Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017305

Physical Location & Seq

Genomic Coordinates Reverse (-)

15536789 .. 15537445

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCAAGCTACAGAGCCTTTTCGAGTTGTGAAGTATGGCAATCAGAAAATTTCGAACCTGGGGAAGAAAATTTTCTCTACTCAAGAAAACCCGAGTTCTTGATTGAGATTTTTGCTTCCTTTACAAGGGAAGAAGATTACCCTCTAGTTCCAAGGTCTACTTTACACTTCCATAAGTTCAAGGAGCAATGTCACCTTTTAACAGAGAGCAGAACATCCTGGTCTGTGATATCCAACATGCTTACTCAGATACTGGTTCCCTATCATGTTCAGCCCTTCATGATCCACACTATTTCTACTCGTGCTCGTGAGATTGCCGGTGAGCCTGAGAACGCAAACCGAAACACCATTCCGATACTAGTGTCCCTTACAGTTGGACAAGAACCATTCTTGGAGGACCAAGACGAACCCGAAATTTCTGACCATGTGTTACAGTTGGTGCGCGCAAGAAAGTCAGCAATTGATGAGCTAGAGAAGGTGAAAGTTGAAGGCTGTGCAAAGCCTTGTGTTATATGTTTGGAAGAGATTGTAAACGGTTCTGAAGCCACTCGCATGCCTTGCTTTCATGTCTACCATGAGAGTTGCATAGTGAACTGGCTGGAGAAGAGTCACCTCTGTCCGTTGTGTCGGTTTGAGATGCCGGCCGAATTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

219

Amino Acids

25.24

Weight (kDa)

5.14

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017305)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15260
malus_domestica	MD06G1190000.v1.1 MD14G1196800.v1.1
prunus_persica	Prupe.5G189000_v2.0.a1
pyrus_communis	pycom06g16870
rosa_chinensis	RchiOBHm_Chr7g0180831
rosa_multiflora	Rmu_sc0007457.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272490
rosa_rugosa	Rorug06G0436700
rosa_samantha	Rh7AG038300 Rh7CG039500 Rh7DG038000
rosa_wichuraiana	Rw7G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	158, 570
AccII	CGCG	1 cut(s)	444
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	4 cut(s)	49, 70, 414, 647
AcuI	CTGAAG	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	181, 488
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	58, 218
AluBI	AGCT	2 cut(s)	9, 469
AluI	AGCT	2 cut(s)	9, 469
Alw21I	GWGCWC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	642
ApoI	RAATTY	4 cut(s)	49, 70, 414, 647
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	444, 446
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	4 cut(s)	185, 332, 490, 602
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BauI	CACGAG	2 cut(s)	300, 306
Bbv12I	GWGCWC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	60, 220
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	3 cut(s)	146, 359, 470
BfmI	CTRYAG	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	60, 220
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	60, 220
BmsI	GCATC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	59, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	2 cut(s)	317, 640
Bse1I	ACTGG	2 cut(s)	258, 599
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	60, 220
BseDI	CCNNGG	2 cut(s)	59, 152
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	260, 318
BseNI	ACTGG	2 cut(s)	258, 599
BsePI	GCGCGC	1 cut(s)	442
BseX3I	CGGCCG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	644
BsiEI	CGRYCG	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	318, 641
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	2 cut(s)	259, 319
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	2 cut(s)	279, 653
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	2 cut(s)	317, 640
BsrI	ACTGG	2 cut(s)	258, 599
BssAI	RCCGGY	2 cut(s)	317, 640
BssECI	CCNNGG	2 cut(s)	59, 152
BssHII	GCGCGC	1 cut(s)	442
BssMI	GATC	1 cut(s)	282
BssSI	CACGAG	2 cut(s)	300, 306
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	2 cut(s)	300, 306
Bst2UI	CCWGG	2 cut(s)	60, 220
Bst4CI	ACNGT	3 cut(s)	373, 435, 536
Bst6I	CTCTTC	2 cut(s)	516, 599
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	444, 554, 642
BstDEI	CTNAG	2 cut(s)	246, 327
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	2 cut(s)	444, 446
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	1 cut(s)	645
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	2 cut(s)	60, 220
BstNSI	RCATGY	2 cut(s)	241, 556
BstSCI	CCNGG	2 cut(s)	58, 218
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	444
BstZI	CGGCCG	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	444, 554, 642
CaiI	CAGNNNCTG	1 cut(s)	253
CciI	TCATGA	2 cut(s)	279, 653
CfoI	GCGC	2 cut(s)	444, 446
Cfr10I	RCCGGY	2 cut(s)	317, 640
Cfr13I	GGNCC	1 cut(s)	397
CviAII	CATG	8 cut(s)	238, 266, 280, 425, 553, 566, 575, 654
DdeI	CTNAG	2 cut(s)	246, 327
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	642
EagI	CGGCCG	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	516, 599
EarI	CTCTTC	2 cut(s)	516, 599
EclXI	CGGCCG	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	58, 218
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	8 cut(s)	241, 269, 283, 428, 556, 569, 578, 657
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	8 cut(s)	237, 265, 279, 424, 552, 565, 574, 653
FblI	GTMKAC	2 cut(s)	158, 570
FokI	GGATG	1 cut(s)	202
FspBI	CTAG	3 cut(s)	146, 359, 470
GlaI	GCGC	2 cut(s)	443, 445
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	2 cut(s)	318, 641
HhaI	GCGC	2 cut(s)	444, 446
Hin1II	CATG	8 cut(s)	241, 269, 283, 428, 556, 569, 578, 657
Hin6I	GCGC	2 cut(s)	442, 444
HinP1I	GCGC	2 cut(s)	442, 444
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	318, 641
HphI	GGTGA	4 cut(s)	185, 332, 490, 602
Hpy166II	GTNNAC	4 cut(s)	159, 532, 571, 592
Hpy188I	TCNGA	5 cut(s)	46, 249, 354, 421, 541
Hpy188III	TCNNGA	5 cut(s)	84, 100, 280, 308, 654
Hpy8I	GTNNAC	4 cut(s)	159, 532, 571, 592
HpyAV	CCTTC	3 cut(s)	286, 469, 482
HpyCH4III	ACNGT	3 cut(s)	373, 435, 536
HpyCH4V	TGCA	2 cut(s)	497, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	2 cut(s)	246, 327
Hsp92II	CATG	8 cut(s)	241, 269, 283, 428, 556, 569, 578, 657
HspAI	GCGC	2 cut(s)	442, 444
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	45, 72, 205, 232, 239, 331, 339, 580, 584
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	3 cut(s)	146, 359, 470
MaeIII	GTNAC	3 cut(s)	191, 429, 608
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	5 cut(s)	77, 143, 146, 533, 616
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	5 cut(s)	49, 70, 414, 459, 647
MlyI	GAGTC	1 cut(s)	616
MmeI	TCCRAC	2 cut(s)	258, 355
MnlI	CCTC	3 cut(s)	153, 388, 623
MroNI	GCCGGC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	2 cut(s)	318, 641
MspR9I	CCNGG	2 cut(s)	60, 220
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	60, 220
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	558
NaeI	GCCGGC	1 cut(s)	642
NdeII	GATC	1 cut(s)	282
NgoMIV	GCCGGC	1 cut(s)	640
NlaIII	CATG	8 cut(s)	241, 269, 283, 428, 556, 569, 578, 657
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	191, 608
NspI	RCATGY	2 cut(s)	241, 556
NspV	TTCGAA	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	2 cut(s)	279, 653
PauI	GCGCGC	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	58, 218
PspGI	CCWGG	2 cut(s)	58, 218
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	253
PteI	GCGCGC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	2 cut(s)	60, 220
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	11, 61, 158, 198, 471, 480, 615
SfaNI	GCATC	1 cut(s)	627
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SpeI	ACTAGT	1 cut(s)	358
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	5 cut(s)	49, 70, 414, 459, 647
SspMI	CTAG	3 cut(s)	146, 359, 470
StyD4I	CCNGG	2 cut(s)	58, 218
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	373, 435, 536
TaqI	TCGA	2 cut(s)	23, 54
TasI	AATT	5 cut(s)	49, 70, 414, 459, 647
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	191, 608
Tsp45I	GTSAC	2 cut(s)	191, 608
TspDTI	ATGAA	2 cut(s)	268, 554
TspGWI	ACGGA	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	4 cut(s)	49, 70, 414, 647
XceI	RCATGY	2 cut(s)	241, 556
XmiI	GTMKAC	2 cut(s)	158, 570
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	146, 359, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.