Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Reverse (-)

28698214 .. 28698816

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1196800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCAAGCAACGGAGTCTTTACCAGCTGTGAAGTATGGCAGGAAGGCAGTGAACTTGCCGATGACAGTTCCCCGACAAAACCCGAGTTCTTGATCGATATGTATGCTCAATATTCAAGGTACCCTCCAAGCTTCCACGAGTTCAAGGAGCAATGCCACATTCTAACAGAGAGCATAACATCCTGGTCTGTGATATCCAACATGCTTTCGCAGGCGTCGGTTCCCCACCAAGTTCAGCCGTCCATGATCCAGGTGATTTCTACTCGCGCTCGTGAAATCGCCAGTCATCCTGAGAACATGAACCGCAAGACTATTCGGATGGTAGTGCATCGTACAATTGGTGATTATATGTTGCAGTTTGTGCGGACAAAAAGTACATCGATTGAGGAGTTGGAGAGAGTTAAAATCGAAGGCTGCGGGAAGCAATGTGTTATATGTTTGGAAGAGATGCAGTGTGGTTCTGAAGCGATTCGCGTGCCTTGCTCGCACGAGTATCACGAGAGTTGCATAGTGAAATGGCTGAAGATGAGTCTCCTCTGTCCGCTGTGCCGGTTTGAGATGTCTGCCAATCCTCATGATAAATTATTTGTAGCTAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

5.9

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	141 - 184	7.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	142 - 184	2.2e-12	Ring finger domain
zf-RING_11	PF17123	142 - 170	2.5e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	142 - 183	1.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	143 - 183	5.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	120
AccII	CGCG	2 cut(s)	267, 474
AciI	CCGC	4 cut(s)	304, 364, 417, 542
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	483, 542
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	122, 334, 376
AgsI	TTSAA	2 cut(s)	117, 145
AjnI	CCWGG	2 cut(s)	182, 249
AluBI	AGCT	3 cut(s)	27, 132, 593
AluI	AGCT	3 cut(s)	27, 132, 593
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	265, 353
AvaI	CYCGRG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	120
BauI	CACGAG	4 cut(s)	137, 270, 488, 497
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 457, 491
BciT130I	CCWGG	2 cut(s)	184, 251
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	184, 251
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	122, 222
BmrFI	CCNGG	2 cut(s)	184, 251
BmsI	GCATC	2 cut(s)	337, 438
Bsa29I	ATCGAT	2 cut(s)	96, 380
BsaHI	GRCGYC	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	2 cut(s)	158, 431
BseBI	CCWGG	2 cut(s)	184, 251
BseCI	ATCGAT	2 cut(s)	96, 380
BseGI	GGATG	3 cut(s)	179, 286, 324
BseMI	GCAATG	2 cut(s)	158, 431
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	401, 524
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	267, 474
BshNI	GGYRCC	1 cut(s)	120
BshVI	ATCGAT	2 cut(s)	96, 380
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	93, 246
BspACI	CCGC	4 cut(s)	304, 364, 417, 542
BspCNI	CTCAG	1 cut(s)	283
BspDI	ATCGAT	2 cut(s)	96, 380
BspFNI	CGCG	2 cut(s)	267, 474
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	122, 222
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	158, 431
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	549
BssMI	GATC	2 cut(s)	93, 246
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	4 cut(s)	137, 270, 488, 497
Bst2BI	CACGAG	4 cut(s)	137, 270, 488, 497
Bst2UI	CCWGG	2 cut(s)	184, 251
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	213, 476, 485
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	179, 286, 324
BstFNI	CGCG	2 cut(s)	267, 474
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	96, 249
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	2 cut(s)	93, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 480, 484
BstNI	CCWGG	2 cut(s)	184, 251
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	182, 249
BstUI	CGCG	2 cut(s)	267, 474
BstV1I	GCAGC	1 cut(s)	401
Bsu15I	ATCGAT	2 cut(s)	96, 380
BsuTUI	ATCGAT	2 cut(s)	96, 380
BtsCI	GGATG	3 cut(s)	179, 286, 324
BtsI	GCAGTG	2 cut(s)	55, 458
BtsIMutI	CAGTG	2 cut(s)	55, 458
Cac8I	GCNNGC	3 cut(s)	213, 476, 485
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	549
ClaI	ATCGAT	2 cut(s)	96, 380
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	121, 333, 375
CviAII	CATG	4 cut(s)	202, 244, 298, 575
CviJI	RGCY	6 cut(s)	27, 132, 238, 414, 520, 593
CviKI_1	RGCY	6 cut(s)	27, 132, 238, 414, 520, 593
CviQI	GTAC	3 cut(s)	121, 333, 375
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	95, 248
DpnII	GATC	2 cut(s)	93, 246
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	483, 542
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	182, 249
EcoRV	GATATC	1 cut(s)	195
FaeI	CATG	4 cut(s)	205, 247, 301, 578
FatI	CATG	4 cut(s)	201, 243, 297, 574
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	3 cut(s)	166, 273, 331
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	415
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	205, 247, 301, 578
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	3 cut(s)	15, 469, 529
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	2 cut(s)	265, 353
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	318, 463
Hpy188III	TCNNGA	5 cut(s)	91, 272, 290, 497, 575
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	38, 404
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	4 cut(s)	328, 355, 451, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 480, 484
HpyF3I	CTNAG	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	205, 247, 301, 578
HspAI	GCGC	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	93, 246
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	337, 438
MaeI	CTAG	1 cut(s)	594
MalI	GATC	2 cut(s)	95, 248
MboI	GATC	2 cut(s)	93, 246
MboII	GAAGA	2 cut(s)	455, 535
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	2 cut(s)	336, 581
MlyI	GAGTC	2 cut(s)	24, 538
MmeI	TCCRAC	2 cut(s)	222, 372
MnlI	CCTC	4 cut(s)	135, 379, 545, 582
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	27, 544
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	184, 251
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	184, 251
MvnI	CGCG	2 cut(s)	267, 474
MwoI	GCNNNNNNNGC	3 cut(s)	361, 480, 484
NdeII	GATC	2 cut(s)	93, 246
NlaIII	CATG	4 cut(s)	205, 247, 301, 578
NlaIV	GGNNCC	2 cut(s)	122, 222
NspI	RCATGY	1 cut(s)	205
PagI	TCATGA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	416
PleI	GAGTC	2 cut(s)	23, 537
PpsI	GAGTC	2 cut(s)	23, 537
Psp6I	CCWGG	2 cut(s)	182, 249
PspGI	CCWGG	2 cut(s)	182, 249
PspN4I	GGNNCC	2 cut(s)	122, 222
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	3 cut(s)	122, 334, 376
RsaNI	GTAC	3 cut(s)	121, 333, 375
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	2 cut(s)	93, 246
SchI	GAGTC	2 cut(s)	24, 538
ScrFI	CCNGG	2 cut(s)	184, 251
SetI	ASST	5 cut(s)	29, 122, 134, 255, 595
SfaNI	GCATC	2 cut(s)	337, 438
Sse9I	AATT	2 cut(s)	336, 581
SsiI	CCGC	4 cut(s)	304, 364, 417, 542
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	182, 249
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	96, 380, 408
TasI	AATT	2 cut(s)	336, 581
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	55, 458
TseI	GCWGC	1 cut(s)	414
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	55, 458
XceI	RCATGY	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.