Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Reverse (-)

2655792 .. 2656391

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCAAGTGATTGTGAAGTATGGCAACCAGAAAATCCAGAAATCGACCAATTATACGACACTTCTTCTGCAGAACCCGAGTTCTTGATTGAACTTTATGCTTCCATTGATGAAAGTGTGCACTATGAAAAGTTCAATGCGCGGTGCCACCTTTTGACAGATAGTAGGACATCCTGGTCTGTAATATCCATCATGCTTTCTCAGGTGGGGGTTCCCTATCATGTTCAGCCATTAATGATCCAAAAGATTTCGACTGATGCTCACCAGATAGCCAATGATCCTGGTAACATGTACCTCAAGACTATTCCGATGGTAGTGTCTCTTAGAGTACCTCAAGAAGGATTGCCTGAATTTCCCGTCCATGAGATAAGGTTTGTGCCCACCAGTAAGTCAGCAATAGAAGAGATGCTTGAGTCGAGGGTGAAAATTGAAGGTTGCGAAGAGCAATGCATGGTATGTTTGGATGATATTCTGATAGGGGGTGAAGCCACATGCATGCCTTGCTCGCATGTGTTTCACGAAACTTGTATAGTGAATTGGCTGCAGAAGAGCAATCTTTGCCCATTGTGTCGATTTGAGATGCCTGCCGAATACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

4.57

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	140 - 194	1.3e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	149 - 191	1e-13	Ring finger domain
zf-C3HC4_2	PF13923	149 - 190	5.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	149 - 177	6.3e-09	RING-like zinc finger
zf-rbx1	PF12678	161 - 191	8e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	144
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	232, 272
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	293, 330
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	92, 136, 431
AjnI	CCWGG	2 cut(s)	173, 280
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	232, 272
Ama87I	CYCGRG	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	254, 433, 494
AvaI	CYCGRG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	123, 381
BanI	GGYRCC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	2 cut(s)	197, 304
BciT130I	CCWGG	2 cut(s)	175, 282
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	69, 542
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	175, 282
BmeT110I	CYCGRG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	146, 213
BmrFI	CCNGG	2 cut(s)	175, 282
BmsI	GCATC	3 cut(s)	247, 396, 570
BpuEI	CTTGAG	3 cut(s)	281, 318, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	175, 282
BseGI	GGATG	2 cut(s)	170, 469
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	384
BseSI	GKGCMC	2 cut(s)	123, 381
BseXI	GCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	123, 381
Bsp143I	GATC	2 cut(s)	237, 277
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	146, 213
BspMAI	CTGCAG	2 cut(s)	73, 546
BspPI	GGATC	2 cut(s)	232, 272
BspQI	GCTCTTC	2 cut(s)	435, 542
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	237, 277
Bst2UI	CCWGG	2 cut(s)	175, 282
Bst6I	CTCTTC	3 cut(s)	396, 435, 542
BstAPI	GCANNNNNTGC	2 cut(s)	501, 558
BstC8I	GCNNGC	3 cut(s)	497, 506, 585
BstDEI	CTNAG	2 cut(s)	201, 323
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	170, 469
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	240, 280
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	237, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
BstNI	CCWGG	2 cut(s)	175, 282
BstNSI	RCATGY	4 cut(s)	292, 495, 499, 512
BstSCI	CCNGG	2 cut(s)	173, 280
BstSFI	CTRYAG	2 cut(s)	69, 542
BstSLI	GKGCMC	2 cut(s)	123, 381
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	170, 469
Cac8I	GCNNGC	3 cut(s)	497, 506, 585
CfoI	GCGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	292, 329
CviAII	CATG	9 cut(s)	193, 221, 289, 362, 451, 492, 496, 509, 597
CviJI	RGCY	4 cut(s)	229, 272, 488, 541
CviKI_1	RGCY	4 cut(s)	229, 272, 488, 541
CviQI	GTAC	2 cut(s)	292, 329
DdeI	CTNAG	2 cut(s)	201, 323
DpnI	GATC	2 cut(s)	239, 279
DpnII	GATC	2 cut(s)	237, 277
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	3 cut(s)	396, 435, 542
EarI	CTCTTC	3 cut(s)	396, 435, 542
Eco88I	CYCGRG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	173, 280
EcoT22I	ATGCAT	2 cut(s)	452, 497
FaeI	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	9 cut(s)	192, 220, 288, 361, 450, 491, 495, 508, 596
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	2 cut(s)	157, 476
Fsp4HI	GCNGC	1 cut(s)	542
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	3 cut(s)	254, 433, 494
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	309, 474
Hpy188III	TCNNGA	5 cut(s)	38, 85, 298, 335, 518
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	332, 425
HpyCH4V	TGCA	5 cut(s)	71, 121, 450, 495, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
HpyF3I	CTNAG	2 cut(s)	201, 323
Hsp92II	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	237, 277
LguI	GCTCTTC	2 cut(s)	435, 542
Lsp1109I	GCAGC	1 cut(s)	528
LweI	GCATC	3 cut(s)	247, 396, 570
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	239, 279
MboI	GATC	2 cut(s)	237, 277
MboII	GAAGA	4 cut(s)	57, 413, 452, 559
MhlI	GDGCHC	2 cut(s)	123, 381
MluCI	AATT	4 cut(s)	50, 350, 426, 535
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	3 cut(s)	305, 342, 411
Mph1103I	ATGCAT	2 cut(s)	452, 497
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	175, 282
MvaI	CCWGG	2 cut(s)	175, 282
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
NdeII	GATC	2 cut(s)	237, 277
NlaIII	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
NlaIV	GGNNCC	2 cut(s)	146, 213
NsiI	ATGCAT	2 cut(s)	452, 497
NspI	RCATGY	4 cut(s)	292, 495, 499, 512
PaeI	GCATGC	1 cut(s)	499
PciI	ACATGT	1 cut(s)	288
PciSI	GCTCTTC	2 cut(s)	435, 542
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PscI	ACATGT	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	173, 280
PspGI	CCWGG	2 cut(s)	173, 280
PspN4I	GGNNCC	2 cut(s)	146, 213
PstI	CTGCAG	2 cut(s)	73, 546
RsaI	GTAC	2 cut(s)	293, 330
RsaNI	GTAC	2 cut(s)	292, 329
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	2 cut(s)	435, 542
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	2 cut(s)	237, 277
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	175, 282
SduI	GDGCHC	2 cut(s)	123, 381
SetI	ASST	6 cut(s)	153, 207, 297, 334, 374, 436
SfaNI	GCATC	3 cut(s)	247, 396, 570
SfcI	CTRYAG	2 cut(s)	69, 542
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	3 cut(s)	296, 333, 410
SmoI	CTYRAG	3 cut(s)	296, 333, 410
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	4 cut(s)	50, 350, 426, 535
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	173, 280
TaqI	TCGA	4 cut(s)	45, 251, 416, 571
TasI	AATT	4 cut(s)	50, 350, 426, 535
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseI	GCWGC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	126, 141
VneI	GTGCAC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	4 cut(s)	292, 495, 499, 512
Zsp2I	ATGCAT	2 cut(s)	452, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.