 cut(s)	1542
KspAI	GTTAAC	1 cut(s)	1111
Kzo9I	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
LguI	GCTCTTC	1 cut(s)	1456
LmnI	GCTCC	3 cut(s)	1193, 1388, 2221
Lsp1109I	GCAGC	6 cut(s)	106, 898, 901, 1286, 1403, 2130
LweI	GCATC	2 cut(s)	1329, 1855
MabI	ACCWGGT	1 cut(s)	209
MaeI	CTAG	5 cut(s)	177, 714, 722, 1050, 1202
MaeII	ACGT	2 cut(s)	315, 365
MaeIII	GTNAC	2 cut(s)	366, 709
MalI	GATC	9 cut(s)	105, 456, 698, 1103, 1247, 1335, 1412, 1544, 1710
MboI	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
MfeI	CAATTG	1 cut(s)	1374
MflI	RGATCY	3 cut(s)	454, 696, 1101
MhlI	GDGCHC	4 cut(s)	969, 1468, 2086, 2218
MluCI	AATT	7 cut(s)	556, 616, 819, 1374, 1516, 1837, 2200
MlyI	GAGTC	6 cut(s)	89, 391, 1054, 1226, 1737, 2083
MmeI	TCCRAC	2 cut(s)	167, 265
Mph1103I	ATGCAT	1 cut(s)	1322
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	2 cut(s)	819, 1286
MseI	TTAA	6 cut(s)	1110, 1193, 1428, 1523, 1760, 2180
MslI	CAYNNNNRTG	4 cut(s)	724, 801, 1532, 1695
MspI	CCGG	6 cut(s)	45, 88, 113, 273, 998, 1180
MspR9I	CCNGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
MunI	CAATTG	1 cut(s)	1374
Mva1269I	GAATGC	1 cut(s)	1262
MvaI	CCWGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
MvnI	CGCG	1 cut(s)	963
MwoI	GCNNNNNNNGC	3 cut(s)	964, 1072, 1271
NcoI	CCATGG	1 cut(s)	2100
NdeI	CATATG	1 cut(s)	1696
NdeII	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
NlaIII	CATG	8 cut(s)	296, 800, 1406, 1650, 1861, 2062, 2104, 2173
NlaIV	GGNNCC	5 cut(s)	43, 111, 1189, 1312, 1967
NmuCI	GTSAC	1 cut(s)	709
NruI	TCGCGA	1 cut(s)	963
NsiI	ATGCAT	1 cut(s)	1322
NspI	RCATGY	2 cut(s)	1650, 2173
NspV	TTCGAA	2 cut(s)	813, 879
OliI	CACNNNNGTG	1 cut(s)	724
PaqCI	CACCTGC	1 cut(s)	1385
PciSI	GCTCTTC	1 cut(s)	1456
PctI	GAATGC	1 cut(s)	1262
PdmI	GAANNNNTTC	2 cut(s)	819, 1286
PfeI	GAWTC	6 cut(s)	424, 526, 1576, 1615, 1753, 1929
PflFI	GACNNNGTC	1 cut(s)	211
PflMI	CCANNNNNTGG	2 cut(s)	992, 2059
PkrI	GCNGC	7 cut(s)	121, 888, 916, 919, 1276, 1393, 2145
PleI	GAGTC	6 cut(s)	88, 390, 1053, 1226, 1736, 2082
PpsI	GAGTC	6 cut(s)	88, 390, 1053, 1226, 1736, 2082
PpuMI	RGGWCCY	1 cut(s)	778
Psp124BI	GAGCTC	2 cut(s)	969, 1468
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
PspFI	CCCAGC	1 cut(s)	1969
PspGI	CCWGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
PspN4I	GGNNCC	5 cut(s)	43, 111, 1189, 1312, 1967
PspPI	GGNCC	6 cut(s)	137, 265, 778, 866, 995, 1311
PspPPI	RGGWCCY	1 cut(s)	778
PstI	CTGCAG	1 cut(s)	1023
PstNI	CAGNNNCTG	1 cut(s)	1216
PsuI	RGATCY	3 cut(s)	454, 696, 1101
PsyI	GACNNNGTC	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	963
RsaI	GTAC	4 cut(s)	43, 111, 338, 1940
RsaNI	GTAC	4 cut(s)	42, 110, 337, 1939
RseI	CAYNNNNRTG	4 cut(s)	724, 801, 1532, 1695
SacI	GAGCTC	2 cut(s)	969, 1468
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	1456
SaqAI	TTAA	6 cut(s)	1110, 1193, 1428, 1523, 1760, 2180
SatI	GCNGC	7 cut(s)	120, 887, 915, 918, 1275, 1392, 2144
Sau3AI	GATC	9 cut(s)	103, 454, 696, 1101, 1245, 1333, 1410, 1542, 1708
Sau96I	GGNCC	6 cut(s)	137, 265, 778, 866, 995, 1311
SchI	GAGTC	6 cut(s)	89, 391, 1054, 1226, 1737, 2083
ScrFI	CCNGG	6 cut(s)	211, 1262, 1308, 1558, 1951, 2054
SduI	GDGCHC	4 cut(s)	969, 1468, 2086, 2218
SexAI	ACCWGGT	1 cut(s)	209
SfaNI	GCATC	2 cut(s)	1329, 1855
SfcI	CTRYAG	1 cut(s)	1019
SfuI	TTCGAA	2 cut(s)	813, 879
SinI	GGWCC	4 cut(s)	137, 265, 778, 866
SmiMI	CAYNNNNRTG	4 cut(s)	724, 801, 1532, 1695
SmlI	CTYRAG	3 cut(s)	160, 233, 1987
SmoI	CTYRAG	3 cut(s)	160, 233, 1987
SpeI	ACTAGT	1 cut(s)	721
Sse9I	AATT	7 cut(s)	556, 616, 819, 1374, 1516, 1837, 2200
SsiI	CCGC	1 cut(s)	918
SspMI	CTAG	5 cut(s)	177, 714, 722, 1050, 1202
SstI	GAGCTC	2 cut(s)	969, 1468
StyD4I	CCNGG	6 cut(s)	209, 1260, 1306, 1556, 1949, 2052
StyI	CCWWGG	2 cut(s)	986, 2100
TaaI	ACNGT	6 cut(s)	41, 70, 243, 1657, 1768, 1811
TaiI	ACGT	2 cut(s)	318, 368
TaqI	TCGA	6 cut(s)	30, 36, 215, 813, 879, 2151
TasI	AATT	7 cut(s)	556, 616, 819, 1374, 1516, 1837, 2200
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	6 cut(s)	424, 526, 1576, 1615, 1753, 1929
Tru1I	TTAA	6 cut(s)	1110, 1193, 1428, 1523, 1760, 2180
Tru9I	TTAA	6 cut(s)	1110, 1193, 1428, 1523, 1760, 2180
TscAI	CASTG	4 cut(s)	1506, 1816, 1967, 2031
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	6 cut(s)	119, 886, 914, 1274, 1391, 2143
Tsp45I	GTSAC	1 cut(s)	709
TspRI	CASTG	4 cut(s)	1506, 1816, 1967, 2031
Tth111I	GACNNNGTC	1 cut(s)	211
Van91I	CCANNNNNTGG	2 cut(s)	992, 2059
VpaK11BI	GGWCC	4 cut(s)	137, 265, 778, 866
XapI	RAATTY	2 cut(s)	556, 819
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	2 cut(s)	1650, 2173
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	2 cut(s)	819, 1286
XspI	CTAG	5 cut(s)	177, 714, 722, 1050, 1202
Zsp2I	ATGCAT	1 cut(s)	1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.